RNA–Protein interactions for RNA: YER118C

SHO1, Transcript of Transmembrane osmosensor for filamentous growth and HOG pathways, yeastyeast

Gene SHO1, Length 1,104 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHO1YER118C NAF1P53919 492 aaKnown RBP8.33□□□□□ -1.08
SHO1YER118C VPS16Q03308 798 aa8.33□□□□□ -1.08
SHO1YER118C FRT1Q99332 602 aa8.33□□□□□ -1.08
SHO1YER118C MAD1P40957 749 aa8.32□□□□□ -1.08
SHO1YER118C BUD6P41697 788 aa8.32□□□□□ -1.08
SHO1YER118C YGL081WP53156 320 aa8.32□□□□□ -1.08
SHO1YER118C SSF2Q12153 453 aaPredicted RBP8.32□□□□□ -1.08
SHO1YER118C MCM16Q12262 181 aa8.32□□□□□ -1.08
SHO1YER118C STI1P15705 589 aaKnown RBP RIP-Chip data8.31□□□□□ -1.08not detected
SHO1YER118C SOL3P38858 249 aa8.31□□□□□ -1.08
SHO1YER118C ACF4P47129 309 aa8.31□□□□□ -1.08
SHO1YER118C PNP1Q05788 311 aa8.31□□□□□ -1.08
SHO1YER118C PIN2Q12057 282 aa8.31□□□□□ -1.08
SHO1YER118C GAP1P19145 602 aaPredicted RBP8.3□□□□□ -1.08
SHO1YER118C PBP2P38151 413 aaKnown RBP RIP-Chip data8.3□□□□□ -1.08not detected
SHO1YER118C VMA1P17255 1071 aaKnown RBP8.29□□□□□ -1.08
SHO1YER118C QDR1P40475 563 aa8.29□□□□□ -1.08
SHO1YER118C YPR109WQ06104 294 aa8.29□□□□□ -1.08
SHO1YER118C YGR161W-CQ3E744 92 aa8.29□□□□□ -1.08
SHO1YER118C CDC53Q12018 815 aaKnown RBP8.28□□□□□ -1.08
SHO1YER118C WRS1Q12109 432 aaKnown RBP8.28□□□□□ -1.08
SHO1YER118C FUR4P05316 633 aaKnown RBP8.27□□□□□ -1.09
SHO1YER118C GLO3P38682 493 aaKnown RBP8.27□□□□□ -1.09
SHO1YER118C ENV9Q08651 330 aa8.27□□□□□ -1.09
SHO1YER118C CLN2P20438 545 aa8.26□□□□□ -1.09
SHO1YER118C PHO87P25360 923 aa8.26□□□□□ -1.09
SHO1YER118C NSR1P27476 414 aaKnown RBP RIP-Chip data8.26□□□□□ -1.09not detected
SHO1YER118C MNN1P39106 762 aa8.26□□□□□ -1.09
SHO1YER118C YJR142WP47173 342 aa8.26□□□□□ -1.09
SHO1YER118C CSC1Q06538 782 aa8.26□□□□□ -1.09
SHO1YER118C YDL121CQ07541 149 aa8.26□□□□□ -1.09
SHO1YER118C YOR131CQ12486 218 aa8.26□□□□□ -1.09
SHO1YER118C RMD1Q03441 430 aa8.25□□□□□ -1.09
SHO1YER118C BDF2Q07442 638 aa8.25□□□□□ -1.09
SHO1YER118C SRS2P12954 1174 aa8.24□□□□□ -1.09
SHO1YER118C MIP1P15801 1254 aa8.24□□□□□ -1.09
SHO1YER118C MCM2P29469 868 aa8.24□□□□□ -1.09
SHO1YER118C GAL11P19659 1081 aa8.23□□□□□ -1.09
SHO1YER118C SLY41P22215 453 aa8.23□□□□□ -1.09
SHO1YER118C SSD1P24276 1250 aaKnown RBP RIP-Chip data8.23□□□□□ -1.09not detected
SHO1YER118C UBP12P39538 1254 aa8.23□□□□□ -1.09
SHO1YER118C SPR28Q04921 423 aa8.23□□□□□ -1.09
SHO1YER118C PUN1Q06991 263 aa8.23□□□□□ -1.09
SHO1YER118C BRE1Q07457 700 aaKnown RBP8.23□□□□□ -1.09
SHO1YER118C HAP4P14064 554 aa8.22□□□□□ -1.09
SHO1YER118C VMA4P22203 233 aaKnown RBP8.22□□□□□ -1.09
SHO1YER118C ISF1P32488 338 aa8.22□□□□□ -1.09
SHO1YER118C MNN4P36044 1178 aa8.22□□□□□ -1.09
SHO1YER118C TY4A-JP47023 414 aa8.22□□□□□ -1.09
SHO1YER118C ROM1P53046 1155 aa8.22□□□□□ -1.09
SHO1YER118C UTP14Q04500 899 aaKnown RBP8.22□□□□□ -1.09
SHO1YER118C MET6P05694 767 aaKnown RBP8.21□□□□□ -1.1
SHO1YER118C GRX7P38068 203 aa8.21□□□□□ -1.1
SHO1YER118C BOI2P39969 1040 aa8.21□□□□□ -1.1
SHO1YER118C EMP47P43555 445 aa8.21□□□□□ -1.1
SHO1YER118C KIP3P53086 805 aaKnown RBP8.21□□□□□ -1.1
SHO1YER118C ECM16Q04217 1267 aaKnown RBP8.21□□□□□ -1.1
SHO1YER118C ESF1Q06344 628 aaKnown RBP8.21□□□□□ -1.1
SHO1YER118C SPT2P06843 333 aaPredicted RBP8.2□□□□□ -1.1
SHO1YER118C ENP1P38333 483 aaKnown RBP8.2□□□□□ -1.1
SHO1YER118C RTT106P40161 455 aa8.2□□□□□ -1.1
SHO1YER118C ACS2P52910 683 aaKnown RBP8.2□□□□□ -1.1
SHO1YER118C NST1P53935 1240 aa8.2□□□□□ -1.1
SHO1YER118C TMA64Q04600 565 aaKnown RBP8.2□□□□□ -1.1
SHO1YER118C PIB1Q06651 286 aa8.2□□□□□ -1.1
SHO1YER118C RPA135P22138 1203 aaKnown RBP8.19□□□□□ -1.1
SHO1YER118C MSH4P40965 878 aaPredicted RBP8.19□□□□□ -1.1
SHO1YER118C YOL036WQ08206 761 aa8.19□□□□□ -1.1
SHO1YER118C KAR1P11927 433 aa8.18□□□□□ -1.1
SHO1YER118C TRM1P15565 570 aaKnown RBP8.18□□□□□ -1.1
SHO1YER118C SEC6P32844 805 aa8.18□□□□□ -1.1
SHO1YER118C RPT1P33299 467 aaKnown RBP8.18□□□□□ -1.1
SHO1YER118C YEN1P40028 759 aa8.18□□□□□ -1.1
SHO1YER118C BUB1P41695 1021 aaKnown RBP RIP-Chip data8.18□□□□□ -1.1not detected
SHO1YER118C CEF1Q03654 590 aaPredicted RBP8.17□□□□□ -1.1
SHO1YER118C TFB4Q12004 338 aa8.17□□□□□ -1.1
SHO1YER118C MST1P07236 462 aa8.16□□□□□ -1.1
SHO1YER118C PHO4P07270 312 aaKnown RBP8.16□□□□□ -1.1
SHO1YER118C RPP1BP10622 106 aaKnown RBP8.16□□□□□ -1.1
SHO1YER118C ERP2P39704 215 aa8.16□□□□□ -1.1
SHO1YER118C NUP82P40368 713 aa8.16□□□□□ -1.1
SHO1YER118C AIM21P40563 679 aa8.16□□□□□ -1.1
SHO1YER118C YAP5P40574 245 aa8.16□□□□□ -1.1
SHO1YER118C MTO1P53070 669 aa8.16□□□□□ -1.1
SHO1YER118C DNM1P54861 757 aa8.16□□□□□ -1.1
SHO1YER118C GAS4Q08271 471 aa8.16□□□□□ -1.1
SHO1YER118C SAM3Q08986 587 aa8.16□□□□□ -1.1
SHO1YER118C PEP7P32609 515 aa8.15□□□□□ -1.1
SHO1YER118C ATG3P40344 310 aa8.15□□□□□ -1.1
SHO1YER118C TRS120Q04183 1289 aa8.15□□□□□ -1.1
SHO1YER118C GPI13Q07830 1017 aa8.15□□□□□ -1.1
SHO1YER118C LSO1Q3E827 93 aa8.15□□□□□ -1.1
SHO1YER118C PWP2P25635 923 aaKnown RBP8.14□□□□□ -1.11
SHO1YER118C MNR2P35724 969 aa8.14□□□□□ -1.11
SHO1YER118C TAT2P38967 592 aa8.14□□□□□ -1.11
SHO1YER118C ILV3P39522 585 aaKnown RBP8.14□□□□□ -1.11
SHO1YER118C RTF1P53064 558 aa8.14□□□□□ -1.11
SHO1YER118C HUL5P53119 910 aa8.14□□□□□ -1.11
SHO1YER118C YNL115CP53925 644 aa8.14□□□□□ -1.11
SHO1YER118C PPM2Q08282 695 aa8.14□□□□□ -1.11
Retrieved 100 of 5,963 RNA–protein pairs in 59.6 ms