RNA–Protein interactions for RNA: YDR073W

SNF11, Transcript of Subunit of the SWI/SNF chromatin remodeling complex, yeast

Gene SNF11, Length 510 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNF11	YDR073W	CDH1	P53197	566 aa		4.84	□□□□□ -1.63
SNF11	YDR073W	VHT1	P53241	593 aa		4.84	□□□□□ -1.63
SNF11	YDR073W	ZRG17	P53735	605 aa		4.84	□□□□□ -1.63
SNF11	YDR073W	ESA1	Q08649	445 aa		4.84	□□□□□ -1.63
SNF11	YDR073W	TAF10	Q12030	206 aa		4.84	□□□□□ -1.63
SNF11	YDR073W	PRM4	Q12498	284 aa		4.84	□□□□□ -1.63
SNF11	YDR073W	AI5_BETA	Q9ZZX0	354 aa		4.84	□□□□□ -1.63
SNF11	YDR073W	MATALPHA2	P0CY08	210 aa		4.83	□□□□□ -1.64
SNF11	YDR073W	HMLALPHA2	P0CY09	210 aa		4.83	□□□□□ -1.64
SNF11	YDR073W	CBS2	P14905	389 aa		4.83	□□□□□ -1.64
SNF11	YDR073W	MIR1	P23641	311 aa	Known RBP	4.83	□□□□□ -1.64
SNF11	YDR073W	CUE2	P36075	443 aa	Known RBP	4.83	□□□□□ -1.64
SNF11	YDR073W	MDM31	P38880	579 aa		4.83	□□□□□ -1.64
SNF11	YDR073W	SHC1	P39000	512 aa		4.83	□□□□□ -1.64
SNF11	YDR073W	COX15	P40086	486 aa		4.83	□□□□□ -1.64
SNF11	YDR073W	YJL213W	P40896	331 aa		4.83	□□□□□ -1.64
SNF11	YDR073W	RPC17	P47076	161 aa		4.83	□□□□□ -1.64
SNF11	YDR073W	HOC1	P47124	396 aa		4.83	□□□□□ -1.64
SNF11	YDR073W	LIF1	P53150	421 aa		4.83	□□□□□ -1.64
SNF11	YDR073W	PEX31	P53203	462 aa		4.83	□□□□□ -1.64
SNF11	YDR073W	SHY1	P53266	389 aa		4.83	□□□□□ -1.64
SNF11	YDR073W	MSO1	P53604	210 aa	Known RBP	4.83	□□□□□ -1.64
SNF11	YDR073W	SUR7	P54003	302 aa		4.83	□□□□□ -1.64
SNF11	YDR073W	CDC14	Q00684	551 aa		4.83	□□□□□ -1.64
SNF11	YDR073W	RPS14A	P06367	137 aa	Known RBP	4.82	□□□□□ -1.64
SNF11	YDR073W	MSI1	P13712	422 aa		4.82	□□□□□ -1.64
SNF11	YDR073W	RPO26	P20435	155 aa		4.82	□□□□□ -1.64
SNF11	YDR073W	MCK1	P21965	375 aa	Known RBP	4.82	□□□□□ -1.64
SNF11	YDR073W	CPR4	P25334	318 aa		4.82	□□□□□ -1.64
SNF11	YDR073W	SEC1	P30619	724 aa	Known RBP	4.82	□□□□□ -1.64
SNF11	YDR073W	VPS21	P36017	210 aa	Known RBP	4.82	□□□□□ -1.64
SNF11	YDR073W	RTC3	P38804	111 aa	Predicted RBP	4.82	□□□□□ -1.64
SNF11	YDR073W	NDT80	P38830	627 aa		4.82	□□□□□ -1.64
SNF11	YDR073W	RPS14B	P39516	138 aa	Known RBP	4.82	□□□□□ -1.64
SNF11	YDR073W	PEX22	P39718	180 aa		4.82	□□□□□ -1.64
SNF11	YDR073W	ERG28	P40030	148 aa		4.82	□□□□□ -1.64
SNF11	YDR073W	COS10	P52924	374 aa		4.82	□□□□□ -1.64
SNF11	YDR073W	HOP2	P53187	214 aa		4.82	□□□□□ -1.64
SNF11	YDR073W	CLD1	P53264	445 aa		4.82	□□□□□ -1.64
SNF11	YDR073W	MTM1	P53320	366 aa		4.82	□□□□□ -1.64
SNF11	YDR073W	FSH2	Q05015	223 aa		4.82	□□□□□ -1.64
SNF11	YDR073W	RIF2	Q06208	395 aa		4.82	□□□□□ -1.64
SNF11	YDR073W	TAZ1	Q06510	381 aa		4.82	□□□□□ -1.64
SNF11	YDR073W	ICT1	Q12385	394 aa		4.82	□□□□□ -1.64
SNF11	YDR073W	MHP1	P43638	1398 aa		4.81	□□□□□ -1.64
SNF11	YDR073W	YBR121C-A	P0C5L4	52 aa		4.81	□□□□□ -1.64
SNF11	YDR073W	POX1	P13711	748 aa		4.81	□□□□□ -1.64
SNF11	YDR073W	CBF1	P17106	351 aa		4.81	□□□□□ -1.64
SNF11	YDR073W	YMR31	P19955	123 aa		4.81	□□□□□ -1.64
SNF11	YDR073W	LSM12	P38828	187 aa	Known RBP	4.81	□□□□□ -1.64
SNF11	YDR073W	YNL208W	P40159	199 aa	Known RBP	4.81	□□□□□ -1.64
SNF11	YDR073W	AIM23	P47015	356 aa		4.81	□□□□□ -1.64
SNF11	YDR073W	YPT32	P51996	222 aa	Known RBP	4.81	□□□□□ -1.64
SNF11	YDR073W	CWC25	P53854	179 aa	Known RBP	4.81	□□□□□ -1.64
SNF11	YDR073W	GMC1	Q04399	608 aa		4.81	□□□□□ -1.64
SNF11	YDR073W	DPP1	Q05521	289 aa		4.81	□□□□□ -1.64
SNF11	YDR073W	YLR446W	Q06204	433 aa		4.81	□□□□□ -1.64
SNF11	YDR073W	SMD2	Q06217	110 aa	Known RBP	4.81	□□□□□ -1.64
SNF11	YDR073W	SME1	Q12330	94 aa	Predicted RBP	4.81	□□□□□ -1.64
SNF11	YDR073W	RAD9	P14737	1309 aa		4.8	□□□□□ -1.64
SNF11	YDR073W	RPL27A	P0C2H6	136 aa	Known RBP	4.8	□□□□□ -1.64
SNF11	YDR073W	RPL27B	P0C2H7	136 aa	Known RBP	4.8	□□□□□ -1.64
SNF11	YDR073W	IFM1	P25038	676 aa		4.8	□□□□□ -1.64
SNF11	YDR073W	NAM9	P27929	486 aa		4.8	□□□□□ -1.64
SNF11	YDR073W	URA10	P30402	227 aa		4.8	□□□□□ -1.64
SNF11	YDR073W	LDS1	P31379	325 aa		4.8	□□□□□ -1.64
SNF11	YDR073W	PMT2	P31382	759 aa		4.8	□□□□□ -1.64
SNF11	YDR073W	SDH3	P33421	198 aa		4.8	□□□□□ -1.64
SNF11	YDR073W	YER184C	P39961	794 aa		4.8	□□□□□ -1.64
SNF11	YDR073W	YIL067C	P40514	678 aa		4.8	□□□□□ -1.64
SNF11	YDR073W	GLG2	P47011	380 aa		4.8	□□□□□ -1.64
SNF11	YDR073W	USE1	P53146	245 aa		4.8	□□□□□ -1.64
SNF11	YDR073W	MAL13	P53338	473 aa		4.8	□□□□□ -1.64
SNF11	YDR073W	YNL040W	P53960	456 aa	Predicted RBP	4.8	□□□□□ -1.64
SNF11	YDR073W	ASI3	P53983	676 aa		4.8	□□□□□ -1.64
SNF11	YDR073W	TRM44	Q02648	567 aa	Known RBP	4.8	□□□□□ -1.64
SNF11	YDR073W	EBS1	Q03466	884 aa	Known RBP	4.8	□□□□□ -1.64
SNF11	YDR073W	PEX30	Q06169	523 aa		4.8	□□□□□ -1.64
SNF11	YDR073W	HNT3	Q08702	217 aa		4.8	□□□□□ -1.64
SNF11	YDR073W	RSA1	Q08932	381 aa		4.8	□□□□□ -1.64
SNF11	YDR073W	LAG2	Q92325	660 aa		4.8	□□□□□ -1.64
SNF11	YDR073W	TAD3	Q9URQ3	322 aa		4.8	□□□□□ -1.64
SNF11	YDR073W	MRPL20	P22354	195 aa	Predicted RBP	4.79	□□□□□ -1.64
SNF11	YDR073W	RME1	P32338	300 aa	Known RBP	4.79	□□□□□ -1.64
SNF11	YDR073W	QRI5	P32344	111 aa		4.79	□□□□□ -1.64
SNF11	YDR073W	ECM4	P36156	370 aa		4.79	□□□□□ -1.64
SNF11	YDR073W	YAT2	P40017	923 aa		4.79	□□□□□ -1.64
SNF11	YDR073W	YNL194C	P40169	301 aa		4.79	□□□□□ -1.64
SNF11	YDR073W	YJR085C	P47131	105 aa	Known RBP	4.79	□□□□□ -1.64
SNF11	YDR073W	YNL095C	P53932	642 aa		4.79	□□□□□ -1.64
SNF11	YDR073W	SEC13	Q04491	297 aa	Known RBP	4.79	□□□□□ -1.64
SNF11	YDR073W	TAF9	Q05027	157 aa		4.79	□□□□□ -1.64
SNF11	YDR073W	YHC1	Q05900	231 aa	Known RBP	4.79	□□□□□ -1.64
SNF11	YDR073W	MHR1	Q06630	226 aa		4.79	□□□□□ -1.64
SNF11	YDR073W	ATP16	Q12165	160 aa		4.79	□□□□□ -1.64
SNF11	YDR073W	YKL183C-A	Q3E765	70 aa		4.79	□□□□□ -1.64
SNF11	YDR073W	STH1	P32597	1359 aa		4.78	□□□□□ -1.64
SNF11	YDR073W	HHF1	P02309	103 aa	Known RBP	4.78	□□□□□ -1.64
SNF11	YDR073W	APA2	P22108	325 aa		4.78	□□□□□ -1.64
SNF11	YDR073W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	4.78	□□□□□ -1.64	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 34.3 ms