RNA–Protein interactions for RNA: ENST00000625842.2

VPS8-227, Transcript of VPS8, CORVET complex subunit, humanhuman

APPRIS P4 TSL 5 BASIC

Gene VPS8, Length 4,969 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8-227ENST00000625842 RAPGEF2Q9Y4G8 1499 aa13.97□□□□□ -0.17
VPS8-227ENST00000625842 ROCK2O75116 1388 aaKnown RBP13.97□□□□□ -0.17
VPS8-227ENST00000625842 PPP1R1BQ9UD71 204 aaPredicted RBP13.96□□□□□ -0.17
VPS8-227ENST00000625842 VPS37DQ86XT2 251 aa13.96□□□□□ -0.17
VPS8-227ENST00000625842 DDX58O95786 925 aaKnown RBP13.95□□□□□ -0.18
VPS8-227ENST00000625842 KTN1Q86UP2 1357 aaKnown RBP13.95□□□□□ -0.18
VPS8-227ENST00000625842 VPS53Q5VIR6 699 aa13.94□□□□□ -0.18
VPS8-227ENST00000625842 KIF3AQ9Y496 699 aa13.94□□□□□ -0.18
VPS8-227ENST00000625842 PDE3BQ13370 1112 aa13.93□□□□□ -0.18
VPS8-227ENST00000625842 TXNDC2Q86VQ3 553 aa13.93□□□□□ -0.18
VPS8-227ENST00000625842 PIP4K2BP78356 416 aa13.92□□□□□ -0.18
VPS8-227ENST00000625842 ATAD2BQ9ULI0 1458 aa13.91□□□□□ -0.18
VPS8-227ENST00000625842 TOMM22Q9NS69 142 aa13.91□□□□□ -0.18
VPS8-227ENST00000625842 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.9□□□□□ -0.18
VPS8-227ENST00000625842 NLRP2Q9NX02 1062 aa13.9□□□□□ -0.18
VPS8-227ENST00000625842 NUTM2DQ5VT03 806 aaPredicted RBP13.9□□□□□ -0.18
VPS8-227ENST00000625842 DHX57Q6P158 1386 aaKnown RBP13.9□□□□□ -0.19
VPS8-227ENST00000625842 NUTM2BA6NNL0 878 aaPredicted RBP13.89□□□□□ -0.19
VPS8-227ENST00000625842 NUTM2EB1AL46 878 aaPredicted RBP13.89□□□□□ -0.19
VPS8-227ENST00000625842 NUTM2AQ8IVF1 878 aaPredicted RBP13.89□□□□□ -0.19
VPS8-227ENST00000625842 RASSF8Q8NHQ8 419 aa13.89□□□□□ -0.19
VPS8-227ENST00000625842 CEP89Q96ST8 783 aa13.89□□□□□ -0.19
VPS8-227ENST00000625842 TRAK1Q9UPV9 953 aa13.89□□□□□ -0.19
VPS8-227ENST00000625842 FBXW7Q969H0 707 aa13.89□□□□□ -0.19
VPS8-227ENST00000625842 CCDC144AA2RUR9 1427 aa13.88□□□□□ -0.19
VPS8-227ENST00000625842 RALBP1Q15311 655 aa13.88□□□□□ -0.19
VPS8-227ENST00000625842 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.88□□□□□ -0.19
VPS8-227ENST00000625842 PTMAP06454 111 aaKnown RBP13.87□□□□□ -0.19
VPS8-227ENST00000625842 AKAP17AQ02040 695 aaKnown RBP13.86□□□□□ -0.19
VPS8-227ENST00000625842 CGNL1Q0VF96 1302 aa13.86□□□□□ -0.19
VPS8-227ENST00000625842 MPHOSPH9Q99550 1183 aa13.86□□□□□ -0.19
VPS8-227ENST00000625842 SYNE3Q6ZMZ3 975 aa13.86□□□□□ -0.19
VPS8-227ENST00000625842 CCDC88BA6NC98 1476 aa13.86□□□□□ -0.19
VPS8-227ENST00000625842 GAPVD1Q14C86 1478 aa13.85□□□□□ -0.19
VPS8-227ENST00000625842 TOM1O60784 492 aa13.85□□□□□ -0.19
VPS8-227ENST00000625842 CPLX2Q6PUV4 134 aaKnown RBP13.84□□□□□ -0.19
VPS8-227ENST00000625842 HSP90AB1P08238 724 aaKnown RBP13.83□□□□□ -0.2
VPS8-227ENST00000625842 HIRIP3Q9BW71 556 aaPredicted RBP13.83□□□□□ -0.2
VPS8-227ENST00000625842 MIA2Q96PC5 1412 aa13.83□□□□□ -0.2
VPS8-227ENST00000625842 CCDC43Q96MW1 224 aaKnown RBP13.83□□□□□ -0.2
VPS8-227ENST00000625842 ESCO1Q5FWF5 840 aa13.82□□□□□ -0.2
VPS8-227ENST00000625842 WWC2Q6AWC2 1192 aa13.82□□□□□ -0.2
VPS8-227ENST00000625842 R3HCC1Q9Y3T6 440 aaKnown RBP13.82□□□□□ -0.2
VPS8-227ENST00000625842 GRIN2BQ13224 1484 aa13.8□□□□□ -0.2
VPS8-227ENST00000625842 MINK1Q8N4C8 1332 aaPredicted RBP13.8□□□□□ -0.2
VPS8-227ENST00000625842 SLC4A10Q6U841 1118 aa13.8□□□□□ -0.2
VPS8-227ENST00000625842 NLRP13Q86W25 1043 aa13.8□□□□□ -0.2
VPS8-227ENST00000625842 RWDD1Q9H446 243 aaPredicted RBP13.8□□□□□ -0.2
VPS8-227ENST00000625842 SMG6Q86US8 1419 aaKnown RBP13.79□□□□□ -0.2
VPS8-227ENST00000625842 MROH2BQ7Z745 1585 aa13.79□□□□□ -0.2
VPS8-227ENST00000625842 TPM4P67936 248 aa13.79□□□□□ -0.2
VPS8-227ENST00000625842 RAD21O60216 631 aa13.79□□□□□ -0.2
VPS8-227ENST00000625842 TATP17735 454 aaPredicted RBP13.79□□□□□ -0.2
VPS8-227ENST00000625842 SLC52A1Q9NWF4 448 aa13.79□□□□□ -0.2
VPS8-227ENST00000625842 IFT140Q96RY7 1462 aa13.78□□□□□ -0.2
VPS8-227ENST00000625842 NLRP6P59044 892 aa13.78□□□□□ -0.2
VPS8-227ENST00000625842 MRC2Q9UBG0 1479 aa13.78□□□□□ -0.2
VPS8-227ENST00000625842 PRDM11Q9NQV5 511 aa13.78□□□□□ -0.2
VPS8-227ENST00000625842 C9orf78Q9NZ63 289 aaPredicted RBP13.78□□□□□ -0.2
VPS8-227ENST00000625842 TOP2AP11388 1531 aaKnown RBP13.77□□□□□ -0.21
VPS8-227ENST00000625842 PLEKHO1Q53GL0 409 aaPredicted RBP13.76□□□□□ -0.21
VPS8-227ENST00000625842 STRN4Q9NRL3 753 aa13.76□□□□□ -0.21
VPS8-227ENST00000625842 KIF6Q6ZMV9 814 aa13.76□□□□□ -0.21
VPS8-227ENST00000625842 GTF3C3Q9Y5Q9 886 aa13.76□□□□□ -0.21
VPS8-227ENST00000625842 SYNJ2O15056 1496 aa13.76□□□□□ -0.21
VPS8-227ENST00000625842 DHX16O60231 1041 aaKnown RBP13.76□□□□□ -0.21
VPS8-227ENST00000625842 VPS8Q8N3P4 1428 aa13.76□□□□□ -0.21
VPS8-227ENST00000625842 PHLDB1Q86UU1 1377 aa13.75□□□□□ -0.21
VPS8-227ENST00000625842 HSCBQ8IWL3 235 aa13.75□□□□□ -0.21
VPS8-227ENST00000625842 TOM1L2Q6ZVM7 507 aa13.75□□□□□ -0.21
VPS8-227ENST00000625842 CCDC47Q96A33 483 aaKnown RBP13.75□□□□□ -0.21
VPS8-227ENST00000625842 ITPRIPQ8IWB1 547 aa13.75□□□□□ -0.21
VPS8-227ENST00000625842 PLEKHH2Q8IVE3 1493 aa13.74□□□□□ -0.21
VPS8-227ENST00000625842 CSPP1Q1MSJ5 1256 aa13.73□□□□□ -0.21
VPS8-227ENST00000625842 ABTB2Q8N961 1025 aa13.73□□□□□ -0.21
VPS8-227ENST00000625842 USP35Q9P2H5 1018 aa13.73□□□□□ -0.21
VPS8-227ENST00000625842 NCAPD3P42695 1498 aa13.73□□□□□ -0.21
VPS8-227ENST00000625842 APBB1O00213 710 aa13.73□□□□□ -0.21
VPS8-227ENST00000625842 NGEFQ8N5V2 710 aa13.73□□□□□ -0.21
VPS8-227ENST00000625842 NGLY1Q96IV0 654 aa13.73□□□□□ -0.21
VPS8-227ENST00000625842 FHOD3Q2V2M9 1422 aa13.73□□□□□ -0.21
VPS8-227ENST00000625842 HSP90AB4PQ58FF6 505 aa13.72□□□□□ -0.21
VPS8-227ENST00000625842 PRG4Q92954 1404 aaPredicted RBP13.72□□□□□ -0.21
VPS8-227ENST00000625842 GNL3LQ9NVN8 582 aaKnown RBP13.72□□□□□ -0.21
VPS8-227ENST00000625842 TRDNQ13061 729 aa13.72□□□□□ -0.21
VPS8-227ENST00000625842 SPG7Q9UQ90 795 aa13.72□□□□□ -0.21
VPS8-227ENST00000625842 TRIM6-TRIM34B2RNG4 842 aa13.72□□□□□ -0.21
VPS8-227ENST00000625842 SIN3AQ96ST3 1273 aa13.72□□□□□ -0.21
VPS8-227ENST00000625842 TMOD2Q9NZR1 351 aa13.71□□□□□ -0.21
VPS8-227ENST00000625842 LRPPRCP42704 1394 aaKnown RBP13.71□□□□□ -0.21
VPS8-227ENST00000625842 ERICH2A1L162 156 aa13.71□□□□□ -0.21
VPS8-227ENST00000625842 ROCK1Q13464 1354 aa13.7□□□□□ -0.22
VPS8-227ENST00000625842 PLCB2Q00722 1185 aa13.7□□□□□ -0.22
VPS8-227ENST00000625842 NBPF8Q3BBV2 869 aa13.7□□□□□ -0.22
VPS8-227ENST00000625842 NBPF14Q5TI25 921 aa13.7□□□□□ -0.22
VPS8-227ENST00000625842 PMFBP1Q8TBY8 1022 aa13.7□□□□□ -0.22
VPS8-227ENST00000625842 ZNF692Q9BU19 519 aaPredicted RBP13.7□□□□□ -0.22
VPS8-227ENST00000625842 RBM42Q9BTD8 480 aaKnown RBP13.7□□□□□ -0.22
VPS8-227ENST00000625842 MYOM3Q5VTT5 1437 aa13.7□□□□□ -0.22
VPS8-227ENST00000625842 DIAPH1O60610 1272 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms