RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-215ENST00000622629 RRP1P56182 461 aaKnown RBP16.64■□□□□ 0.26
MSH6-215ENST00000622629 GOLGA2Q08379 1002 aa16.64■□□□□ 0.25
MSH6-215ENST00000622629 FAM69CQ0P6D2 419 aa16.64■□□□□ 0.25
MSH6-215ENST00000622629 TROQ12816 1431 aaPredicted RBP16.64■□□□□ 0.25
MSH6-215ENST00000622629 NUTM2DQ5VT03 806 aaPredicted RBP16.64■□□□□ 0.25
MSH6-215ENST00000622629 SRPK2P78362 688 aaKnown RBP16.63■□□□□ 0.25
MSH6-215ENST00000622629 MAPK8IP3Q9UPT6 1336 aa16.63■□□□□ 0.25
MSH6-215ENST00000622629 WDR62O43379 1518 aa16.62■□□□□ 0.25
MSH6-215ENST00000622629 HECW1Q76N89 1606 aa16.62■□□□□ 0.25
MSH6-215ENST00000622629 CUL7Q14999 1698 aa16.62■□□□□ 0.25
MSH6-215ENST00000622629 IPO9Q96P70 1041 aaKnown RBP16.62■□□□□ 0.25
MSH6-215ENST00000622629 KIAA1107Q9UPP5 1409 aa16.61■□□□□ 0.25
MSH6-215ENST00000622629 PTPN23Q9H3S7 1636 aa16.61■□□□□ 0.25
MSH6-215ENST00000622629 IQGAP2Q13576 1575 aa16.61■□□□□ 0.25
MSH6-215ENST00000622629 ANKRD30BQ9BXX2 1392 aa16.61■□□□□ 0.25
MSH6-215ENST00000622629 TRAK1Q9UPV9 953 aa16.61■□□□□ 0.25
MSH6-215ENST00000622629 BECN1Q14457 450 aa16.6■□□□□ 0.25
MSH6-215ENST00000622629 PLB1Q6P1J6 1458 aa16.6■□□□□ 0.25
MSH6-215ENST00000622629 FANCIQ9NVI1 1328 aa16.59■□□□□ 0.25
MSH6-215ENST00000622629 U2AF1L5P0DN76 240 aaPredicted RBP16.59■□□□□ 0.25
MSH6-215ENST00000622629 U2AF1Q01081 240 aaKnown RBP eCLIP16.59■□□□□ 0.25
MSH6-215ENST00000622629 CDCA7LQ96GN5 454 aa16.58■□□□□ 0.24
MSH6-215ENST00000622629 ABCC5O15440 1437 aa16.58■□□□□ 0.24
MSH6-215ENST00000622629 PNISRQ8TF01 805 aaKnown RBP16.58■□□□□ 0.24
MSH6-215ENST00000622629 CRBNQ96SW2 442 aa16.57■□□□□ 0.24
MSH6-215ENST00000622629 C9orf84Q5VXU9 1444 aa16.57■□□□□ 0.24
MSH6-215ENST00000622629 AKNAQ7Z591 1439 aa16.57■□□□□ 0.24
MSH6-215ENST00000622629 AFAP1Q8N556 730 aa16.56■□□□□ 0.24
MSH6-215ENST00000622629 RTN4Q9NQC3 1192 aaKnown RBP16.56■□□□□ 0.24
MSH6-215ENST00000622629 RRP7AQ9Y3A4 280 aaKnown RBP16.55■□□□□ 0.24
MSH6-215ENST00000622629 ROCK1Q13464 1354 aa16.55■□□□□ 0.24
MSH6-215ENST00000622629 EIF4G3O43432 1585 aaKnown RBP16.55■□□□□ 0.24
MSH6-215ENST00000622629 APAF1O14727 1248 aa16.55■□□□□ 0.24
MSH6-215ENST00000622629 PDE4AP27815 886 aa16.55■□□□□ 0.24
MSH6-215ENST00000622629 CLUAP1Q96AJ1 413 aa16.54■□□□□ 0.24
MSH6-215ENST00000622629 EIF3AQ14152 1382 aaKnown RBP16.54■□□□□ 0.24
MSH6-215ENST00000622629 MYH16Q9H6N6 1097 aa16.53■□□□□ 0.24
MSH6-215ENST00000622629 PLEKHG5O94827 1062 aa16.52■□□□□ 0.24
MSH6-215ENST00000622629 WASHC2CQ9Y4E1 1318 aa16.52■□□□□ 0.23
MSH6-215ENST00000622629 BRD4O60885 1362 aaPredicted RBP16.51■□□□□ 0.23
MSH6-215ENST00000622629 ADAMTS8Q9UP79 889 aa16.51■□□□□ 0.23
MSH6-215ENST00000622629 BCL2L13Q9BXK5 485 aa16.49■□□□□ 0.23
MSH6-215ENST00000622629 NCOA1Q15788 1441 aa16.49■□□□□ 0.23
MSH6-215ENST00000622629 THOC2Q8NI27 1593 aaKnown RBP16.48■□□□□ 0.23
MSH6-215ENST00000622629 SLC4A3P48751 1232 aa16.47■□□□□ 0.23
MSH6-215ENST00000622629 CENPJQ9HC77 1338 aaPredicted RBP16.47■□□□□ 0.23
MSH6-215ENST00000622629 RPRD2Q5VT52 1461 aaKnown RBP16.47■□□□□ 0.23
MSH6-215ENST00000622629 SOX12O15370 315 aa16.46■□□□□ 0.23
MSH6-215ENST00000622629 SPRYD3Q8NCJ5 442 aa16.46■□□□□ 0.23
MSH6-215ENST00000622629 ARHGEF11O15085 1522 aa16.46■□□□□ 0.23
MSH6-215ENST00000622629 ARHGAP5Q13017 1502 aa16.46■□□□□ 0.23
MSH6-215ENST00000622629 CAMSAP2Q08AD1 1489 aa16.46■□□□□ 0.22
MSH6-215ENST00000622629 ADAMTS12P58397 1594 aa16.45■□□□□ 0.22
MSH6-215ENST00000622629 CFAP70Q5T0N1 1121 aa16.45■□□□□ 0.22
MSH6-215ENST00000622629 C14orf37Q86TY3 774 aa16.45■□□□□ 0.22
MSH6-215ENST00000622629 MS4A1P11836 297 aa16.44■□□□□ 0.22
MSH6-215ENST00000622629 TARBP1Q13395 1621 aaKnown RBP16.43■□□□□ 0.22
MSH6-215ENST00000622629 UGGT2Q9NYU1 1516 aa16.43■□□□□ 0.22
MSH6-215ENST00000622629 SLKQ9H2G2 1235 aaPredicted RBP16.43■□□□□ 0.22
MSH6-215ENST00000622629 COG6Q9Y2V7 657 aa16.43■□□□□ 0.22
MSH6-215ENST00000622629 ZBTB7CA1YPR0 619 aa16.42■□□□□ 0.22
MSH6-215ENST00000622629 CENPQQ7L2Z9 268 aaPredicted RBP16.41■□□□□ 0.22
MSH6-215ENST00000622629 HDGFL2Q7Z4V5 671 aaPredicted RBP16.41■□□□□ 0.22
MSH6-215ENST00000622629 ITPRIPQ8IWB1 547 aa16.41■□□□□ 0.22
MSH6-215ENST00000622629 ANP32BQ92688 251 aaKnown RBP16.41■□□□□ 0.22
MSH6-215ENST00000622629 E9PSI1 815 aa16.4■□□□□ 0.22
MSH6-215ENST00000622629 RAPGEF3O95398 923 aa16.4■□□□□ 0.22
MSH6-215ENST00000622629 SMC4Q9NTJ3 1288 aa16.4■□□□□ 0.22
MSH6-215ENST00000622629 SMG6Q86US8 1419 aaKnown RBP16.4■□□□□ 0.22
MSH6-215ENST00000622629 PPP2R1AP30153 589 aa16.4■□□□□ 0.22
MSH6-215ENST00000622629 TMEM132EQ6IEE7 984 aa16.4■□□□□ 0.22
MSH6-215ENST00000622629 ABCA5Q8WWZ7 1642 aa16.4■□□□□ 0.22
MSH6-215ENST00000622629 CFAP43Q8NDM7 1665 aa16.39■□□□□ 0.21
MSH6-215ENST00000622629 PNNQ9H307 717 aaKnown RBP16.39■□□□□ 0.21
MSH6-215ENST00000622629 PAK3O75914 559 aaPredicted RBP16.38■□□□□ 0.21
MSH6-215ENST00000622629 RWDD1Q9H446 243 aaPredicted RBP16.38■□□□□ 0.21
MSH6-215ENST00000622629 MSH5O43196 834 aa16.38■□□□□ 0.21
MSH6-215ENST00000622629 FAM161AQ3B820 660 aa16.36■□□□□ 0.21
MSH6-215ENST00000622629 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.36■□□□□ 0.21
MSH6-215ENST00000622629 TERF2IPQ9NYB0 399 aa16.36■□□□□ 0.21
MSH6-215ENST00000622629 GPATCH8Q9UKJ3 1502 aaKnown RBP16.35■□□□□ 0.21
MSH6-215ENST00000622629 CTTNBP2Q8WZ74 1663 aa16.35■□□□□ 0.21
MSH6-215ENST00000622629 PMFBP1Q8TBY8 1022 aa16.35■□□□□ 0.21
MSH6-215ENST00000622629 CGNL1Q0VF96 1302 aa16.35■□□□□ 0.21
MSH6-215ENST00000622629 MINK1Q8N4C8 1332 aaPredicted RBP16.34■□□□□ 0.21
MSH6-215ENST00000622629 NUP153P49790 1475 aaKnown RBP16.34■□□□□ 0.21
MSH6-215ENST00000622629 VGFO15240 615 aaPredicted RBP16.34■□□□□ 0.21
MSH6-215ENST00000622629 NUP160Q12769 1436 aa16.33■□□□□ 0.21
MSH6-215ENST00000622629 IPO8O15397 1037 aaKnown RBP16.33■□□□□ 0.21
MSH6-215ENST00000622629 PBRM1Q86U86 1689 aa16.33■□□□□ 0.2
MSH6-215ENST00000622629 STAC3Q96MF2 364 aa16.32■□□□□ 0.2
MSH6-215ENST00000622629 APBB1O00213 710 aa16.32■□□□□ 0.2
MSH6-215ENST00000622629 EVC2Q86UK5 1308 aa16.32■□□□□ 0.2
MSH6-215ENST00000622629 ERBINQ96RT1 1412 aa16.31■□□□□ 0.2
MSH6-215ENST00000622629 MFAP1P55081 439 aaKnown RBP16.31■□□□□ 0.2
MSH6-215ENST00000622629 PANK1Q8TE04 598 aa16.31■□□□□ 0.2
MSH6-215ENST00000622629 ELL2O00472 640 aaPredicted RBP16.31■□□□□ 0.2
MSH6-215ENST00000622629 HSP90AB1P08238 724 aaKnown RBP16.31■□□□□ 0.2
MSH6-215ENST00000622629 SLC12A5Q9H2X9 1139 aa16.31■□□□□ 0.2
MSH6-215ENST00000622629 SKAP1Q86WV1 359 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms