RNA–Protein interactions for RNA: YDR243C

PRP28, Transcript of RNA helicase in the DEAD-box family, yeast

Gene PRP28, Length 1,767 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP28	YDR243C	POM33	Q12164	279 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	YLL058W	Q12198	575 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	YGK3	Q12222	375 aa	Predicted RBP	4.18	□□□□□ -1.74
PRP28	YDR243C	PRM4	Q12498	284 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	CMR1	Q12510	522 aa	Known RBP	4.18	□□□□□ -1.74
PRP28	YDR243C	HSH49	Q99181	213 aa	Predicted RBP	4.18	□□□□□ -1.74
PRP28	YDR243C	UBR1	P19812	1950 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	MSF1	P08425	469 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	GAL7	P08431	366 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	SPE1	P08432	466 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	ASP3-2	P0CX77	362 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	ASP3-3	P0CX78	362 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	ASP3-4	P0CX79	362 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	ASP3-1	P0CZ17	362 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	RPB3	P16370	318 aa	Known RBP	4.17	□□□□□ -1.74
PRP28	YDR243C	EHD3	P28817	500 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	COT1	P32798	439 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	TRS65	P32893	560 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	RER2	P35196	286 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	DOA1	P36037	715 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	TCD2	P36101	447 aa	Known RBP	4.17	□□□□□ -1.74
PRP28	YDR243C	MRPL28	P36527	147 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	YHR035W	P38769	630 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	WSS1	P38838	269 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	FET3	P38993	636 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	SMB1	P40018	196 aa	Known RBP	4.17	□□□□□ -1.74
PRP28	YDR243C	ELO3	P40319	345 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	NIT1	P40447	199 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	YIL067C	P40514	678 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	PMT6	P42934	759 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	PRM10	P42946	383 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	GWT1	P47026	490 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	AZR1	P50080	613 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	COS10	P52924	374 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	DUO1	P53168	247 aa	Known RBP	4.17	□□□□□ -1.74
PRP28	YDR243C	YGR168C	P53293	376 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	YNL134C	P53912	376 aa	Known RBP	4.17	□□□□□ -1.74
PRP28	YDR243C	VPS9	P54787	451 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	ARG5,6	Q01217	863 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	DYN2	Q02647	92 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	TRM44	Q02648	567 aa	Known RBP	4.17	□□□□□ -1.74
PRP28	YDR243C	GRX5	Q02784	150 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	VBA4	Q04602	768 aa	Known RBP	4.17	□□□□□ -1.74
PRP28	YDR243C	ROY1	Q04847	553 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	RIF2	Q06208	395 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	INP54	Q08227	384 aa	Known RBP	4.17	□□□□□ -1.74
PRP28	YDR243C	BSC6	Q08280	497 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	YDL199C	Q12407	687 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	RTN2	Q12443	393 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	PFK27	Q12471	397 aa	Predicted RBP	4.17	□□□□□ -1.74
PRP28	YDR243C	COA6	Q3E846	104 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	HAP3	P13434	144 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	APE1	P14904	514 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	ARE1	P25628	610 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	EMP24	P32803	203 aa	Known RBP	4.17	□□□□□ -1.74
PRP28	YDR243C	ZTA1	P38230	334 aa	Known RBP	4.17	□□□□□ -1.74
PRP28	YDR243C	CHS7	P38843	316 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	MDM31	P38880	579 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	PEP8	P40335	379 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	POG1	P40473	351 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	FMC1	P40491	155 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	NAS2	P40555	220 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	GPP1	P41277	250 aa	Known RBP	4.17	□□□□□ -1.74
PRP28	YDR243C	PFD1	P46988	109 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	TRM9	P49957	279 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	MDM34	P53083	459 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	YGL159W	P53110	370 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	YGR079W	P53249	370 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	YGR126W	P53274	230 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	ERV29	P53337	310 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	GPD1	Q00055	391 aa	Known RBP	4.17	□□□□□ -1.74
PRP28	YDR243C	YPL067C	Q02754	198 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	RIM13	Q03792	727 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	RNH202	Q05635	350 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	YLR225C	Q05948	407 aa	Known RBP	4.17	□□□□□ -1.74
PRP28	YDR243C	ATG10	Q07879	167 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	SRL2	Q12020	392 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	RDL1	Q12305	139 aa	Known RBP	4.17	□□□□□ -1.74
PRP28	YDR243C	FRE6	Q12473	712 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	MHF1	Q3E835	90 aa		4.17	□□□□□ -1.74
PRP28	YDR243C	YLR422W	Q06409	1932 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	COX5B	P00425	151 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	ADH3	P07246	375 aa	Known RBP	4.16	□□□□□ -1.74
PRP28	YDR243C	QCR2	P07257	368 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	SRD1	P09007	221 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	CBS1	P14066	229 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.16	□□□□□ -1.74	not detected
PRP28	YDR243C	ERG6	P25087	383 aa	Known RBP	4.16	□□□□□ -1.74
PRP28	YDR243C	RML2	P32611	393 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	CAT2	P32796	670 aa	Known RBP	4.16	□□□□□ -1.74
PRP28	YDR243C	PEX2	P32800	271 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	MNS1	P32906	549 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	FRE2	P36033	711 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	YKL075C	P36083	450 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	SDH4	P37298	181 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	APL3	P38065	1025 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	FLR1	P38124	548 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	ARP1	P38696	384 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	YHR122W	P38829	231 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	GPI16	P38875	610 aa		4.16	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms