RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	YER184C	P39961	794 aa		4.88	□□□□□ -1.63
NUP1	YOR098C	ASN1	P49089	572 aa	Known RBP	4.88	□□□□□ -1.63
NUP1	YOR098C	VEL1	P53058	206 aa		4.88	□□□□□ -1.63
NUP1	YOR098C	YIP3	P53633	176 aa		4.88	□□□□□ -1.63
NUP1	YOR098C	ATG17	Q06410	417 aa		4.88	□□□□□ -1.63
NUP1	YOR098C	YDL218W	Q07629	317 aa		4.88	□□□□□ -1.63
NUP1	YOR098C	DET1	Q99288	334 aa	Known RBP	4.88	□□□□□ -1.63
NUP1	YOR098C	HEM15	P16622	393 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	ACB1	P31787	87 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	NUP2	P32499	720 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	PRS2	P38620	318 aa	Known RBP	4.87	□□□□□ -1.63
NUP1	YOR098C	VMA22	P38784	181 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	YIP1	P53039	248 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	MSS11	Q03825	758 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	SEC13	Q04491	297 aa	Known RBP	4.87	□□□□□ -1.63
NUP1	YOR098C	IDH1	P28834	360 aa	Known RBP RIP-Chip data	4.87	□□□□□ -1.63	not detected
NUP1	YOR098C	MKK1	P32490	508 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	MRX3	P38172	270 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	PHO90	P39535	881 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	YER121W	P40076	114 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	DDI1	P40087	428 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	INM2	Q05533	292 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	ASR1	Q06834	288 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	NDE2	Q07500	545 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	GAT3	Q07928	141 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	YDL109C	Q12103	647 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	ISY1	P21374	235 aa	Predicted RBP	4.87	□□□□□ -1.63
NUP1	YOR098C	YCR041W	P37265	110 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	PCL5	P38794	229 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	LYS1	P38998	373 aa	RIP-Chip data	4.87	□□□□□ -1.63	not detected
NUP1	YOR098C	JHD2	P47156	728 aa	Predicted RBP	4.87	□□□□□ -1.63
NUP1	YOR098C	NIF3	P53081	288 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	YDR476C	Q03362	224 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	SLD5	Q03406	294 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	YOP1	Q12402	180 aa		4.87	□□□□□ -1.63
NUP1	YOR098C	UTP11	P34247	250 aa	Predicted RBP	4.86	□□□□□ -1.63
NUP1	YOR098C	LSG1	P53145	640 aa	Known RBP	4.86	□□□□□ -1.63
NUP1	YOR098C	VAC7	P53950	1165 aa		4.86	□□□□□ -1.63
NUP1	YOR098C	COA4	Q05809	96 aa		4.86	□□□□□ -1.63
NUP1	YOR098C	SSK1	Q07084	712 aa		4.86	□□□□□ -1.63
NUP1	YOR098C	POM33	Q12164	279 aa		4.86	□□□□□ -1.63
NUP1	YOR098C	TUB1	P09733	447 aa	Known RBP	4.86	□□□□□ -1.63
NUP1	YOR098C	MRPL8	P22353	238 aa		4.86	□□□□□ -1.63
NUP1	YOR098C	PDX3	P38075	228 aa	Known RBP	4.86	□□□□□ -1.63
NUP1	YOR098C	MEI4	P29467	408 aa		4.85	□□□□□ -1.63
NUP1	YOR098C	NDC1	P32500	655 aa		4.85	□□□□□ -1.63
NUP1	YOR098C	ZRT1	P32804	376 aa		4.85	□□□□□ -1.63
NUP1	YOR098C	IDP2	P41939	412 aa		4.85	□□□□□ -1.63
NUP1	YOR098C	TAD2	P47058	250 aa		4.85	□□□□□ -1.63
NUP1	YOR098C	ORC5	P50874	479 aa		4.85	□□□□□ -1.63
NUP1	YOR098C	FRE4	P53746	719 aa		4.85	□□□□□ -1.63
NUP1	YOR098C	MEX67	Q99257	599 aa	Known RBP	4.85	□□□□□ -1.63
NUP1	YOR098C	PGK1	P00560	416 aa	Known RBP	4.85	□□□□□ -1.63
NUP1	YOR098C	NAM2	P11325	894 aa		4.85	□□□□□ -1.63
NUP1	YOR098C	RIM2	P38127	377 aa		4.85	□□□□□ -1.63
NUP1	YOR098C	BMT2	P38278	337 aa		4.85	□□□□□ -1.63
NUP1	YOR098C	PLB3	Q08108	686 aa		4.85	□□□□□ -1.63
NUP1	YOR098C	CMD1	P06787	147 aa	Known RBP	4.85	□□□□□ -1.63
NUP1	YOR098C	RPB8	P20436	146 aa		4.85	□□□□□ -1.63
NUP1	YOR098C	RBK1	P25332	333 aa		4.85	□□□□□ -1.63
NUP1	YOR098C	DCC1	P25559	380 aa		4.85	□□□□□ -1.63
NUP1	YOR098C	BUD23	P25627	275 aa	Predicted RBP	4.85	□□□□□ -1.63
NUP1	YOR098C	SNC1	P31109	117 aa		4.85	□□□□□ -1.63
NUP1	YOR098C	RBG1	P39729	369 aa		4.85	□□□□□ -1.63
NUP1	YOR098C	YKE4	P40544	346 aa		4.85	□□□□□ -1.63
NUP1	YOR098C	YPL077C	Q02831	240 aa		4.85	□□□□□ -1.63
NUP1	YOR098C	IRC4	Q03036	179 aa		4.85	□□□□□ -1.63
NUP1	YOR098C	LSB5	P25369	354 aa		4.84	□□□□□ -1.63
NUP1	YOR098C	AIM3	P38266	947 aa	Known RBP	4.84	□□□□□ -1.63
NUP1	YOR098C	AME1	P38313	324 aa		4.84	□□□□□ -1.63
NUP1	YOR098C	SHC1	P39000	512 aa		4.84	□□□□□ -1.63
NUP1	YOR098C	RPH1	P39956	796 aa		4.84	□□□□□ -1.63
NUP1	YOR098C	POG1	P40473	351 aa		4.84	□□□□□ -1.63
NUP1	YOR098C	MAM33	P40513	266 aa		4.84	□□□□□ -1.63
NUP1	YOR098C	GAB1	P41733	394 aa		4.84	□□□□□ -1.63
NUP1	YOR098C	CAF40	P53829	373 aa		4.84	□□□□□ -1.63
NUP1	YOR098C	ARP10	Q04549	284 aa		4.84	□□□□□ -1.63
NUP1	YOR098C	CSM4	Q08955	156 aa		4.84	□□□□□ -1.63
NUP1	YOR098C	YPR202W	Q08993	238 aa		4.84	□□□□□ -1.63
NUP1	YOR098C	RGT2	Q12300	763 aa		4.84	□□□□□ -1.63
NUP1	YOR098C	SSO1	P32867	290 aa		4.84	□□□□□ -1.63
NUP1	YOR098C	KEG1	P43614	200 aa		4.84	□□□□□ -1.63
NUP1	YOR098C	CPD1	P53314	239 aa		4.84	□□□□□ -1.63
NUP1	YOR098C	NSG2	P53898	299 aa		4.84	□□□□□ -1.63
NUP1	YOR098C	SPR6	Q01684	191 aa		4.84	□□□□□ -1.63
NUP1	YOR098C	HTZ1	Q12692	134 aa	Known RBP	4.84	□□□□□ -1.63
NUP1	YOR098C	HEM1	P09950	548 aa	Predicted RBP	4.84	□□□□□ -1.64
NUP1	YOR098C	AQY1	P0CD91	305 aa		4.84	□□□□□ -1.64
NUP1	YOR098C	SSC1	P0CS90	654 aa	Known RBP	4.84	□□□□□ -1.64
NUP1	YOR098C	YCR007C	P25354	239 aa		4.84	□□□□□ -1.64
NUP1	YOR098C	YFR057W	P43625	151 aa		4.84	□□□□□ -1.64
NUP1	YOR098C	YPT32	P51996	222 aa	Known RBP	4.84	□□□□□ -1.64
NUP1	YOR098C	NUP100	Q02629	959 aa		4.84	□□□□□ -1.64
NUP1	YOR098C	YDR209C	Q03480	137 aa		4.84	□□□□□ -1.64
NUP1	YOR098C	FMN1	Q03778	218 aa		4.84	□□□□□ -1.64
NUP1	YOR098C	SPC2	Q04969	178 aa		4.84	□□□□□ -1.64
NUP1	YOR098C	TMS1	Q12116	473 aa		4.84	□□□□□ -1.64
NUP1	YOR098C	RPL31A	P0C2H8	113 aa	Known RBP	4.83	□□□□□ -1.64
NUP1	YOR098C	RNA15	P25299	296 aa	Predicted RBP	4.83	□□□□□ -1.64
NUP1	YOR098C	POF1	P25576	258 aa		4.83	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 17.6 ms