RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 KCNV2Q8TDN2 545 aa13.68□□□□□ -0.22
VPS29-212ENST00000621131 ARHGEF1Q92888 912 aaKnown RBP13.68□□□□□ -0.22
VPS29-212ENST00000621131 RNF166Q96A37 237 aaPredicted RBP13.68□□□□□ -0.22
VPS29-212ENST00000621131 HAP1P54257 671 aaPredicted RBP13.67□□□□□ -0.22
VPS29-212ENST00000621131 ZBED2Q9BTP6 218 aa13.67□□□□□ -0.22
VPS29-212ENST00000621131 C6orf132Q5T0Z8 1188 aa13.66□□□□□ -0.22
VPS29-212ENST00000621131 COL9A1P20849 921 aa13.65□□□□□ -0.22
VPS29-212ENST00000621131 PPP1R3GB7ZBB8 358 aa13.64□□□□□ -0.23
VPS29-212ENST00000621131 RBM33Q96EV2 1170 aaKnown RBP13.64□□□□□ -0.23
VPS29-212ENST00000621131 NBR1Q14596 966 aa13.63□□□□□ -0.23
VPS29-212ENST00000621131 GRXCR2A6NFK2 248 aa13.62□□□□□ -0.23
VPS29-212ENST00000621131 BHMG1C9JSJ3 638 aaPredicted RBP13.61□□□□□ -0.23
VPS29-212ENST00000621131 PRIM1P49642 420 aaKnown RBP13.61□□□□□ -0.23
VPS29-212ENST00000621131 EN1Q05925 392 aaPredicted RBP13.61□□□□□ -0.23
VPS29-212ENST00000621131 OSBPP22059 807 aa13.59□□□□□ -0.23
VPS29-212ENST00000621131 KDM2AQ9Y2K7 1162 aa13.59□□□□□ -0.23
VPS29-212ENST00000621131 TSR1Q2NL82 804 aaKnown RBP13.57□□□□□ -0.24
VPS29-212ENST00000621131 P3H3Q8IVL6 736 aa13.57□□□□□ -0.24
VPS29-212ENST00000621131 PROX2Q3B8N5 592 aa13.56□□□□□ -0.24
VPS29-212ENST00000621131 MAP3K7O43318 606 aa13.55□□□□□ -0.24
VPS29-212ENST00000621131 STAC3Q96MF2 364 aa13.55□□□□□ -0.24
VPS29-212ENST00000621131 ONECUT3O60422 494 aaPredicted RBP13.52□□□□□ -0.25
VPS29-212ENST00000621131 MLLT3P42568 568 aaPredicted RBP13.52□□□□□ -0.25
VPS29-212ENST00000621131 RABGEF1Q9UJ41 708 aa13.52□□□□□ -0.25
VPS29-212ENST00000621131 VSIG10Q8N0Z9 540 aa13.49□□□□□ -0.25
VPS29-212ENST00000621131 KIAA1468Q9P260 1216 aa13.48□□□□□ -0.25
VPS29-212ENST00000621131 TRIM6-TRIM34B2RNG4 842 aa13.47□□□□□ -0.25
VPS29-212ENST00000621131 MRPL50Q8N5N7 158 aaKnown RBP13.47□□□□□ -0.25
VPS29-212ENST00000621131 KCTD12Q96CX2 325 aaKnown RBP13.46□□□□□ -0.25
VPS29-212ENST00000621131 NBPF3Q9H094 633 aa13.46□□□□□ -0.25
VPS29-212ENST00000621131 SEMA3EO15041 775 aa13.45□□□□□ -0.26
VPS29-212ENST00000621131 CDHR5Q9HBB8 845 aa13.45□□□□□ -0.26
VPS29-212ENST00000621131 CERKQ8TCT0 537 aa13.44□□□□□ -0.26
VPS29-212ENST00000621131 TSKSQ9UJT2 592 aa13.44□□□□□ -0.26
VPS29-212ENST00000621131 HCSTQ9UBK5 93 aa13.43□□□□□ -0.26
VPS29-212ENST00000621131 PRSS12P56730 875 aa13.42□□□□□ -0.26
VPS29-212ENST00000621131 NPDC1Q9NQX5 325 aaPredicted RBP13.42□□□□□ -0.26
VPS29-212ENST00000621131 CDCA7LQ96GN5 454 aa13.41□□□□□ -0.26
VPS29-212ENST00000621131 GOLGA8CPA6NN73 597 aa13.4□□□□□ -0.26
VPS29-212ENST00000621131 LAPTM4BQ86VI4 370 aa13.4□□□□□ -0.26
VPS29-212ENST00000621131 FAM198AQ9UFP1 575 aa13.4□□□□□ -0.26
VPS29-212ENST00000621131 WNT2BQ93097 391 aa13.39□□□□□ -0.27
VPS29-212ENST00000621131 PACS2Q86VP3 889 aa13.38□□□□□ -0.27
VPS29-212ENST00000621131 THSD4Q6ZMP0 1018 aa13.37□□□□□ -0.27
VPS29-212ENST00000621131 TESPA1A2RU30 521 aaPredicted RBP13.36□□□□□ -0.27
VPS29-212ENST00000621131 SEPT9Q9UHD8 586 aaPredicted RBP13.36□□□□□ -0.27
VPS29-212ENST00000621131 C3orf80F5H4A9 247 aa13.34□□□□□ -0.27
VPS29-212ENST00000621131 TTC13Q8NBP0 860 aa13.34□□□□□ -0.27
VPS29-212ENST00000621131 ZFRQ96KR1 1074 aaKnown RBP13.34□□□□□ -0.27
VPS29-212ENST00000621131 RBM27Q9P2N5 1060 aaKnown RBP13.34□□□□□ -0.27
VPS29-212ENST00000621131 PTPN5P54829 565 aa13.32□□□□□ -0.28
VPS29-212ENST00000621131 FAM98CQ17RN3 349 aaKnown RBP13.32□□□□□ -0.28
VPS29-212ENST00000621131 PTGDRQ13258 359 aa13.3□□□□□ -0.28
VPS29-212ENST00000621131 ANKK1Q8NFD2 765 aa13.3□□□□□ -0.28
VPS29-212ENST00000621131 TATDN2Q93075 761 aa13.3□□□□□ -0.28
VPS29-212ENST00000621131 SMAPO00193 183 aa13.29□□□□□ -0.28
VPS29-212ENST00000621131 PADI6Q6TGC4 694 aa13.29□□□□□ -0.28
VPS29-212ENST00000621131 SOWAHBA6NEL2 793 aa13.28□□□□□ -0.28
VPS29-212ENST00000621131 NUTM2FA1L443 756 aa13.27□□□□□ -0.29
VPS29-212ENST00000621131 SMYD5Q6GMV2 418 aa13.27□□□□□ -0.29
VPS29-212ENST00000621131 PNMA3Q9UL41 463 aa13.27□□□□□ -0.29
VPS29-212ENST00000621131 BCAMP50895 628 aa13.26□□□□□ -0.29
VPS29-212ENST00000621131 NUDT18Q6ZVK8 323 aa13.26□□□□□ -0.29
VPS29-212ENST00000621131 NBPF26B4DH59 902 aa13.25□□□□□ -0.29
VPS29-212ENST00000621131 RBM26Q5T8P6 1007 aaKnown RBP13.25□□□□□ -0.29
VPS29-212ENST00000621131 FCHSD2O94868 740 aa13.2□□□□□ -0.3
VPS29-212ENST00000621131 EYA1Q99502 592 aa13.2□□□□□ -0.3
VPS29-212ENST00000621131 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.2□□□□□ -0.3
VPS29-212ENST00000621131 PLA2G2EQ9NZK7 142 aa13.2□□□□□ -0.3
VPS29-212ENST00000621131 LRCH3Q96II8 777 aa13.19□□□□□ -0.3
VPS29-212ENST00000621131 SAMD7Q7Z3H4 446 aa13.18□□□□□ -0.3
VPS29-212ENST00000621131 WBP1LQ9NX94 342 aa13.18□□□□□ -0.3
VPS29-212ENST00000621131 TSR3Q9UJK0 312 aaKnown RBP13.16□□□□□ -0.3
VPS29-212ENST00000621131 HPS5Q9UPZ3 1129 aa13.15□□□□□ -0.3
VPS29-212ENST00000621131 GPR37O15354 613 aa13.14□□□□□ -0.31
VPS29-212ENST00000621131 ADGRG1Q9Y653 693 aa13.14□□□□□ -0.31
VPS29-212ENST00000621131 HIC1Q14526 733 aa13.13□□□□□ -0.31
VPS29-212ENST00000621131 NYAP1Q6ZVC0 841 aa13.12□□□□□ -0.31
VPS29-212ENST00000621131 HDGFP51858 240 aaKnown RBP13.1□□□□□ -0.31
VPS29-212ENST00000621131 PPP4CP60510 307 aa13.1□□□□□ -0.31
VPS29-212ENST00000621131 FAM161AQ3B820 660 aa13.1□□□□□ -0.31
VPS29-212ENST00000621131 FECHP22830 423 aa13.09□□□□□ -0.31
VPS29-212ENST00000621131 SWT1Q5T5J6 900 aaKnown RBP13.09□□□□□ -0.31
VPS29-212ENST00000621131 RBM46Q8TBY0 533 aaKnown RBP13.09□□□□□ -0.31
VPS29-212ENST00000621131 GNPATO15228 680 aa13.08□□□□□ -0.32
VPS29-212ENST00000621131 IFFO2Q5TF58 517 aa13.07□□□□□ -0.32
VPS29-212ENST00000621131 GPIHBP1Q8IV16 184 aa13.05□□□□□ -0.32
VPS29-212ENST00000621131 DNAJB2P25686 324 aa13.04□□□□□ -0.32
VPS29-212ENST00000621131 RCCD1A6NED2 376 aa13.03□□□□□ -0.32
VPS29-212ENST00000621131 ITGBL1O95965 494 aaPredicted RBP13.03□□□□□ -0.32
VPS29-212ENST00000621131 OATP04181 439 aa13.03□□□□□ -0.32
VPS29-212ENST00000621131 PXYLP1Q8TE99 480 aa13.03□□□□□ -0.32
VPS29-212ENST00000621131 TULP1O00294 542 aaPredicted RBP13.02□□□□□ -0.33
VPS29-212ENST00000621131 TMEM134Q9H6X4 195 aa13.02□□□□□ -0.33
VPS29-212ENST00000621131 SLF2Q8IX21 1173 aa13.01□□□□□ -0.33
VPS29-212ENST00000621131 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13□□□□□ -0.33
VPS29-212ENST00000621131 RNF40O75150 1001 aa12.99□□□□□ -0.33
VPS29-212ENST00000621131 METTL3Q86U44 580 aaKnown RBP12.99□□□□□ -0.33
VPS29-212ENST00000621131 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.98□□□□□ -0.33
VPS29-212ENST00000621131 APLP1P51693 650 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms