RNA–Protein interactions for RNA: YFL003C

MSH4, Transcript of Protein involved in meiotic recombination, yeast

Gene MSH4, Length 2,637 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSH4	YFL003C	RBG1	P39729	369 aa		2.62	□□□□□ -1.99
MSH4	YFL003C	IBD2	P53892	351 aa		2.62	□□□□□ -1.99
MSH4	YFL003C	HER2	Q03557	464 aa		2.62	□□□□□ -1.99
MSH4	YFL003C	MDM36	Q06820	579 aa		2.62	□□□□□ -1.99
MSH4	YFL003C	ALE1	Q08548	619 aa		2.62	□□□□□ -1.99
MSH4	YFL003C	RAD7	P06779	565 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	CPR4	P25334	318 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	YCR016W	P25617	290 aa	Known RBP	2.61	□□□□□ -1.99
MSH4	YFL003C	TMT1	P32643	299 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	TIR2	P33890	251 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	2.61	□□□□□ -1.99	not detected
MSH4	YFL003C	PTI1	P39927	425 aa	Predicted RBP	2.61	□□□□□ -1.99
MSH4	YFL003C	PRM5	P40476	318 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	SLM1	P40485	686 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	CIN2	P46670	268 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	MRX5	P47007	382 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	BNS1	P50084	137 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	GIM3	P53900	129 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	CSM3	Q04659	317 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	YLR283W	Q05867	314 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	FDH1	Q08911	376 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	SLF1	Q12034	447 aa	Known RBP	2.61	□□□□□ -1.99
MSH4	YFL003C	GIS3	Q12418	502 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	SSK22	P25390	1331 aa	Predicted RBP	2.61	□□□□□ -1.99
MSH4	YFL003C	SRB8	P25648	1427 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	ADH2	P00331	348 aa	Known RBP	2.61	□□□□□ -1.99
MSH4	YFL003C	RAD3	P06839	778 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	RVS161	P25343	265 aa	Known RBP	2.61	□□□□□ -1.99
MSH4	YFL003C	CYM1	P32898	989 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	SIP3	P38717	1229 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	GEP4	P38812	185 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	AGP3	P43548	558 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	SAD1	P43589	448 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	KTR6	P54070	446 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	MRPS17	Q03246	237 aa	Predicted RBP	2.61	□□□□□ -1.99
MSH4	YFL003C	YHC1	Q05900	231 aa	Known RBP	2.61	□□□□□ -1.99
MSH4	YFL003C	BER1	Q06688	274 aa	Known RBP	2.61	□□□□□ -1.99
MSH4	YFL003C	MFG1	Q07684	458 aa		2.61	□□□□□ -1.99
MSH4	YFL003C	ZIP1	P31111	875 aa		2.6	□□□□□ -1.99
MSH4	YFL003C	KRE6	P32486	720 aa		2.6	□□□□□ -1.99
MSH4	YFL003C	FMP46	P36141	133 aa	Known RBP	2.6	□□□□□ -1.99
MSH4	YFL003C	AIM24	P47127	394 aa		2.6	□□□□□ -1.99
MSH4	YFL003C	SEH1	P53011	349 aa	Known RBP	2.6	□□□□□ -1.99
MSH4	YFL003C	TLG2	Q08144	397 aa		2.6	□□□□□ -1.99
MSH4	YFL003C	YLR108C	Q12259	485 aa		2.6	□□□□□ -1.99
MSH4	YFL003C	YCR024C-B	Q3E7Z8	88 aa		2.6	□□□□□ -1.99
MSH4	YFL003C	ROM2	P51862	1356 aa	Known RBP	2.6	□□□□□ -1.99
MSH4	YFL003C	TDH2	P00358	332 aa	Known RBP	2.6	□□□□□ -1.99
MSH4	YFL003C	ATP6	P00854	259 aa		2.6	□□□□□ -1.99
MSH4	YFL003C	CDC36	P06100	191 aa	Predicted RBP	2.6	□□□□□ -1.99
MSH4	YFL003C	YSR3	P23501	404 aa		2.6	□□□□□ -1.99
MSH4	YFL003C	RRT12	P25381	491 aa		2.6	□□□□□ -1.99
MSH4	YFL003C	PRO3	P32263	286 aa	Known RBP	2.6	□□□□□ -1.99
MSH4	YFL003C	LCB3	P47013	409 aa		2.6	□□□□□ -1.99
MSH4	YFL003C	ELP3	Q02908	557 aa	Known RBP	2.6	□□□□□ -1.99
MSH4	YFL003C	YMR209C	Q03648	457 aa		2.6	□□□□□ -1.99
MSH4	YFL003C	GTO3	Q04806	366 aa		2.6	□□□□□ -1.99
MSH4	YFL003C	PBP4	Q07362	185 aa	Known RBP	2.6	□□□□□ -1.99
MSH4	YFL003C	YOR029W	Q12243	111 aa		2.6	□□□□□ -1.99
MSH4	YFL003C	RBK1	P25332	333 aa		2.59	□□□□□ -1.99
MSH4	YFL003C	POP5	P28005	173 aa		2.59	□□□□□ -1.99
MSH4	YFL003C	ANR2	P36090	516 aa	Predicted RBP	2.59	□□□□□ -1.99
MSH4	YFL003C	AIM29	P36154	155 aa		2.59	□□□□□ -1.99
MSH4	YFL003C	PRS4	P38063	326 aa	Predicted RBP	2.59	□□□□□ -1.99
MSH4	YFL003C	MTC6	P38849	526 aa		2.59	□□□□□ -1.99
MSH4	YFL003C	YHR182W	P38870	785 aa		2.59	□□□□□ -1.99
MSH4	YFL003C	TRF5	P48561	642 aa	Known RBP	2.59	□□□□□ -1.99
MSH4	YFL003C	MRM2	P53123	320 aa		2.59	□□□□□ -1.99
MSH4	YFL003C	TSR1	Q07381	788 aa	Known RBP	2.59	□□□□□ -1.99
MSH4	YFL003C	CMS1	Q07897	291 aa	Known RBP	2.59	□□□□□ -1.99
MSH4	YFL003C	YOS9	Q99220	542 aa		2.59	□□□□□ -1.99
MSH4	YFL003C	MET16	P18408	261 aa	Predicted RBP	2.59	□□□□□ -1.99
MSH4	YFL003C	RPS5	P26783	225 aa	Known RBP	2.59	□□□□□ -1.99
MSH4	YFL003C	ASF2	P32448	525 aa	Predicted RBP	2.59	□□□□□ -1.99
MSH4	YFL003C	MUD1	P32605	298 aa	Known RBP	2.59	□□□□□ -1.99
MSH4	YFL003C	CSE2	P33308	149 aa		2.59	□□□□□ -1.99
MSH4	YFL003C	REE1	P40893	198 aa		2.59	□□□□□ -1.99
MSH4	YFL003C	SED5	Q01590	340 aa		2.59	□□□□□ -1.99
MSH4	YFL003C	NUP116	Q02630	1113 aa		2.59	□□□□□ -1.99
MSH4	YFL003C	YPL080C	Q02826	108 aa		2.59	□□□□□ -1.99
MSH4	YFL003C	SSQ1	Q05931	657 aa	Predicted RBP	2.59	□□□□□ -1.99
MSH4	YFL003C	PAM18	Q07914	168 aa		2.59	□□□□□ -1.99
MSH4	YFL003C	SDO1	Q07953	250 aa	Known RBP	2.59	□□□□□ -1.99
MSH4	YFL003C	SMC5	Q08204	1093 aa		2.59	□□□□□ -1.99
MSH4	YFL003C	APC9	Q12107	265 aa		2.59	□□□□□ -1.99
MSH4	YFL003C	HPR1	P17629	752 aa	Known RBP	2.58	□□□□□ -2
MSH4	YFL003C	NAM9	P27929	486 aa		2.58	□□□□□ -2
MSH4	YFL003C	SRB4	P32569	687 aa		2.58	□□□□□ -2
MSH4	YFL003C	MGM101	P32787	269 aa	Known RBP	2.58	□□□□□ -2
MSH4	YFL003C	YKL071W	P36086	256 aa		2.58	□□□□□ -2
MSH4	YFL003C	SWD2	P36104	329 aa	Predicted RBP	2.58	□□□□□ -2
MSH4	YFL003C	DTR1	P38125	572 aa		2.58	□□□□□ -2
MSH4	YFL003C	SMF2	P38778	549 aa		2.58	□□□□□ -2
MSH4	YFL003C	BIG1	P38813	335 aa		2.58	□□□□□ -2
MSH4	YFL003C	FHL1	P39521	936 aa		2.58	□□□□□ -2
MSH4	YFL003C	YER034W	P40022	185 aa	Known RBP	2.58	□□□□□ -2
MSH4	YFL003C	NCA3	P46955	337 aa		2.58	□□□□□ -2
MSH4	YFL003C	YPQ1	Q12010	308 aa		2.58	□□□□□ -2
MSH4	YFL003C	RPN6	Q12377	434 aa		2.58	□□□□□ -2
MSH4	YFL003C	DAL82	P21705	255 aa		2.58	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 34.5 ms