RNA–Protein interactions for RNA: YJL154C

VPS35, Transcript of Endosomal subunit of membrane-associated retromer complex, yeastyeast

Gene VPS35, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS35YJL154C CDC37P06101 506 aaKnown RBP1.78□□□□□ -2.12
VPS35YJL154C ASP3-2P0CX77 362 aa1.78□□□□□ -2.12
VPS35YJL154C ASP3-3P0CX78 362 aa1.78□□□□□ -2.12
VPS35YJL154C ASP3-4P0CX79 362 aa1.78□□□□□ -2.12
VPS35YJL154C ASP3-1P0CZ17 362 aa1.78□□□□□ -2.12
VPS35YJL154C PUT4P15380 627 aa1.78□□□□□ -2.12
VPS35YJL154C CDC50P25656 391 aa1.78□□□□□ -2.12
VPS35YJL154C RPT5P33297 434 aaKnown RBP1.78□□□□□ -2.12
VPS35YJL154C YUH1P35127 236 aa1.78□□□□□ -2.12
VPS35YJL154C MYO3P36006 1272 aa1.78□□□□□ -2.12
VPS35YJL154C FHL1P39521 936 aa1.78□□□□□ -2.12
VPS35YJL154C YER186CP40101 306 aa1.78□□□□□ -2.12
VPS35YJL154C LOC1P43586 204 aaPredicted RBP1.78□□□□□ -2.12
VPS35YJL154C YGL039WP53183 348 aaKnown RBP1.78□□□□□ -2.12
VPS35YJL154C COS1P53822 381 aa1.78□□□□□ -2.12
VPS35YJL154C GIS2P53849 153 aaKnown RBP RIP-Chip data1.78□□□□□ -2.12not detected
VPS35YJL154C KTR6P54070 446 aa1.78□□□□□ -2.12
VPS35YJL154C INP2Q03824 705 aa1.78□□□□□ -2.12
VPS35YJL154C ECM18Q04623 453 aa1.78□□□□□ -2.12
VPS35YJL154C ARR2Q06597 130 aa1.78□□□□□ -2.12
VPS35YJL154C DIB1Q06819 143 aaPredicted RBP1.78□□□□□ -2.12
VPS35YJL154C FOL3Q12676 427 aaPredicted RBP1.78□□□□□ -2.12
VPS35YJL154C SSK22P25390 1331 aaPredicted RBP1.78□□□□□ -2.13
VPS35YJL154C ISY1P21374 235 aaPredicted RBP1.77□□□□□ -2.13
VPS35YJL154C GIT1P25346 518 aa1.77□□□□□ -2.13
VPS35YJL154C MXR2P25566 168 aa1.77□□□□□ -2.13
VPS35YJL154C ITR2P30606 609 aa1.77□□□□□ -2.13
VPS35YJL154C SRB4P32569 687 aa1.77□□□□□ -2.13
VPS35YJL154C MRPS5P33759 307 aa1.77□□□□□ -2.13
VPS35YJL154C BMT2P38278 337 aa1.77□□□□□ -2.13
VPS35YJL154C SLX1P38324 304 aa1.77□□□□□ -2.13
VPS35YJL154C YFR018CP43599 363 aa1.77□□□□□ -2.13
VPS35YJL154C ABM1P47146 123 aa1.77□□□□□ -2.13
VPS35YJL154C SKI8Q02793 397 aaPredicted RBP1.77□□□□□ -2.13
VPS35YJL154C TMC1Q08422 150 aaPredicted RBP1.77□□□□□ -2.13
VPS35YJL154C SLF1Q12034 447 aaKnown RBP1.77□□□□□ -2.13
VPS35YJL154C AIM45Q12480 344 aaKnown RBP1.77□□□□□ -2.13
VPS35YJL154C DET1Q99288 334 aaKnown RBP1.77□□□□□ -2.13
VPS35YJL154C RPL23AP0CX41 137 aaKnown RBP1.77□□□□□ -2.13
VPS35YJL154C RPL23BP0CX42 137 aaKnown RBP1.77□□□□□ -2.13
VPS35YJL154C ZRC1P20107 442 aa1.77□□□□□ -2.13
VPS35YJL154C VPS3P23643 1011 aa1.77□□□□□ -2.13
VPS35YJL154C VMA5P31412 392 aaKnown RBP1.77□□□□□ -2.13
VPS35YJL154C YBR241CP38142 488 aa1.77□□□□□ -2.13
VPS35YJL154C GPI18P38211 433 aa1.77□□□□□ -2.13
VPS35YJL154C YDR089WP38966 869 aa1.77□□□□□ -2.13
VPS35YJL154C TIM17P39515 158 aa1.77□□□□□ -2.13
VPS35YJL154C YMR134WP40207 237 aa1.77□□□□□ -2.13
VPS35YJL154C PRE5P40302 234 aaKnown RBP1.77□□□□□ -2.13
VPS35YJL154C IGD1P43598 195 aa1.77□□□□□ -2.13
VPS35YJL154C HIT1P46973 164 aa1.77□□□□□ -2.13
VPS35YJL154C YGR168CP53293 376 aa1.77□□□□□ -2.13
VPS35YJL154C MKC7P53379 596 aa1.77□□□□□ -2.13
VPS35YJL154C MNT4P53745 580 aa1.77□□□□□ -2.13
VPS35YJL154C MFG1Q07684 458 aa1.77□□□□□ -2.13
VPS35YJL154C TY3A-GQ12173 290 aa1.77□□□□□ -2.13
VPS35YJL154C TY3A-IQ99219 290 aa1.77□□□□□ -2.13
VPS35YJL154C YLR419WQ06698 1435 aaKnown RBP1.77□□□□□ -2.13
VPS35YJL154C TY3B-IQ7LHG5 1498 aaKnown RBP1.77□□□□□ -2.13
VPS35YJL154C PSK1P31374 1356 aa1.77□□□□□ -2.13
VPS35YJL154C CAR2P07991 424 aaKnown RBP1.76□□□□□ -2.13
VPS35YJL154C GAL3P13045 520 aa1.76□□□□□ -2.13
VPS35YJL154C KSS1P14681 368 aa1.76□□□□□ -2.13
VPS35YJL154C CMK2P22517 447 aa1.76□□□□□ -2.13
VPS35YJL154C LDB16P25587 256 aa1.76□□□□□ -2.13
VPS35YJL154C MGM101P32787 269 aaKnown RBP1.76□□□□□ -2.13
VPS35YJL154C YKL071WP36086 256 aa1.76□□□□□ -2.13
VPS35YJL154C MRPL40P36534 297 aa1.76□□□□□ -2.13
VPS35YJL154C IML3P38265 245 aa1.76□□□□□ -2.13
VPS35YJL154C YHR122WP38829 231 aa1.76□□□□□ -2.13
VPS35YJL154C BAT1P38891 393 aaKnown RBP1.76□□□□□ -2.13
VPS35YJL154C SSO2P39926 295 aa1.76□□□□□ -2.13
VPS35YJL154C BTT1P40314 149 aaPredicted RBP1.76□□□□□ -2.13
VPS35YJL154C BNS1P50084 137 aa1.76□□□□□ -2.13
VPS35YJL154C RNH201P53942 307 aa1.76□□□□□ -2.13
VPS35YJL154C HAL1Q01766 294 aa1.76□□□□□ -2.13
VPS35YJL154C RVB1Q03940 463 aaKnown RBP1.76□□□□□ -2.13
VPS35YJL154C YPR1Q12458 312 aa1.76□□□□□ -2.13
VPS35YJL154C PFK27Q12471 397 aaPredicted RBP1.76□□□□□ -2.13
VPS35YJL154C RPL40AP0CH08 128 aaKnown RBP1.76□□□□□ -2.13
VPS35YJL154C RPL40BP0CH09 128 aaKnown RBP1.76□□□□□ -2.13
VPS35YJL154C GCD2P12754 651 aaPredicted RBP1.76□□□□□ -2.13
VPS35YJL154C OM14P38325 134 aa1.76□□□□□ -2.13
VPS35YJL154C ATG7P38862 630 aa1.76□□□□□ -2.13
VPS35YJL154C YHB1P39676 399 aaKnown RBP1.76□□□□□ -2.13
VPS35YJL154C MTW1P39731 289 aa1.76□□□□□ -2.13
VPS35YJL154C PTI1P39927 425 aaPredicted RBP1.76□□□□□ -2.13
VPS35YJL154C SLT2Q00772 484 aa1.76□□□□□ -2.13
VPS35YJL154C ENT5Q03769 411 aaKnown RBP1.76□□□□□ -2.13
VPS35YJL154C VPS20Q04272 221 aa1.76□□□□□ -2.13
VPS35YJL154C YDR115WQ04598 105 aa1.76□□□□□ -2.13
VPS35YJL154C NNT1Q05874 261 aa1.76□□□□□ -2.13
VPS35YJL154C YDR262WQ12331 272 aa1.76□□□□□ -2.13
VPS35YJL154C LDB17Q12342 491 aa1.76□□□□□ -2.13
VPS35YJL154C RPS16AP0CX51 143 aaKnown RBP1.76□□□□□ -2.13
VPS35YJL154C RPS16BP0CX52 143 aaKnown RBP1.76□□□□□ -2.13
VPS35YJL154C PCL1P24867 279 aa1.76□□□□□ -2.13
VPS35YJL154C PET18P25362 215 aa1.76□□□□□ -2.13
VPS35YJL154C MSN4P33749 630 aa1.76□□□□□ -2.13
VPS35YJL154C BMH2P34730 273 aaKnown RBP1.76□□□□□ -2.13
Retrieved 100 of 5,963 RNA–protein pairs in 17.2 ms