RNA–Protein interactions for RNA: ENST00000621856.1

SPAST-204, Transcript of spastin, humanhuman

TSL 1 (best) BASIC

Gene SPAST, Length 1,715 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-204ENST00000621856 DHX29Q7Z478 1369 aaKnown RBP30.71■■■□□ 2.51
SPAST-204ENST00000621856 MLH3Q9UHC1 1453 aa30.71■■■□□ 2.51
SPAST-204ENST00000621856 L3MBTL2Q969R5 705 aa30.7■■■□□ 2.5
SPAST-204ENST00000621856 TSPOAP1O95153 1857 aa30.69■■■□□ 2.5
SPAST-204ENST00000621856 DEPDC5O75140 1603 aa30.69■■■□□ 2.5
SPAST-204ENST00000621856 TEX14Q8IWB6 1497 aa30.68■■■□□ 2.5
SPAST-204ENST00000621856 RICTORQ6R327 1708 aa30.66■■■□□ 2.5
SPAST-204ENST00000621856 RAPGEF3O95398 923 aa30.64■■■□□ 2.5
SPAST-204ENST00000621856 A2MP01023 1474 aa30.64■■■□□ 2.5
SPAST-204ENST00000621856 KIF3BO15066 747 aa30.64■■■□□ 2.5
SPAST-204ENST00000621856 PPRC1Q5VV67 1664 aaKnown RBP30.62■■■□□ 2.49
SPAST-204ENST00000621856 KANK1Q14678 1352 aa30.62■■■□□ 2.49
SPAST-204ENST00000621856 ABCA6Q8N139 1617 aa30.61■■■□□ 2.49
SPAST-204ENST00000621856 KIF13AQ9H1H9 1805 aa30.6■■■□□ 2.49
SPAST-204ENST00000621856 PRDM15P57071 1507 aaPredicted RBP30.56■■■□□ 2.48
SPAST-204ENST00000621856 CCDC144AA2RUR9 1427 aa30.55■■■□□ 2.48
SPAST-204ENST00000621856 FRMPD1Q5SYB0 1578 aa30.55■■■□□ 2.48
SPAST-204ENST00000621856 VWDEQ8N2E2 1590 aa30.55■■■□□ 2.48
SPAST-204ENST00000621856 MROH1Q8NDA8 1641 aa30.55■■■□□ 2.48
SPAST-204ENST00000621856 TET3O43151 1660 aa30.54■■■□□ 2.48
SPAST-204ENST00000621856 E9PCH4 1651 aa30.53■■■□□ 2.48
SPAST-204ENST00000621856 RNF17Q9BXT8 1623 aaKnown RBP30.52■■■□□ 2.48
SPAST-204ENST00000621856 DIP2CQ9Y2E4 1556 aa30.52■■■□□ 2.48
SPAST-204ENST00000621856 PLA2R1Q13018 1463 aa30.51■■■□□ 2.48
SPAST-204ENST00000621856 ATP10AO60312 1499 aa30.48■■■□□ 2.47
SPAST-204ENST00000621856 BCORL1Q5H9F3 1711 aa30.48■■■□□ 2.47
SPAST-204ENST00000621856 ZMYM4Q5VZL5 1548 aa30.47■■■□□ 2.47
SPAST-204ENST00000621856 NBPF8Q3BBV2 869 aa30.46■■■□□ 2.47
SPAST-204ENST00000621856 SPHKAPQ2M3C7 1700 aa30.44■■■□□ 2.46
SPAST-204ENST00000621856 YEATS2Q9ULM3 1422 aa30.43■■■□□ 2.46
SPAST-204ENST00000621856 CEP152O94986 1710 aa30.42■■■□□ 2.46
SPAST-204ENST00000621856 HIRIP3Q9BW71 556 aaPredicted RBP30.42■■■□□ 2.46
SPAST-204ENST00000621856 TRPM2O94759 1503 aa30.39■■■□□ 2.46
SPAST-204ENST00000621856 LMTK2Q8IWU2 1503 aa30.39■■■□□ 2.46
SPAST-204ENST00000621856 GGT6Q6P531 493 aa30.39■■■□□ 2.45
SPAST-204ENST00000621856 EFCAB6Q5THR3 1501 aa30.38■■■□□ 2.45
SPAST-204ENST00000621856 ZNF326Q5BKZ1 582 aaKnown RBP30.38■■■□□ 2.45
SPAST-204ENST00000621856 PTPRTO14522 1441 aa30.36■■■□□ 2.45
SPAST-204ENST00000621856 DCAF11Q8TEB1 546 aa30.35■■■□□ 2.45
SPAST-204ENST00000621856 UHRF1BP1Q6BDS2 1440 aa30.35■■■□□ 2.45
SPAST-204ENST00000621856 EIF4G2P78344 907 aaKnown RBP eCLIP30.33■■■□□ 2.45
SPAST-204ENST00000621856 KDM2AQ9Y2K7 1162 aa30.33■■■□□ 2.45
SPAST-204ENST00000621856 HSPA5P11021 654 aaKnown RBP30.32■■■□□ 2.44
SPAST-204ENST00000621856 RGL3Q3MIN7 710 aa30.32■■■□□ 2.44
SPAST-204ENST00000621856 CLTCL1P53675 1640 aa30.3■■■□□ 2.44
SPAST-204ENST00000621856 ABCC3O15438 1527 aa30.29■■■□□ 2.44
SPAST-204ENST00000621856 WASHC2CQ9Y4E1 1318 aa30.27■■■□□ 2.44
SPAST-204ENST00000621856 RALGAPBQ86X10 1494 aa30.26■■■□□ 2.43
SPAST-204ENST00000621856 COL17A1Q9UMD9 1497 aaPredicted RBP30.25■■■□□ 2.43
SPAST-204ENST00000621856 CAMSAP1Q5T5Y3 1602 aa30.24■■■□□ 2.43
SPAST-204ENST00000621856 REREQ9P2R6 1566 aa30.23■■■□□ 2.43
SPAST-204ENST00000621856 MIER1Q8N108 512 aa30.23■■■□□ 2.43
SPAST-204ENST00000621856 ZC3H13Q5T200 1668 aaKnown RBP30.23■■■□□ 2.43
SPAST-204ENST00000621856 SPATA31E1Q6ZUB1 1445 aa30.23■■■□□ 2.43
SPAST-204ENST00000621856 NPATQ14207 1427 aa30.2■■■□□ 2.42
SPAST-204ENST00000621856 PRAG1Q86YV5 1406 aa30.2■■■□□ 2.42
SPAST-204ENST00000621856 DDX10Q13206 875 aaKnown RBP30.19■■■□□ 2.42
SPAST-204ENST00000621856 ARHGEF40Q8TER5 1519 aa30.18■■■□□ 2.42
SPAST-204ENST00000621856 CFAP65Q6ZU64 1925 aaKnown RBP30.18■■■□□ 2.42
SPAST-204ENST00000621856 KIF1BO60333 1816 aa30.17■■■□□ 2.42
SPAST-204ENST00000621856 UGGT1Q9NYU2 1555 aa30.16■■■□□ 2.42
SPAST-204ENST00000621856 AGLP35573 1532 aa30.16■■■□□ 2.42
SPAST-204ENST00000621856 TRPM1Q7Z4N2 1603 aa30.16■■■□□ 2.42
SPAST-204ENST00000621856 USP47Q96K76 1375 aa30.14■■■□□ 2.41
SPAST-204ENST00000621856 NEURL4Q96JN8 1562 aa30.13■■■□□ 2.41
SPAST-204ENST00000621856 CARD11Q9BXL7 1154 aa30.13■■■□□ 2.41
SPAST-204ENST00000621856 CNTLNQ9NXG0 1405 aa30.12■■■□□ 2.41
SPAST-204ENST00000621856 ROCK2O75116 1388 aaKnown RBP30.11■■■□□ 2.41
SPAST-204ENST00000621856 ARHGAP31Q2M1Z3 1444 aa30.09■■■□□ 2.41
SPAST-204ENST00000621856 TRHP20396 242 aaPredicted RBP30.09■■■□□ 2.41
SPAST-204ENST00000621856 SIGLEC1Q9BZZ2 1709 aa30.08■■■□□ 2.41
SPAST-204ENST00000621856 MROH2AA6NES4 1674 aa30.06■■■□□ 2.4
SPAST-204ENST00000621856 STAC3Q96MF2 364 aa30.05■■■□□ 2.4
SPAST-204ENST00000621856 NOS1P29475 1434 aa30.05■■■□□ 2.4
SPAST-204ENST00000621856 WASHC2AQ641Q2 1341 aa30.05■■■□□ 2.4
SPAST-204ENST00000621856 MADDQ8WXG6 1647 aa30.05■■■□□ 2.4
SPAST-204ENST00000621856 POLR1AO95602 1720 aaPredicted RBP30.04■■■□□ 2.4
SPAST-204ENST00000621856 DNAJC5Q9H3Z4 198 aa30.02■■■□□ 2.4
SPAST-204ENST00000621856 PPP6R1Q9UPN7 881 aa30.02■■■□□ 2.4
SPAST-204ENST00000621856 ADGRB3O60242 1522 aa30.01■■■□□ 2.4
SPAST-204ENST00000621856 LAMC1P11047 1609 aa30.01■■■□□ 2.39
SPAST-204ENST00000621856 SYNMO15061 1565 aa30.01■■■□□ 2.39
SPAST-204ENST00000621856 CHGAP10645 457 aaKnown RBP30■■■□□ 2.39
SPAST-204ENST00000621856 CCDC7Q96M83 1385 aa30■■■□□ 2.39
SPAST-204ENST00000621856 GPRASP1Q5JY77 1395 aa29.99■■■□□ 2.39
SPAST-204ENST00000621856 NBPF1Q3BBV0 1214 aa29.99■■■□□ 2.39
SPAST-204ENST00000621856 CLTCQ00610 1675 aaKnown RBP29.98■■■□□ 2.39
SPAST-204ENST00000621856 PREX1Q8TCU6 1659 aa29.98■■■□□ 2.39
SPAST-204ENST00000621856 IFT172Q9UG01 1749 aa29.98■■■□□ 2.39
SPAST-204ENST00000621856 C11orf95C9JLR9 678 aaPredicted RBP29.97■■■□□ 2.39
SPAST-204ENST00000621856 MLECQ14165 292 aa29.97■■■□□ 2.39
SPAST-204ENST00000621856 PIK3C2BO00750 1634 aa29.97■■■□□ 2.39
SPAST-204ENST00000621856 MYOM2P54296 1465 aa29.95■■■□□ 2.39
SPAST-204ENST00000621856 KIF7Q2M1P5 1343 aa29.92■■■□□ 2.38
SPAST-204ENST00000621856 ST20-MTHFSA0A0A6YYL1 179 aa29.91■■■□□ 2.38
SPAST-204ENST00000621856 KIAA1210Q9ULL0 1709 aa29.89■■■□□ 2.38
SPAST-204ENST00000621856 ARID4BQ4LE39 1312 aaPredicted RBP29.89■■■□□ 2.37
SPAST-204ENST00000621856 PPLO60437 1756 aa29.89■■■□□ 2.37
SPAST-204ENST00000621856 SLC52A1Q9NWF4 448 aa29.88■■■□□ 2.37
SPAST-204ENST00000621856 ERVK-7P63135 1459 aa29.88■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms