RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeastyeast

Gene VPS29, Length 849 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS29YHR012W PPH3P32345 308 aa6.74□□□□□ -1.33
VPS29YHR012W STS1P38637 319 aa6.74□□□□□ -1.33
VPS29YHR012W ALD2P47771 506 aa6.74□□□□□ -1.33
VPS29YHR012W ROM2P51862 1356 aaKnown RBP6.73□□□□□ -1.33
VPS29YHR012W HTA1P04911 132 aaKnown RBP6.73□□□□□ -1.33
VPS29YHR012W HTA2P04912 132 aa6.73□□□□□ -1.33
VPS29YHR012W YBL086CP38177 466 aa6.73□□□□□ -1.33
VPS29YHR012W ENP1P38333 483 aaKnown RBP6.73□□□□□ -1.33
VPS29YHR012W DOT5P40553 215 aa6.73□□□□□ -1.33
VPS29YHR012W MSB3P48566 633 aaPredicted RBP6.73□□□□□ -1.33
VPS29YHR012W LAM6Q08001 693 aa6.73□□□□□ -1.33
VPS29YHR012W LEU2P04173 364 aaPredicted RBP6.72□□□□□ -1.33
VPS29YHR012W XDJ1P39102 459 aa6.72□□□□□ -1.33
VPS29YHR012W GYP5Q12344 894 aa6.72□□□□□ -1.33
VPS29YHR012W PSK1P31374 1356 aa6.71□□□□□ -1.33
VPS29YHR012W ADE6P38972 1358 aaKnown RBP6.71□□□□□ -1.33
VPS29YHR012W SPE2P21182 396 aa6.71□□□□□ -1.34
VPS29YHR012W PRP40P33203 583 aaKnown RBP6.71□□□□□ -1.34
VPS29YHR012W MTR4P47047 1073 aaKnown RBP6.71□□□□□ -1.34
VPS29YHR012W SLM3Q12093 417 aa6.71□□□□□ -1.34
VPS29YHR012W TY4B-HP0C2J7 1802 aa6.71□□□□□ -1.34
VPS29YHR012W TY4B-JP47024 1803 aa6.71□□□□□ -1.34
VPS29YHR012W PTC4P38089 393 aa6.7□□□□□ -1.34
VPS29YHR012W PRP43P53131 767 aaKnown RBP6.7□□□□□ -1.34
VPS29YHR012W RSF2P46974 1380 aa6.69□□□□□ -1.34
VPS29YHR012W CSE4P36012 229 aa6.69□□□□□ -1.34
VPS29YHR012W URB1P34241 1764 aaKnown RBP6.69□□□□□ -1.34
VPS29YHR012W SSA1P10591 642 aaKnown RBP6.68□□□□□ -1.34
VPS29YHR012W YEL023CP39992 682 aa6.68□□□□□ -1.34
VPS29YHR012W CHZ1P40019 153 aaPredicted RBP6.68□□□□□ -1.34
VPS29YHR012W KIP3P53086 805 aaKnown RBP6.68□□□□□ -1.34
VPS29YHR012W SSA2P10592 639 aaKnown RBP6.67□□□□□ -1.34
VPS29YHR012W SSP1P38871 571 aa6.67□□□□□ -1.34
VPS29YHR012W FOX2Q02207 900 aaKnown RBP6.67□□□□□ -1.34
VPS29YHR012W YKL133CP36066 463 aa6.66□□□□□ -1.34
VPS29YHR012W NPR2P39923 615 aa6.66□□□□□ -1.34
VPS29YHR012W LYS4P49367 693 aaPredicted RBP6.66□□□□□ -1.34
VPS29YHR012W VRP1P37370 817 aa6.65□□□□□ -1.34
VPS29YHR012W RPS24AP0CX31 135 aaKnown RBP6.64□□□□□ -1.35
VPS29YHR012W RPS24BP0CX32 135 aaKnown RBP6.64□□□□□ -1.35
VPS29YHR012W DCW1P36091 449 aa6.64□□□□□ -1.35
VPS29YHR012W SPT7P35177 1332 aa6.64□□□□□ -1.35
VPS29YHR012W YRF1-3P0CX14 1859 aa6.64□□□□□ -1.35
VPS29YHR012W YRF1-7P0CX15 1859 aa6.64□□□□□ -1.35
VPS29YHR012W YRF1-6P53819 1859 aa6.64□□□□□ -1.35
VPS29YHR012W MGA2P40578 1113 aa6.63□□□□□ -1.35
VPS29YHR012W XKS1P42826 600 aa6.63□□□□□ -1.35
VPS29YHR012W MEC3Q02574 474 aa6.63□□□□□ -1.35
VPS29YHR012W CST9Q06032 482 aa6.63□□□□□ -1.35
VPS29YHR012W COBP00163 385 aa6.62□□□□□ -1.35
VPS29YHR012W FKS3Q04952 1785 aa6.62□□□□□ -1.35
VPS29YHR012W DPS1P04802 557 aaKnown RBP6.61□□□□□ -1.35
VPS29YHR012W RTF1P53064 558 aa6.6□□□□□ -1.35
VPS29YHR012W ALD3P54114 506 aa6.6□□□□□ -1.35
VPS29YHR012W YKR075CP36155 307 aa6.59□□□□□ -1.35
VPS29YHR012W CTH1P47976 325 aa6.58□□□□□ -1.36
VPS29YHR012W ELP4Q02884 456 aaKnown RBP6.58□□□□□ -1.36
VPS29YHR012W YRF1-4O13559 1382 aa6.57□□□□□ -1.36
VPS29YHR012W PDI1P17967 522 aaKnown RBP6.56□□□□□ -1.36
VPS29YHR012W ORC1P54784 914 aaPredicted RBP6.56□□□□□ -1.36
VPS29YHR012W PML39Q03760 334 aa6.55□□□□□ -1.36
VPS29YHR012W RGA2Q06407 1009 aa6.55□□□□□ -1.36
VPS29YHR012W RCR1P38212 213 aa6.54□□□□□ -1.36
VPS29YHR012W SAP155P43612 1002 aa6.54□□□□□ -1.36
VPS29YHR012W ATG13Q06628 738 aa6.54□□□□□ -1.36
VPS29YHR012W GAS4Q08271 471 aa6.54□□□□□ -1.36
VPS29YHR012W APC1P53886 1748 aa6.53□□□□□ -1.36
VPS29YHR012W YLR419WQ06698 1435 aaKnown RBP6.53□□□□□ -1.36
VPS29YHR012W GRX4P32642 244 aa6.53□□□□□ -1.36
VPS29YHR012W BUG1Q12191 341 aa6.53□□□□□ -1.36
VPS29YHR012W UTP22P53254 1237 aaPredicted RBP6.52□□□□□ -1.37
VPS29YHR012W FRK1Q03002 865 aaPredicted RBP6.52□□□□□ -1.37
VPS29YHR012W SIR4P11978 1358 aa6.52□□□□□ -1.37
VPS29YHR012W MLP1Q02455 1875 aaKnown RBP6.51□□□□□ -1.37
VPS29YHR012W SNF2P22082 1703 aa6.51□□□□□ -1.37
VPS29YHR012W GRX1P25373 110 aaKnown RBP6.51□□□□□ -1.37
VPS29YHR012W TAP42Q04372 366 aa6.51□□□□□ -1.37
VPS29YHR012W RAD4P14736 754 aa6.5□□□□□ -1.37
VPS29YHR012W RRT14P40470 206 aa6.5□□□□□ -1.37
VPS29YHR012W GRE2Q12068 342 aaKnown RBP6.5□□□□□ -1.37
VPS29YHR012W ARH1P48360 493 aa6.49□□□□□ -1.37
VPS29YHR012W ADE16P54113 591 aaKnown RBP6.49□□□□□ -1.37
VPS29YHR012W YDR344CQ05510 147 aa6.48□□□□□ -1.37
VPS29YHR012W YIL177CP40434 1758 aa6.48□□□□□ -1.37
VPS29YHR012W YJL225CP40889 1758 aa6.48□□□□□ -1.37
VPS29YHR012W SEC3P33332 1336 aaKnown RBP6.48□□□□□ -1.37
VPS29YHR012W RPO41P13433 1351 aaKnown RBP6.47□□□□□ -1.37
VPS29YHR012W CTT1P06115 562 aa6.47□□□□□ -1.37
VPS29YHR012W OSM1P21375 501 aaKnown RBP6.47□□□□□ -1.37
VPS29YHR012W HPC2Q01448 625 aa6.47□□□□□ -1.37
VPS29YHR012W YML133CQ03099 1374 aa6.46□□□□□ -1.37
VPS29YHR012W YLL067CQ07888 1374 aa6.46□□□□□ -1.37
VPS29YHR012W YLL066CQ99208 1374 aa6.46□□□□□ -1.37
VPS29YHR012W TOS1P38288 455 aa6.46□□□□□ -1.38
VPS29YHR012W MSN5P52918 1224 aa6.46□□□□□ -1.38
VPS29YHR012W CTF4Q01454 927 aa6.46□□□□□ -1.38
VPS29YHR012W YKL222CP35995 705 aa6.45□□□□□ -1.38
VPS29YHR012W EAF6P47128 113 aa6.45□□□□□ -1.38
VPS29YHR012W YBP2P53169 641 aa6.45□□□□□ -1.38
VPS29YHR012W RIM15P43565 1770 aa6.44□□□□□ -1.38
Retrieved 100 of 5,963 RNA–protein pairs in 40.5 ms