RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 GZF1Q9H116 711 aaPredicted RBP17.15■□□□□ 0.34
MSH6-214ENST00000616033 UGGT2Q9NYU1 1516 aa17.14■□□□□ 0.33
MSH6-214ENST00000616033 NUP155O75694 1391 aa17.14■□□□□ 0.33
MSH6-214ENST00000616033 POGKQ9P215 609 aa17.14■□□□□ 0.33
MSH6-214ENST00000616033 ROCK2O75116 1388 aaKnown RBP17.14■□□□□ 0.33
MSH6-214ENST00000616033 BCORL1Q5H9F3 1711 aa17.14■□□□□ 0.33
MSH6-214ENST00000616033 PANK3Q9H999 370 aa17.14■□□□□ 0.33
MSH6-214ENST00000616033 ADAMTS8Q9UP79 889 aa17.13■□□□□ 0.33
MSH6-214ENST00000616033 LRRIQ1Q96JM4 1722 aa17.13■□□□□ 0.33
MSH6-214ENST00000616033 PBRM1Q86U86 1689 aa17.13■□□□□ 0.33
MSH6-214ENST00000616033 ADAMTS12P58397 1594 aa17.13■□□□□ 0.33
MSH6-214ENST00000616033 GRIN2AQ12879 1464 aa17.13■□□□□ 0.33
MSH6-214ENST00000616033 BRD4O60885 1362 aaPredicted RBP17.12■□□□□ 0.33
MSH6-214ENST00000616033 FAM161AQ3B820 660 aa17.12■□□□□ 0.33
MSH6-214ENST00000616033 HECW1Q76N89 1606 aa17.12■□□□□ 0.33
MSH6-214ENST00000616033 DAPK1P53355 1430 aa17.12■□□□□ 0.33
MSH6-214ENST00000616033 WDR43Q15061 677 aaKnown RBP eCLIP17.12■□□□□ 0.332e-9■□□□□ 9.3
MSH6-214ENST00000616033 PLB1Q6P1J6 1458 aa17.11■□□□□ 0.33
MSH6-214ENST00000616033 WDR62O43379 1518 aa17.11■□□□□ 0.33
MSH6-214ENST00000616033 EPRSP07814 1512 aaKnown RBP17.11■□□□□ 0.33
MSH6-214ENST00000616033 PRG4Q92954 1404 aaPredicted RBP17.11■□□□□ 0.33
MSH6-214ENST00000616033 CANXP27824 592 aaKnown RBP17.11■□□□□ 0.33
MSH6-214ENST00000616033 ABCC5O15440 1437 aa17.1■□□□□ 0.33
MSH6-214ENST00000616033 PLEKHD1A6NEE1 506 aa17.1■□□□□ 0.33
MSH6-214ENST00000616033 EIF4G3O43432 1585 aaKnown RBP17.1■□□□□ 0.33
MSH6-214ENST00000616033 PDE3BQ13370 1112 aa17.09■□□□□ 0.33
MSH6-214ENST00000616033 MIA2Q96PC5 1412 aa17.09■□□□□ 0.33
MSH6-214ENST00000616033 KIAA0586Q9BVV6 1533 aa17.09■□□□□ 0.33
MSH6-214ENST00000616033 NEUROD2Q15784 382 aa17.08■□□□□ 0.33
MSH6-214ENST00000616033 SAMD9Q5K651 1589 aa17.07■□□□□ 0.32
MSH6-214ENST00000616033 LRPPRCP42704 1394 aaKnown RBP17.07■□□□□ 0.32
MSH6-214ENST00000616033 C8orf34Q49A92 452 aa17.07■□□□□ 0.32
MSH6-214ENST00000616033 THOC2Q8NI27 1593 aaKnown RBP17.06■□□□□ 0.32
MSH6-214ENST00000616033 ARID3AQ99856 593 aa17.06■□□□□ 0.32
MSH6-214ENST00000616033 BCAR3O75815 825 aa17.05■□□□□ 0.32
MSH6-214ENST00000616033 CENPQQ7L2Z9 268 aaPredicted RBP17.05■□□□□ 0.32
MSH6-214ENST00000616033 DISP1Q96F81 1524 aa17.04■□□□□ 0.32
MSH6-214ENST00000616033 SEC24BO95487 1268 aa17.03■□□□□ 0.32
MSH6-214ENST00000616033 RSPH6AQ9H0K4 717 aa17.03■□□□□ 0.32
MSH6-214ENST00000616033 HNRNPMP52272 730 aaKnown RBP eCLIP17.03■□□□□ 0.32
MSH6-214ENST00000616033 GCC2Q8IWJ2 1684 aa17.02■□□□□ 0.32
MSH6-214ENST00000616033 KIAA1107Q9UPP5 1409 aa17.02■□□□□ 0.32
MSH6-214ENST00000616033 TSPY4P0CV99 314 aa17.02■□□□□ 0.32
MSH6-214ENST00000616033 TSPY10P0CW01 314 aa17.02■□□□□ 0.32
MSH6-214ENST00000616033 SYNJ2O15056 1496 aa17.01■□□□□ 0.31
MSH6-214ENST00000616033 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.01■□□□□ 0.31
MSH6-214ENST00000616033 CARMIL2Q6F5E8 1435 aa17.01■□□□□ 0.31
MSH6-214ENST00000616033 TCOF1Q13428 1488 aaKnown RBP17■□□□□ 0.31
MSH6-214ENST00000616033 HSP90AA2PQ14568 343 aaPredicted RBP17■□□□□ 0.31
MSH6-214ENST00000616033 COG6Q9Y2V7 657 aa17■□□□□ 0.31
MSH6-214ENST00000616033 GOLGA2Q08379 1002 aa16.99■□□□□ 0.31
MSH6-214ENST00000616033 PZPP20742 1482 aa16.99■□□□□ 0.31
MSH6-214ENST00000616033 NUP153P49790 1475 aaKnown RBP16.99■□□□□ 0.31
MSH6-214ENST00000616033 KNSTRNQ9Y448 316 aa16.99■□□□□ 0.31
MSH6-214ENST00000616033 BCL2L13Q9BXK5 485 aa16.98■□□□□ 0.31
MSH6-214ENST00000616033 RRAGDQ9NQL2 400 aaPredicted RBP16.98■□□□□ 0.31
MSH6-214ENST00000616033 APAF1O14727 1248 aa16.98■□□□□ 0.31
MSH6-214ENST00000616033 TNNT2P45379 298 aaPredicted RBP16.98■□□□□ 0.31
MSH6-214ENST00000616033 PANK1Q8TE04 598 aa16.98■□□□□ 0.31
MSH6-214ENST00000616033 IGHDP01880 384 aa16.98■□□□□ 0.31
MSH6-214ENST00000616033 CLUAP1Q96AJ1 413 aa16.97■□□□□ 0.31
MSH6-214ENST00000616033 PER1O15534 1290 aaPredicted RBP16.96■□□□□ 0.31
MSH6-214ENST00000616033 CEP170Q5SW79 1584 aa16.96■□□□□ 0.31
MSH6-214ENST00000616033 SPINK5Q9NQ38 1064 aaPredicted RBP16.96■□□□□ 0.31
MSH6-214ENST00000616033 KDM2BQ8NHM5 1336 aa16.96■□□□□ 0.31
MSH6-214ENST00000616033 DUSP27Q5VZP5 1158 aa16.96■□□□□ 0.31
MSH6-214ENST00000616033 PTPRGP23470 1445 aa16.95■□□□□ 0.3
MSH6-214ENST00000616033 MAGI1Q96QZ7 1491 aaPredicted RBP16.95■□□□□ 0.3
MSH6-214ENST00000616033 ANKRD50Q9ULJ7 1429 aa16.95■□□□□ 0.3
MSH6-214ENST00000616033 FAM43AQ8N2R8 423 aa16.95■□□□□ 0.3
MSH6-214ENST00000616033 ROCK1Q13464 1354 aa16.94■□□□□ 0.3
MSH6-214ENST00000616033 ANKRD30AQ9BXX3 1397 aa16.94■□□□□ 0.3
MSH6-214ENST00000616033 PLEKHH1Q9ULM0 1364 aa16.94■□□□□ 0.3
MSH6-214ENST00000616033 RRP7AQ9Y3A4 280 aaKnown RBP16.94■□□□□ 0.3
MSH6-214ENST00000616033 BECN1Q14457 450 aa16.93■□□□□ 0.3
MSH6-214ENST00000616033 PANK2Q9BZ23 570 aa16.93■□□□□ 0.3
MSH6-214ENST00000616033 KIAA0556O60303 1618 aa16.93■□□□□ 0.3
MSH6-214ENST00000616033 DISP3Q9P2K9 1392 aa16.93■□□□□ 0.3
MSH6-214ENST00000616033 TMF1P82094 1093 aa16.92■□□□□ 0.3
MSH6-214ENST00000616033 KDM5CP41229 1560 aa16.92■□□□□ 0.3
MSH6-214ENST00000616033 ARHGEF11O15085 1522 aa16.91■□□□□ 0.3
MSH6-214ENST00000616033 PARD3Q8TEW0 1356 aa16.91■□□□□ 0.3
MSH6-214ENST00000616033 PPP2R1AP30153 589 aa16.89■□□□□ 0.29
MSH6-214ENST00000616033 UPF2Q9HAU5 1272 aaKnown RBP16.89■□□□□ 0.29
MSH6-214ENST00000616033 HSP90AA1P07900 732 aaKnown RBP16.89■□□□□ 0.29
MSH6-214ENST00000616033 DMRT2Q9Y5R5 561 aa16.89■□□□□ 0.29
MSH6-214ENST00000616033 SENP3Q9H4L4 574 aaPredicted RBP16.89■□□□□ 0.29
MSH6-214ENST00000616033 PNNQ9H307 717 aaKnown RBP16.88■□□□□ 0.29
MSH6-214ENST00000616033 TNNQ9UQP3 1299 aa16.87■□□□□ 0.29
MSH6-214ENST00000616033 TROQ12816 1431 aaPredicted RBP16.86■□□□□ 0.29
MSH6-214ENST00000616033 CAMSAP2Q08AD1 1489 aa16.86■□□□□ 0.29
MSH6-214ENST00000616033 AMER1Q5JTC6 1135 aaPredicted RBP16.86■□□□□ 0.29
MSH6-214ENST00000616033 GOLGA6L3A6NEY3 463 aa16.85■□□□□ 0.29
MSH6-214ENST00000616033 RALGAPBQ86X10 1494 aa16.85■□□□□ 0.29
MSH6-214ENST00000616033 MFAP1P55081 439 aaKnown RBP16.85■□□□□ 0.29
MSH6-214ENST00000616033 POLR1AO95602 1720 aaPredicted RBP16.85■□□□□ 0.29
MSH6-214ENST00000616033 FOXD4L1Q9NU39 408 aa16.84■□□□□ 0.29
MSH6-214ENST00000616033 RAPGEF6Q8TEU7 1601 aa16.84■□□□□ 0.29
MSH6-214ENST00000616033 MBD5Q9P267 1494 aa16.84■□□□□ 0.29
MSH6-214ENST00000616033 NUP160Q12769 1436 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms