RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	ALR1	Q08269	859 aa		7.41	□□□□□ -1.22
CAF16	YFL028C	KOG1	P38873	1557 aa		7.41	□□□□□ -1.22
CAF16	YFL028C	GAL2	P13181	574 aa		7.4	□□□□□ -1.22
CAF16	YFL028C	FIG4	P42837	879 aa		7.4	□□□□□ -1.22
CAF16	YFL028C	STE20	Q03497	939 aa	Known RBP	7.4	□□□□□ -1.22
CAF16	YFL028C	GUT2	P32191	649 aa		7.39	□□□□□ -1.23
CAF16	YFL028C	PAC1	P39946	494 aa	Known RBP	7.39	□□□□□ -1.23
CAF16	YFL028C	ELP4	Q02884	456 aa	Known RBP	7.39	□□□□□ -1.23
CAF16	YFL028C	YPR097W	Q06839	1073 aa		7.39	□□□□□ -1.23
CAF16	YFL028C	RRN7	P40992	514 aa		7.38	□□□□□ -1.23
CAF16	YFL028C	BNI4	P53858	892 aa		7.38	□□□□□ -1.23
CAF16	YFL028C	PDC1	P06169	563 aa	Known RBP	7.37	□□□□□ -1.23
CAF16	YFL028C	ATG3	P40344	310 aa		7.37	□□□□□ -1.23
CAF16	YFL028C	FRA1	Q07825	749 aa		7.37	□□□□□ -1.23
CAF16	YFL028C	SOH1	P38633	127 aa		7.36	□□□□□ -1.23
CAF16	YFL028C	PTC2	P39966	464 aa	Known RBP	7.36	□□□□□ -1.23
CAF16	YFL028C	KXD1	P53158	218 aa		7.36	□□□□□ -1.23
CAF16	YFL028C	SEN54	Q02825	467 aa	Predicted RBP	7.36	□□□□□ -1.23
CAF16	YFL028C	PRT1	P06103	763 aa	Known RBP	7.35	□□□□□ -1.23
CAF16	YFL028C	YPR084W	Q06821	456 aa		7.35	□□□□□ -1.23
CAF16	YFL028C	YPR015C	Q12531	247 aa		7.35	□□□□□ -1.23
CAF16	YFL028C	SPT23	P35210	1082 aa		7.34	□□□□□ -1.23
CAF16	YFL028C	FKH1	P40466	484 aa		7.34	□□□□□ -1.23
CAF16	YFL028C	YEL077C	Q3E7X8	1277 aa		7.34	□□□□□ -1.23
CAF16	YFL028C	SPA2	P23201	1466 aa	Known RBP	7.33	□□□□□ -1.24
CAF16	YFL028C	PHO87	P25360	923 aa		7.33	□□□□□ -1.24
CAF16	YFL028C	PAT1	P25644	796 aa	Known RBP	7.33	□□□□□ -1.24
CAF16	YFL028C	YBL113C	Q7M4S9	792 aa		7.33	□□□□□ -1.24
CAF16	YFL028C	HEM3	P28789	327 aa		7.31	□□□□□ -1.24
CAF16	YFL028C	TPS3	P38426	1054 aa	Known RBP	7.31	□□□□□ -1.24
CAF16	YFL028C	HXT10	P43581	546 aa		7.31	□□□□□ -1.24
CAF16	YFL028C	KAR5	Q04746	504 aa		7.31	□□□□□ -1.24
CAF16	YFL028C	HAP4	P14064	554 aa		7.3	□□□□□ -1.24
CAF16	YFL028C	SPT16	P32558	1035 aa	Known RBP	7.3	□□□□□ -1.24
CAF16	YFL028C	ERP5	P38819	212 aa		7.3	□□□□□ -1.24
CAF16	YFL028C	ACS2	P52910	683 aa	Known RBP	7.3	□□□□□ -1.24
CAF16	YFL028C	NOP7	P53261	605 aa	Known RBP	7.3	□□□□□ -1.24
CAF16	YFL028C	UTP13	Q05946	817 aa	Known RBP	7.3	□□□□□ -1.24
CAF16	YFL028C	HIR3	P47171	1648 aa		7.3	□□□□□ -1.24
CAF16	YFL028C	STM1	P39015	273 aa	Known RBP	7.29	□□□□□ -1.24
CAF16	YFL028C	APL6	P46682	809 aa		7.29	□□□□□ -1.24
CAF16	YFL028C	SNU71	P53207	620 aa	Known RBP	7.29	□□□□□ -1.24
CAF16	YFL028C	VAC17	P25591	423 aa		7.28	□□□□□ -1.24
CAF16	YFL028C	IPL1	P38991	367 aa		7.28	□□□□□ -1.24
CAF16	YFL028C	ROM1	P53046	1155 aa		7.28	□□□□□ -1.24
CAF16	YFL028C	PDI1	P17967	522 aa	Known RBP	7.27	□□□□□ -1.25
CAF16	YFL028C	RRN6	P32786	894 aa		7.27	□□□□□ -1.25
CAF16	YFL028C	CWC15	Q03772	175 aa	Known RBP	7.27	□□□□□ -1.25
CAF16	YFL028C	PUF6	Q04373	656 aa	Known RBP	7.27	□□□□□ -1.25
CAF16	YFL028C	ITT1	Q04638	464 aa		7.27	□□□□□ -1.25
CAF16	YFL028C	IXR1	P33417	597 aa		7.26	□□□□□ -1.25
CAF16	YFL028C	RRD1	P40454	393 aa	Known RBP	7.26	□□□□□ -1.25
CAF16	YFL028C	TSC13	Q99190	310 aa		7.26	□□□□□ -1.25
CAF16	YFL028C	SSN2	P38931	1420 aa		7.26	□□□□□ -1.25
CAF16	YFL028C	MIP1	P15801	1254 aa		7.25	□□□□□ -1.25
CAF16	YFL028C	GRS1	P38088	690 aa	Known RBP	7.25	□□□□□ -1.25
CAF16	YFL028C	YML082W	Q04533	649 aa	Known RBP	7.25	□□□□□ -1.25
CAF16	YFL028C	ISR1	Q06098	443 aa	Known RBP	7.25	□□□□□ -1.25
CAF16	YFL028C	GAS4	Q08271	471 aa		7.25	□□□□□ -1.25
CAF16	YFL028C	AIR2	Q12476	344 aa	Known RBP	7.25	□□□□□ -1.25
CAF16	YFL028C	SEC20	P28791	383 aa		7.24	□□□□□ -1.25
CAF16	YFL028C	HAL5	P38970	855 aa	Known RBP	7.24	□□□□□ -1.25
CAF16	YFL028C	PNP1	Q05788	311 aa		7.24	□□□□□ -1.25
CAF16	YFL028C	PUN1	Q06991	263 aa		7.24	□□□□□ -1.25
CAF16	YFL028C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	7.24	□□□□□ -1.25	not detected
CAF16	YFL028C	TPD3	P31383	635 aa		7.23	□□□□□ -1.25
CAF16	YFL028C	PRE3	P38624	215 aa		7.22	□□□□□ -1.25
CAF16	YFL028C	YHL050C	P38721	697 aa		7.22	□□□□□ -1.25
CAF16	YFL028C	YHR219W	P38900	624 aa		7.22	□□□□□ -1.25
CAF16	YFL028C	GYP1	Q08484	637 aa		7.22	□□□□□ -1.25
CAF16	YFL028C	MOD5	P07884	428 aa		7.21	□□□□□ -1.26
CAF16	YFL028C	TRL1	P09880	827 aa	Known RBP	7.21	□□□□□ -1.26
CAF16	YFL028C	VAN1	P23642	535 aa		7.21	□□□□□ -1.26
CAF16	YFL028C	AIM9	P40053	627 aa	Known RBP	7.21	□□□□□ -1.26
CAF16	YFL028C	YFL034W	P43564	1073 aa		7.21	□□□□□ -1.26
CAF16	YFL028C	MSC6	Q08818	692 aa	Known RBP	7.21	□□□□□ -1.26
CAF16	YFL028C	FUR4	P05316	633 aa	Known RBP	7.2	□□□□□ -1.26
CAF16	YFL028C	SRS2	P12954	1174 aa		7.2	□□□□□ -1.26
CAF16	YFL028C	KIP2	P28743	706 aa		7.2	□□□□□ -1.26
CAF16	YFL028C	BOL3	P39724	118 aa		7.2	□□□□□ -1.26
CAF16	YFL028C	HDA3	Q06623	655 aa		7.2	□□□□□ -1.26
CAF16	YFL028C	ATG20	Q07528	640 aa		7.2	□□□□□ -1.26
CAF16	YFL028C	MDJ2	P42834	146 aa		7.19	□□□□□ -1.26
CAF16	YFL028C	BMT6	Q12291	365 aa		7.19	□□□□□ -1.26
CAF16	YFL028C	TRS33	Q99394	268 aa		7.19	□□□□□ -1.26
CAF16	YFL028C	XRN1	P22147	1528 aa	Known RBP	7.18	□□□□□ -1.26
CAF16	YFL028C	ASF1	P32447	279 aa		7.18	□□□□□ -1.26
CAF16	YFL028C	MET10	P39692	1035 aa		7.18	□□□□□ -1.26
CAF16	YFL028C	THI12	P42883	340 aa		7.18	□□□□□ -1.26
CAF16	YFL028C	THI5	P43534	340 aa		7.18	□□□□□ -1.26
CAF16	YFL028C	THI11	P47183	340 aa		7.18	□□□□□ -1.26
CAF16	YFL028C	ATG1	P53104	897 aa		7.18	□□□□□ -1.26
CAF16	YFL028C	THI13	Q07748	340 aa		7.18	□□□□□ -1.26
CAF16	YFL028C	BUD31	P25337	157 aa	Predicted RBP	7.17	□□□□□ -1.26
CAF16	YFL028C	NTH2	P35172	780 aa		7.17	□□□□□ -1.26
CAF16	YFL028C	PAM1	P37304	830 aa	Known RBP	7.17	□□□□□ -1.26
CAF16	YFL028C	GLO3	P38682	493 aa	Known RBP	7.17	□□□□□ -1.26
CAF16	YFL028C	SAS4	Q04003	481 aa		7.17	□□□□□ -1.26
CAF16	YFL028C	ALD4	P46367	519 aa	Known RBP	7.16	□□□□□ -1.26
CAF16	YFL028C	APP1	P53933	587 aa		7.16	□□□□□ -1.26

Retrieved 100 of 5,963 RNA–protein pairs in 8.5 ms