RNA–Protein interactions for RNA: YAL004W

YAL004W, Transcript of Dubious open reading frame, yeast

Gene YAL004W, Length 648 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YAL004W	YAL004W	MUP1	P50276	574 aa		3.36	□□□□□ -1.87
YAL004W	YAL004W	MRM2	P53123	320 aa		3.36	□□□□□ -1.87
YAL004W	YAL004W	YGR151C	P53287	111 aa		3.36	□□□□□ -1.87
YAL004W	YAL004W	GND2	P53319	492 aa		3.36	□□□□□ -1.87
YAL004W	YAL004W	NUP116	Q02630	1113 aa		3.36	□□□□□ -1.87
YAL004W	YAL004W	PRM15	Q03262	622 aa		3.36	□□□□□ -1.87
YAL004W	YAL004W	RVB1	Q03940	463 aa	Known RBP	3.36	□□□□□ -1.87
YAL004W	YAL004W	DLT1	Q04216	342 aa		3.36	□□□□□ -1.87
YAL004W	YAL004W	HSP31	Q04432	237 aa		3.36	□□□□□ -1.87
YAL004W	YAL004W	SPO77	Q06134	477 aa		3.36	□□□□□ -1.87
YAL004W	YAL004W	YOL073C	Q08232	322 aa		3.36	□□□□□ -1.87
YAL004W	YAL004W	USV1	Q12132	391 aa		3.36	□□□□□ -1.87
YAL004W	YAL004W	MSH5	Q12175	901 aa		3.36	□□□□□ -1.87
YAL004W	YAL004W	YLR108C	Q12259	485 aa		3.36	□□□□□ -1.87
YAL004W	YAL004W	RNH203	Q12338	110 aa		3.36	□□□□□ -1.87
YAL004W	YAL004W	HRT3	Q12347	344 aa		3.36	□□□□□ -1.87
YAL004W	YAL004W	HIS1	P00498	297 aa	Known RBP	3.35	□□□□□ -1.87
YAL004W	YAL004W	OPI3	P05375	206 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	ADE5,7	P07244	802 aa	Known RBP	3.35	□□□□□ -1.87
YAL004W	YAL004W	RPL12A	P0CX53	165 aa	Known RBP	3.35	□□□□□ -1.87
YAL004W	YAL004W	RPL12B	P0CX54	165 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	RPL35A	P0CX84	120 aa	Known RBP	3.35	□□□□□ -1.87
YAL004W	YAL004W	RPL35B	P0CX85	120 aa	Known RBP	3.35	□□□□□ -1.87
YAL004W	YAL004W	SNF6	P18888	332 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	TYR1	P20049	452 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	AAT2	P23542	418 aa	Known RBP	3.35	□□□□□ -1.87
YAL004W	YAL004W	RPC19	P28000	142 aa	Known RBP	3.35	□□□□□ -1.87
YAL004W	YAL004W	PEX3	P28795	441 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	VMA5	P31412	392 aa	Known RBP	3.35	□□□□□ -1.87
YAL004W	YAL004W	CSE2	P33308	149 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	MTR2	P34232	184 aa	Known RBP	3.35	□□□□□ -1.87
YAL004W	YAL004W	YKL162C	P36052	402 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	ECM13	P38195	257 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	MIC12	P38341	106 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	YHI9	P38765	294 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	LYS12	P40495	371 aa	Known RBP	3.35	□□□□□ -1.87
YAL004W	YAL004W	SAS2	P40963	338 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	DIM1	P41819	318 aa	Known RBP	3.35	□□□□□ -1.87
YAL004W	YAL004W	COX16	P47081	118 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	USE1	P53146	245 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	SLX9	P53251	210 aa	Predicted RBP	3.35	□□□□□ -1.87
YAL004W	YAL004W	VAC7	P53950	1165 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	SLM2	P53955	656 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	OSH6	Q02201	448 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	YPL068C	Q02749	293 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	GIP3	Q03016	1276 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	PFA5	Q03289	374 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	NUP53	Q03790	475 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	KRE28	Q04431	385 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	DCR2	Q05924	578 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	BER1	Q06688	274 aa	Known RBP	3.35	□□□□□ -1.87
YAL004W	YAL004W	SWC7	Q06707	132 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	SNA4	Q07549	140 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	IRC10	Q08118	586 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	ENB1	Q08299	606 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	DDC1	Q08949	612 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	SAM4	Q08985	325 aa	Known RBP	3.35	□□□□□ -1.87
YAL004W	YAL004W	MLH3	Q12083	715 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	YPR022C	Q12139	1133 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	YMR030W-A	Q3E760	96 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	Q0010	Q9ZZX9	128 aa		3.35	□□□□□ -1.87
YAL004W	YAL004W	YPT1	P01123	206 aa	Known RBP	3.34	□□□□□ -1.87
YAL004W	YAL004W	SIR3	P06701	978 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	MRP2	P10663	115 aa	Predicted RBP	3.34	□□□□□ -1.87
YAL004W	YAL004W	REV1	P12689	985 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	HSP26	P15992	214 aa	Known RBP RIP-Chip data	3.34	□□□□□ -1.87	not detected
YAL004W	YAL004W	STE4	P18851	423 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	MRPS28	P21771	286 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	MNS1	P32906	549 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	FRE2	P36033	711 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	MRP21	P38175	177 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	POP7	P38291	140 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	PHO89	P38361	574 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	ARN1	P38731	627 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	RTC3	P38804	111 aa	Predicted RBP	3.34	□□□□□ -1.87
YAL004W	YAL004W	HAT2	P39984	401 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	ERG28	P40030	148 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	COA1	P40452	197 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	SYG1	P40528	902 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	ERG10	P41338	398 aa	Known RBP	3.34	□□□□□ -1.87
YAL004W	YAL004W	BUD13	P46947	266 aa	Predicted RBP	3.34	□□□□□ -1.87
YAL004W	YAL004W	IBA57	P47158	497 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	SSN8	P47821	323 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	YGL159W	P53110	370 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	YIF1	P53845	314 aa	Known RBP	3.34	□□□□□ -1.87
YAL004W	YAL004W	SPG3	Q04398	127 aa	Predicted RBP	3.34	□□□□□ -1.87
YAL004W	YAL004W	YLR012C	Q07927	99 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	3.34	□□□□□ -1.87	not detected
YAL004W	YAL004W	IRC13	Q08630	104 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	YOR365C	Q08844	703 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	YPQ1	Q12010	308 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	YLR049C	Q12110	428 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	NCE102	Q12207	173 aa	RIP-Chip data	3.34	□□□□□ -1.87	not detected
YAL004W	YAL004W	ATG34	Q12292	412 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	YDR524C-B	Q3E6R4	66 aa		3.34	□□□□□ -1.87
YAL004W	YAL004W	COX5A	P00424	153 aa		3.33	□□□□□ -1.88
YAL004W	YAL004W	ATP6	P00854	259 aa		3.33	□□□□□ -1.88
YAL004W	YAL004W	MES1	P00958	751 aa	Known RBP	3.33	□□□□□ -1.88
YAL004W	YAL004W	ARF1	P11076	181 aa	Known RBP	3.33	□□□□□ -1.88
YAL004W	YAL004W	SEC14	P24280	304 aa	Known RBP	3.33	□□□□□ -1.88

Retrieved 100 of 5,963 RNA–protein pairs in 54.5 ms