RNA–Protein interactions for RNA: YDL006W

PTC1, Transcript of Type 2C protein phosphatase (PP2C), yeast

Gene PTC1, Length 846 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PTC1	YDL006W	ESA1	Q08649	445 aa		4.09	□□□□□ -1.75
PTC1	YDL006W	THP3	Q12049	470 aa	Known RBP	4.09	□□□□□ -1.75
PTC1	YDL006W	RRP36	Q12481	300 aa	Predicted RBP	4.09	□□□□□ -1.75
PTC1	YDL006W	NOT5	Q12514	560 aa	Predicted RBP	4.09	□□□□□ -1.75
PTC1	YDL006W	MEX67	Q99257	599 aa	Known RBP	4.09	□□□□□ -1.75
PTC1	YDL006W	YKR104W	P0CE69	306 aa		4.08	□□□□□ -1.76
PTC1	YDL006W	RNA1	P11745	407 aa	Known RBP	4.08	□□□□□ -1.76
PTC1	YDL006W	SPT15	P13393	240 aa	Known RBP	4.08	□□□□□ -1.76
PTC1	YDL006W	ARO3	P14843	370 aa	Known RBP	4.08	□□□□□ -1.76
PTC1	YDL006W	PUP2	P32379	260 aa		4.08	□□□□□ -1.76
PTC1	YDL006W	SSE1	P32589	693 aa	Known RBP	4.08	□□□□□ -1.76
PTC1	YDL006W	MDL1	P33310	695 aa		4.08	□□□□□ -1.76
PTC1	YDL006W	YPT52	P36018	234 aa	Known RBP	4.08	□□□□□ -1.76
PTC1	YDL006W	RIB5	P38145	238 aa		4.08	□□□□□ -1.76
PTC1	YDL006W	TAE1	P38340	232 aa		4.08	□□□□□ -1.76
PTC1	YDL006W	FRT2	P39734	528 aa		4.08	□□□□□ -1.76
PTC1	YDL006W	GDI1	P39958	451 aa	Known RBP	4.08	□□□□□ -1.76
PTC1	YDL006W	YER034W	P40022	185 aa	Known RBP	4.08	□□□□□ -1.76
PTC1	YDL006W	YFL067W	P43537	175 aa		4.08	□□□□□ -1.76
PTC1	YDL006W	CCH1	P50077	2039 aa		4.08	□□□□□ -1.76
PTC1	YDL006W	GTR2	P53290	341 aa		4.08	□□□□□ -1.76
PTC1	YDL006W	NOP19	P53317	196 aa	Predicted RBP	4.08	□□□□□ -1.76
PTC1	YDL006W	BOR1	P53838	576 aa		4.08	□□□□□ -1.76
PTC1	YDL006W	SLM2	P53955	656 aa		4.08	□□□□□ -1.76
PTC1	YDL006W	GOT1	Q03554	138 aa		4.08	□□□□□ -1.76
PTC1	YDL006W	EMI1	Q04406	187 aa		4.08	□□□□□ -1.76
PTC1	YDL006W	SPC24	Q04477	213 aa		4.08	□□□□□ -1.76
PTC1	YDL006W	SRL2	Q12020	392 aa		4.08	□□□□□ -1.76
PTC1	YDL006W	SMF3	Q12078	473 aa	Predicted RBP	4.08	□□□□□ -1.76
PTC1	YDL006W	RPN5	Q12250	445 aa	Known RBP	4.08	□□□□□ -1.76
PTC1	YDL006W	YLR108C	Q12259	485 aa		4.08	□□□□□ -1.76
PTC1	YDL006W	PAR32	Q12515	295 aa	Known RBP	4.08	□□□□□ -1.76
PTC1	YDL006W	YPL247C	Q12523	523 aa		4.08	□□□□□ -1.76
PTC1	YDL006W	PHO84	P25297	587 aa	Known RBP	4.07	□□□□□ -1.76
PTC1	YDL006W	ITR1	P30605	584 aa		4.07	□□□□□ -1.76
PTC1	YDL006W	COX13	P32799	129 aa		4.07	□□□□□ -1.76
PTC1	YDL006W	IML3	P38265	245 aa		4.07	□□□□□ -1.76
PTC1	YDL006W	YHR045W	P38775	560 aa		4.07	□□□□□ -1.76
PTC1	YDL006W	UTP18	P40362	594 aa	Predicted RBP	4.07	□□□□□ -1.76
PTC1	YDL006W	COA1	P40452	197 aa		4.07	□□□□□ -1.76
PTC1	YDL006W	OST1	P41543	476 aa	Known RBP	4.07	□□□□□ -1.76
PTC1	YDL006W	COQ5	P49017	307 aa		4.07	□□□□□ -1.76
PTC1	YDL006W	SHY1	P53266	389 aa		4.07	□□□□□ -1.76
PTC1	YDL006W	CUS2	P53830	285 aa	Predicted RBP	4.07	□□□□□ -1.76
PTC1	YDL006W	YNL010W	P53981	241 aa	Known RBP	4.07	□□□□□ -1.76
PTC1	YDL006W	YMR102C	Q03177	834 aa		4.07	□□□□□ -1.76
PTC1	YDL006W	BCH1	Q05029	724 aa		4.07	□□□□□ -1.76
PTC1	YDL006W	RIF2	Q06208	395 aa		4.07	□□□□□ -1.76
PTC1	YDL006W	ATG10	Q07879	167 aa		4.07	□□□□□ -1.76
PTC1	YDL006W	YOL019W	Q08157	551 aa		4.07	□□□□□ -1.76
PTC1	YDL006W	YPL225W	Q08971	146 aa	Known RBP	4.07	□□□□□ -1.76
PTC1	YDL006W	YER078W-A	Q3E7A2	54 aa		4.07	□□□□□ -1.76
PTC1	YDL006W	COS2	P0CX12	379 aa		4.06	□□□□□ -1.76
PTC1	YDL006W	COS3	P0CX13	379 aa		4.06	□□□□□ -1.76
PTC1	YDL006W	SPR1	P32603	445 aa		4.06	□□□□□ -1.76
PTC1	YDL006W	SDH3	P33421	198 aa		4.06	□□□□□ -1.76
PTC1	YDL006W	FZO1	P38297	855 aa		4.06	□□□□□ -1.76
PTC1	YDL006W	MTC6	P38849	526 aa		4.06	□□□□□ -1.76
PTC1	YDL006W	FAD1	P38913	306 aa		4.06	□□□□□ -1.76
PTC1	YDL006W	TIM17	P39515	158 aa		4.06	□□□□□ -1.76
PTC1	YDL006W	COS4	P43542	379 aa		4.06	□□□□□ -1.76
PTC1	YDL006W	TMA22	P47089	198 aa	Predicted RBP	4.06	□□□□□ -1.76
PTC1	YDL006W	BIR1	P47134	954 aa		4.06	□□□□□ -1.76
PTC1	YDL006W	NBP35	P52920	328 aa		4.06	□□□□□ -1.76
PTC1	YDL006W	ZRG17	P53735	605 aa		4.06	□□□□□ -1.76
PTC1	YDL006W	YNL260C	P53846	198 aa		4.06	□□□□□ -1.76
PTC1	YDL006W	REX2	P54964	269 aa	Known RBP	4.06	□□□□□ -1.76
PTC1	YDL006W	TRM12	Q04235	462 aa		4.06	□□□□□ -1.76
PTC1	YDL006W	RRP9	Q06506	573 aa	Known RBP	4.06	□□□□□ -1.76
PTC1	YDL006W	NDL1	Q06568	189 aa		4.06	□□□□□ -1.76
PTC1	YDL006W	SRN2	Q99176	213 aa		4.06	□□□□□ -1.76
PTC1	YDL006W	FAB1	P34756	2278 aa		4.05	□□□□□ -1.76
PTC1	YDL006W	CDC21	P06785	304 aa		4.05	□□□□□ -1.76
PTC1	YDL006W	RPL1A	P0CX43	217 aa	Known RBP	4.05	□□□□□ -1.76
PTC1	YDL006W	RPL1B	P0CX44	217 aa	Known RBP	4.05	□□□□□ -1.76
PTC1	YDL006W	CBS2	P14905	389 aa		4.05	□□□□□ -1.76
PTC1	YDL006W	BUB2	P26448	306 aa	Predicted RBP	4.05	□□□□□ -1.76
PTC1	YDL006W	BAT1	P38891	393 aa	Known RBP	4.05	□□□□□ -1.76
PTC1	YDL006W	NPT1	P39683	429 aa	Known RBP	4.05	□□□□□ -1.76
PTC1	YDL006W	GIM4	P40005	111 aa	Known RBP	4.05	□□□□□ -1.76
PTC1	YDL006W	USE1	P53146	245 aa		4.05	□□□□□ -1.76
PTC1	YDL006W	YPL113C	Q02961	396 aa		4.05	□□□□□ -1.76
PTC1	YDL006W	MMT1	Q03218	510 aa		4.05	□□□□□ -1.76
PTC1	YDL006W	FMN1	Q03778	218 aa		4.05	□□□□□ -1.76
PTC1	YDL006W	SNX3	Q08826	162 aa	Known RBP	4.05	□□□□□ -1.76
PTC1	YDL006W	SAM4	Q08985	325 aa	Known RBP	4.05	□□□□□ -1.76
PTC1	YDL006W	VPS68	Q12016	184 aa		4.05	□□□□□ -1.76
PTC1	YDL006W	TPT1	Q12272	230 aa	Known RBP	4.05	□□□□□ -1.76
PTC1	YDL006W	ERV2	Q12284	196 aa		4.05	□□□□□ -1.76
PTC1	YDL006W	NAG1	Q8TGN9	163 aa		4.05	□□□□□ -1.76
PTC1	YDL006W	NUM1	Q00402	2748 aa		4.05	□□□□□ -1.76
PTC1	YDL006W	HHF1	P02309	103 aa	Known RBP	4.04	□□□□□ -1.76
PTC1	YDL006W	CPR4	P25334	318 aa		4.04	□□□□□ -1.76
PTC1	YDL006W	ARO2	P28777	376 aa	Known RBP	4.04	□□□□□ -1.76
PTC1	YDL006W	CYS4	P32582	507 aa	Known RBP	4.04	□□□□□ -1.76
PTC1	YDL006W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	4.04	□□□□□ -1.76	not detected
PTC1	YDL006W	RPS1A	P33442	255 aa	Known RBP	4.04	□□□□□ -1.76
PTC1	YDL006W	YEL073C	P39974	107 aa		4.04	□□□□□ -1.76
PTC1	YDL006W	SFH5	P47008	294 aa		4.04	□□□□□ -1.76
PTC1	YDL006W	YJR149W	P47177	404 aa		4.04	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms