RNA–Protein interactions for RNA: YLR086W

SMC4, Transcript of Subunit of the condensin complex, yeast

Gene SMC4, Length 4,257 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMC4	YLR086W	OSW5	P40219	148 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	YIL029C	P40538	142 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	GAB1	P41733	394 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	YCH1	P42937	148 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	YAR1	P46683	200 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	COX16	P47081	118 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	BNS1	P50084	137 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	RVB1	Q03940	463 aa	Known RBP	1.29	□□□□□ -2.2
SMC4	YLR086W	AIM33	Q04516	312 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	RTN1	Q04947	295 aa	Known RBP	1.29	□□□□□ -2.2
SMC4	YLR086W	YPR091C	Q06833	770 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	TSR1	Q07381	788 aa	Known RBP	1.29	□□□□□ -2.2
SMC4	YLR086W	YDL144C	Q07589	356 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	MCT1	Q12283	360 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	YRM1	Q12340	786 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	FKS3	Q04952	1785 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	ATP6	P00854	259 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	RPS18A	P0CX55	146 aa	Known RBP	1.29	□□□□□ -2.2
SMC4	YLR086W	RPS18B	P0CX56	146 aa	Predicted RBP	1.29	□□□□□ -2.2
SMC4	YLR086W	DAL2	P25335	343 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	GIT1	P25346	518 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	LDS1	P31379	325 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	VMA5	P31412	392 aa	Known RBP	1.29	□□□□□ -2.2
SMC4	YLR086W	AGA1	P32323	725 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	KDX1	P36005	433 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	RCK2	P38623	610 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	TCD1	P38756	429 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	PEX18	P38855	283 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	RBG1	P39729	369 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	ATG18	P43601	500 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	GTO1	P48239	356 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	YGL260W	P53056	76 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	YGL039W	P53183	348 aa	Known RBP	1.29	□□□□□ -2.2
SMC4	YLR086W	VOA1	P53262	265 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	TDA1	Q03533	586 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	CSM3	Q04659	317 aa		1.29	□□□□□ -2.2
SMC4	YLR086W	PAA1	Q12447	191 aa	Known RBP	1.29	□□□□□ -2.2
SMC4	YLR086W	BNI1	P41832	1953 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	VPS63	O13549	108 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	RAD3	P06839	778 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	MKK1	P32490	508 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	SHE1	P38200	338 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	YHR182W	P38870	785 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	ALP1	P38971	573 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	RSM25	P40496	264 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	LSG1	P53145	640 aa	Known RBP	1.28	□□□□□ -2.2
SMC4	YLR086W	DBP6	P53734	629 aa	Known RBP	1.28	□□□□□ -2.2
SMC4	YLR086W	NAT4	Q04751	285 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	RIF2	Q06208	395 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	GAT3	Q07928	141 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	YDL199C	Q12407	687 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	EAF3	Q12432	401 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	YCR024C-B	Q3E7Z8	88 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	TUS1	Q06412	1307 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	RPS8A	P0CX39	200 aa	Known RBP	1.28	□□□□□ -2.2
SMC4	YLR086W	RPS8B	P0CX40	200 aa	Known RBP	1.28	□□□□□ -2.2
SMC4	YLR086W	UTR1	P21373	530 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	RBK1	P25332	333 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	ZIP1	P31111	875 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	YKT6	P36015	200 aa	Known RBP	1.28	□□□□□ -2.2
SMC4	YLR086W	AIM20	P40451	204 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	YFL067W	P43537	175 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	RIB4	P50861	169 aa	Predicted RBP	1.28	□□□□□ -2.2
SMC4	YLR086W	SCS3	P53012	380 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	BIO4	P53630	237 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	TRM112	P53738	135 aa	Predicted RBP	1.28	□□□□□ -2.2
SMC4	YLR086W	ALF1	P53904	254 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	VAC7	P53950	1165 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	SUR7	P54003	302 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	YLR297W	Q05899	129 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	YOR387C	Q08910	206 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	FCY22	Q12119	530 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	TIP41	Q12199	356 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	MDY2	Q12285	212 aa		1.28	□□□□□ -2.2
SMC4	YLR086W	PRB1	P09232	635 aa		1.28	□□□□□ -2.21
SMC4	YLR086W	UGA1	P17649	471 aa		1.28	□□□□□ -2.21
SMC4	YLR086W	RPL16A	P26784	199 aa	Known RBP	1.28	□□□□□ -2.21
SMC4	YLR086W	HXT1	P32465	570 aa		1.28	□□□□□ -2.21
SMC4	YLR086W	YKL187C	P34231	750 aa		1.28	□□□□□ -2.21
SMC4	YLR086W	RPC25	P35718	212 aa		1.28	□□□□□ -2.21
SMC4	YLR086W	KRE9	P39005	276 aa		1.28	□□□□□ -2.21
SMC4	YLR086W	SNL1	P40548	159 aa		1.28	□□□□□ -2.21
SMC4	YLR086W	GCD14	P46959	383 aa	Predicted RBP	1.28	□□□□□ -2.21
SMC4	YLR086W	SDT1	P53078	280 aa		1.28	□□□□□ -2.21
SMC4	YLR086W	YNL146W	P53906	100 aa		1.28	□□□□□ -2.21
SMC4	YLR086W	CAB5	Q03941	241 aa		1.28	□□□□□ -2.21
SMC4	YLR086W	MRPL35	Q06678	367 aa		1.28	□□□□□ -2.21
SMC4	YLR086W	MFG1	Q07684	458 aa		1.28	□□□□□ -2.21
SMC4	YLR086W	HTZ1	Q12692	134 aa	Known RBP	1.28	□□□□□ -2.21
SMC4	YLR086W	SSA3	P09435	649 aa	Known RBP	1.27	□□□□□ -2.21
SMC4	YLR086W	NAM9	P27929	486 aa		1.27	□□□□□ -2.21
SMC4	YLR086W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	1.27	□□□□□ -2.21	not detected
SMC4	YLR086W	CTM1	P38818	585 aa		1.27	□□□□□ -2.21
SMC4	YLR086W	PTH1	P38876	190 aa	Known RBP	1.27	□□□□□ -2.21
SMC4	YLR086W	CHL4	P38907	458 aa		1.27	□□□□□ -2.21
SMC4	YLR086W	SMC2	P38989	1170 aa	Known RBP	1.27	□□□□□ -2.21
SMC4	YLR086W	RTT105	P40063	208 aa		1.27	□□□□□ -2.21
SMC4	YLR086W	HAC1	P41546	238 aa		1.27	□□□□□ -2.21
SMC4	YLR086W	NAS6	P50086	228 aa		1.27	□□□□□ -2.21
SMC4	YLR086W	BUR2	Q05949	395 aa		1.27	□□□□□ -2.21

Retrieved 100 of 5,963 RNA–protein pairs in 12.4 ms