RNA–Protein interactions for RNA: ENST00000621271.4

CLTCL1-211, Transcript of clathrin heavy chain like 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLTCL1, Length 5,313 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-211ENST00000621271 HSPA5P11021 654 aaKnown RBP12.38□□□□□ -0.43
CLTCL1-211ENST00000621271 LMOD3Q0VAK6 560 aa12.38□□□□□ -0.43
CLTCL1-211ENST00000621271 NRDCO43847 1150 aa12.37□□□□□ -0.43
CLTCL1-211ENST00000621271 AQRO60306 1485 aaKnown RBP eCLIP12.37□□□□□ -0.433e-7■■■■■ 30.5
CLTCL1-211ENST00000621271 C1orf141Q5JVX7 400 aa12.36□□□□□ -0.43
CLTCL1-211ENST00000621271 RTN4Q9NQC3 1192 aaKnown RBP12.36□□□□□ -0.43
CLTCL1-211ENST00000621271 RAPGEF2Q9Y4G8 1499 aa12.36□□□□□ -0.43
CLTCL1-211ENST00000621271 VPS8Q8N3P4 1428 aa12.36□□□□□ -0.43
CLTCL1-211ENST00000621271 GPATCH3Q96I76 525 aa12.36□□□□□ -0.43
CLTCL1-211ENST00000621271 ATF3P18847 181 aa12.35□□□□□ -0.43
CLTCL1-211ENST00000621271 KANK4Q5T7N3 995 aaPredicted RBP12.35□□□□□ -0.43
CLTCL1-211ENST00000621271 FHOD3Q2V2M9 1422 aa12.34□□□□□ -0.43
CLTCL1-211ENST00000621271 PSME1Q06323 249 aa12.34□□□□□ -0.43
CLTCL1-211ENST00000621271 KLHL34Q8N239 644 aa12.34□□□□□ -0.43
CLTCL1-211ENST00000621271 ITPRIPQ8IWB1 547 aa12.34□□□□□ -0.43
CLTCL1-211ENST00000621271 COG3Q96JB2 828 aa12.34□□□□□ -0.43
CLTCL1-211ENST00000621271 RAD54L2Q9Y4B4 1467 aa12.34□□□□□ -0.43
CLTCL1-211ENST00000621271 UACAQ9BZF9 1416 aa12.33□□□□□ -0.44
CLTCL1-211ENST00000621271 SYTL4Q96C24 671 aaPredicted RBP12.33□□□□□ -0.44
CLTCL1-211ENST00000621271 DNMBPQ6XZF7 1577 aa12.33□□□□□ -0.44
CLTCL1-211ENST00000621271 RALBP1Q15311 655 aa12.33□□□□□ -0.44
CLTCL1-211ENST00000621271 SLC4A10Q6U841 1118 aa12.33□□□□□ -0.44
CLTCL1-211ENST00000621271 HMMRO75330 724 aa12.32□□□□□ -0.44
CLTCL1-211ENST00000621271 DNTTIP2Q5QJE6 756 aaKnown RBP12.32□□□□□ -0.44
CLTCL1-211ENST00000621271 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.32□□□□□ -0.44
CLTCL1-211ENST00000621271 TTC5Q8N0Z6 440 aa12.32□□□□□ -0.44
CLTCL1-211ENST00000621271 HSCBQ8IWL3 235 aa12.32□□□□□ -0.44
CLTCL1-211ENST00000621271 TEFQ10587 303 aa12.31□□□□□ -0.44
CLTCL1-211ENST00000621271 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.3□□□□□ -0.44
CLTCL1-211ENST00000621271 TOMM22Q9NS69 142 aa12.29□□□□□ -0.44
CLTCL1-211ENST00000621271 SMC4Q9NTJ3 1288 aa12.29□□□□□ -0.44
CLTCL1-211ENST00000621271 EVC2Q86UK5 1308 aa12.29□□□□□ -0.44
CLTCL1-211ENST00000621271 CCDC144AA2RUR9 1427 aa12.29□□□□□ -0.44
CLTCL1-211ENST00000621271 POLA1P09884 1462 aaPredicted RBP12.28□□□□□ -0.44
CLTCL1-211ENST00000621271 MINK1Q8N4C8 1332 aaPredicted RBP12.28□□□□□ -0.44
CLTCL1-211ENST00000621271 RWDD1Q9H446 243 aaPredicted RBP12.28□□□□□ -0.44
CLTCL1-211ENST00000621271 NAP1L5Q96NT1 182 aaPredicted RBP12.26□□□□□ -0.45
CLTCL1-211ENST00000621271 VPS53Q5VIR6 699 aa12.25□□□□□ -0.45
CLTCL1-211ENST00000621271 TRIM34Q9BYJ4 488 aa12.25□□□□□ -0.45
CLTCL1-211ENST00000621271 TRIM6-TRIM34B2RNG4 842 aa12.25□□□□□ -0.45
CLTCL1-211ENST00000621271 CHAF1AQ13111 956 aaPredicted RBP12.25□□□□□ -0.45
CLTCL1-211ENST00000621271 NOL10Q9BSC4 688 aaKnown RBP12.25□□□□□ -0.45
CLTCL1-211ENST00000621271 CCDC34Q96HJ3 373 aa12.25□□□□□ -0.45
CLTCL1-211ENST00000621271 RAB3GAP2Q9H2M9 1393 aa12.24□□□□□ -0.45
CLTCL1-211ENST00000621271 HTATSF1O43719 755 aaKnown RBP12.24□□□□□ -0.45
CLTCL1-211ENST00000621271 SF3B2Q13435 895 aaKnown RBP12.24□□□□□ -0.45
CLTCL1-211ENST00000621271 RASSF8Q8NHQ8 419 aa12.24□□□□□ -0.45
CLTCL1-211ENST00000621271 L3MBTL2Q969R5 705 aa12.24□□□□□ -0.45
CLTCL1-211ENST00000621271 MARCH6O60337 910 aa12.24□□□□□ -0.45
CLTCL1-211ENST00000621271 NEXNQ0ZGT2 675 aa12.24□□□□□ -0.45
CLTCL1-211ENST00000621271 CTDP1Q9Y5B0 961 aaPredicted RBP12.24□□□□□ -0.45
CLTCL1-211ENST00000621271 HSP90B1P14625 803 aaKnown RBP12.23□□□□□ -0.45
CLTCL1-211ENST00000621271 L1TD1Q5T7N2 865 aaKnown RBP12.23□□□□□ -0.45
CLTCL1-211ENST00000621271 CGNL1Q0VF96 1302 aa12.23□□□□□ -0.45
CLTCL1-211ENST00000621271 KIAA2012Q0VF49 1180 aa12.23□□□□□ -0.45
CLTCL1-211ENST00000621271 NGEFQ8N5V2 710 aa12.23□□□□□ -0.45
CLTCL1-211ENST00000621271 RAPGEF4Q8WZA2 1011 aa12.22□□□□□ -0.45
CLTCL1-211ENST00000621271 AMOTL1Q8IY63 956 aa12.22□□□□□ -0.45
CLTCL1-211ENST00000621271 SNAPC4Q5SXM2 1469 aa12.22□□□□□ -0.45
CLTCL1-211ENST00000621271 URB2Q14146 1524 aaKnown RBP12.21□□□□□ -0.45
CLTCL1-211ENST00000621271 CCDC146Q8IYE0 955 aa12.21□□□□□ -0.45
CLTCL1-211ENST00000621271 MAGI1Q96QZ7 1491 aaPredicted RBP12.21□□□□□ -0.45
CLTCL1-211ENST00000621271 CWC22Q9HCG8 908 aaKnown RBP12.2□□□□□ -0.46
CLTCL1-211ENST00000621271 FBXW7Q969H0 707 aa12.2□□□□□ -0.46
CLTCL1-211ENST00000621271 DNAJC5Q9H3Z4 198 aa12.2□□□□□ -0.46
CLTCL1-211ENST00000621271 PROSER2Q86WR7 435 aaPredicted RBP12.19□□□□□ -0.46
CLTCL1-211ENST00000621271 NLRP13Q86W25 1043 aa12.19□□□□□ -0.46
CLTCL1-211ENST00000621271 VPS37DQ86XT2 251 aa12.19□□□□□ -0.46
CLTCL1-211ENST00000621271 PRM3Q9NNZ6 103 aa12.19□□□□□ -0.46
CLTCL1-211ENST00000621271 NLRP2Q9NX02 1062 aa12.19□□□□□ -0.46
CLTCL1-211ENST00000621271 RCAN3Q9UKA8 241 aa12.19□□□□□ -0.46
CLTCL1-211ENST00000621271 WASHC2AQ641Q2 1341 aa12.19□□□□□ -0.46
CLTCL1-211ENST00000621271 DRC7Q8IY82 874 aa12.19□□□□□ -0.46
CLTCL1-211ENST00000621271 PMFBP1Q8TBY8 1022 aa12.18□□□□□ -0.46
CLTCL1-211ENST00000621271 IGF1RP08069 1367 aa12.18□□□□□ -0.46
CLTCL1-211ENST00000621271 RAD21O60216 631 aa12.18□□□□□ -0.46
CLTCL1-211ENST00000621271 EIF2S2P20042 333 aaKnown RBP12.18□□□□□ -0.46
CLTCL1-211ENST00000621271 CLUAP1Q96AJ1 413 aa12.18□□□□□ -0.46
CLTCL1-211ENST00000621271 IPO9Q96P70 1041 aaKnown RBP12.18□□□□□ -0.46
CLTCL1-211ENST00000621271 TCERG1O14776 1098 aaKnown RBP12.17□□□□□ -0.46
CLTCL1-211ENST00000621271 SYNJ2O15056 1496 aa12.17□□□□□ -0.46
CLTCL1-211ENST00000621271 CENPJQ9HC77 1338 aaPredicted RBP12.17□□□□□ -0.46
CLTCL1-211ENST00000621271 LRRFIP1Q32MZ4 808 aaKnown RBP12.17□□□□□ -0.46
CLTCL1-211ENST00000621271 ELL2O00472 640 aaPredicted RBP12.17□□□□□ -0.46
CLTCL1-211ENST00000621271 RBM33Q96EV2 1170 aaKnown RBP12.17□□□□□ -0.46
CLTCL1-211ENST00000621271 TCEAL9Q9UHQ7 104 aa12.17□□□□□ -0.46
CLTCL1-211ENST00000621271 DDX58O95786 925 aaKnown RBP12.16□□□□□ -0.46
CLTCL1-211ENST00000621271 SPRYD3Q8NCJ5 442 aa12.16□□□□□ -0.46
CLTCL1-211ENST00000621271 C9orf78Q9NZ63 289 aaPredicted RBP12.16□□□□□ -0.46
CLTCL1-211ENST00000621271 ST20-MTHFSA0A0A6YYL1 179 aa12.16□□□□□ -0.46
CLTCL1-211ENST00000621271 TXNDC2Q86VQ3 553 aa12.15□□□□□ -0.46
CLTCL1-211ENST00000621271 PRG4Q92954 1404 aaPredicted RBP12.15□□□□□ -0.46
CLTCL1-211ENST00000621271 RRP7AQ9Y3A4 280 aaKnown RBP12.15□□□□□ -0.46
CLTCL1-211ENST00000621271 KIF3AQ9Y496 699 aa12.15□□□□□ -0.46
CLTCL1-211ENST00000621271 GPRASP1Q5JY77 1395 aa12.15□□□□□ -0.46
CLTCL1-211ENST00000621271 PANK3Q9H999 370 aa12.15□□□□□ -0.46
CLTCL1-211ENST00000621271 DHX57Q6P158 1386 aaKnown RBP12.14□□□□□ -0.47
CLTCL1-211ENST00000621271 USP35Q9P2H5 1018 aa12.14□□□□□ -0.47
CLTCL1-211ENST00000621271 ABCA10Q8WWZ4 1543 aa12.14□□□□□ -0.47
CLTCL1-211ENST00000621271 PHLDB1Q86UU1 1377 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms