RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 GGT6Q6P531 493 aa11.31□□□□□ -0.6
LIG4-204ENST00000611712 BRD4O60885 1362 aaPredicted RBP11.31□□□□□ -0.6
LIG4-204ENST00000611712 SYNJ2O15056 1496 aa11.31□□□□□ -0.6
LIG4-204ENST00000611712 TCOF1Q13428 1488 aaKnown RBP11.31□□□□□ -0.6
LIG4-204ENST00000611712 DEKP35659 375 aaKnown RBP11.31□□□□□ -0.6
LIG4-204ENST00000611712 CCDC146Q8IYE0 955 aa11.3□□□□□ -0.6
LIG4-204ENST00000611712 GOLGA2Q08379 1002 aa11.3□□□□□ -0.6
LIG4-204ENST00000611712 MORC1Q86VD1 984 aa11.29□□□□□ -0.6
LIG4-204ENST00000611712 PPM1GO15355 546 aaPredicted RBP11.28□□□□□ -0.6
LIG4-204ENST00000611712 ARHGEF11O15085 1522 aa11.28□□□□□ -0.6
LIG4-204ENST00000611712 NUP153P49790 1475 aaKnown RBP11.28□□□□□ -0.6
LIG4-204ENST00000611712 CDCA7LQ96GN5 454 aa11.27□□□□□ -0.6
LIG4-204ENST00000611712 SMG6Q86US8 1419 aaKnown RBP11.27□□□□□ -0.61
LIG4-204ENST00000611712 GPATCH8Q9UKJ3 1502 aaKnown RBP11.27□□□□□ -0.61
LIG4-204ENST00000611712 EIF3AQ14152 1382 aaKnown RBP11.26□□□□□ -0.61
LIG4-204ENST00000611712 SAFB2Q14151 953 aaKnown RBP eCLIP11.26□□□□□ -0.61
LIG4-204ENST00000611712 MAGI1Q96QZ7 1491 aaPredicted RBP11.26□□□□□ -0.61
LIG4-204ENST00000611712 SAMD9Q5K651 1589 aa11.26□□□□□ -0.61
LIG4-204ENST00000611712 CRBNQ96SW2 442 aa11.26□□□□□ -0.61
LIG4-204ENST00000611712 ESF1Q9H501 851 aaKnown RBP11.26□□□□□ -0.61
LIG4-204ENST00000611712 ARHGAP5Q13017 1502 aa11.25□□□□□ -0.61
LIG4-204ENST00000611712 ABCA5Q8WWZ7 1642 aa11.25□□□□□ -0.61
LIG4-204ENST00000611712 PDE4AP27815 886 aa11.25□□□□□ -0.61
LIG4-204ENST00000611712 AFAP1Q8N556 730 aa11.25□□□□□ -0.61
LIG4-204ENST00000611712 MAGI3Q5TCQ9 1506 aa11.25□□□□□ -0.61
LIG4-204ENST00000611712 WDR62O43379 1518 aa11.24□□□□□ -0.61
LIG4-204ENST00000611712 U2SURPO15042 1029 aaKnown RBP11.24□□□□□ -0.61
LIG4-204ENST00000611712 FTSJ3Q8IY81 847 aaKnown RBP11.24□□□□□ -0.61
LIG4-204ENST00000611712 ADAMTS8Q9UP79 889 aa11.23□□□□□ -0.61
LIG4-204ENST00000611712 POGKQ9P215 609 aa11.23□□□□□ -0.61
LIG4-204ENST00000611712 TRAK1Q9UPV9 953 aa11.23□□□□□ -0.61
LIG4-204ENST00000611712 ADAMTS12P58397 1594 aa11.23□□□□□ -0.61
LIG4-204ENST00000611712 APAF1O14727 1248 aa11.22□□□□□ -0.61
LIG4-204ENST00000611712 MSH5O43196 834 aa11.22□□□□□ -0.61
LIG4-204ENST00000611712 RAPGEF6Q8TEU7 1601 aa11.22□□□□□ -0.61
LIG4-204ENST00000611712 BECN1Q14457 450 aa11.22□□□□□ -0.61
LIG4-204ENST00000611712 MAPK8IP3Q9UPT6 1336 aa11.22□□□□□ -0.61
LIG4-204ENST00000611712 STK26Q9P289 416 aa11.21□□□□□ -0.61
LIG4-204ENST00000611712 SRPK2P78362 688 aaKnown RBP11.21□□□□□ -0.61
LIG4-204ENST00000611712 WASHC2CQ9Y4E1 1318 aa11.21□□□□□ -0.62
LIG4-204ENST00000611712 NUTM2DQ5VT03 806 aaPredicted RBP11.21□□□□□ -0.62
LIG4-204ENST00000611712 KIF21AQ7Z4S6 1674 aa11.2□□□□□ -0.62
LIG4-204ENST00000611712 U2AF1L5P0DN76 240 aaPredicted RBP11.2□□□□□ -0.62
LIG4-204ENST00000611712 U2AF1Q01081 240 aaKnown RBP eCLIP11.2□□□□□ -0.62
LIG4-204ENST00000611712 CCDC141Q6ZP82 1450 aa11.2□□□□□ -0.62
LIG4-204ENST00000611712 HSP90AA1P07900 732 aaKnown RBP11.19□□□□□ -0.62
LIG4-204ENST00000611712 KIAA0556O60303 1618 aa11.19□□□□□ -0.62
LIG4-204ENST00000611712 RRP7AQ9Y3A4 280 aaKnown RBP11.18□□□□□ -0.62
LIG4-204ENST00000611712 DISP1Q96F81 1524 aa11.18□□□□□ -0.62
LIG4-204ENST00000611712 MS4A1P11836 297 aa11.18□□□□□ -0.62
LIG4-204ENST00000611712 PPP2R1AP30153 589 aa11.18□□□□□ -0.62
LIG4-204ENST00000611712 KIF14Q15058 1648 aa11.18□□□□□ -0.62
LIG4-204ENST00000611712 CENPQQ7L2Z9 268 aaPredicted RBP11.18□□□□□ -0.62
LIG4-204ENST00000611712 STAC3Q96MF2 364 aa11.18□□□□□ -0.62
LIG4-204ENST00000611712 ARXQ96QS3 562 aa11.18□□□□□ -0.62
LIG4-204ENST00000611712 CFAP70Q5T0N1 1121 aa11.17□□□□□ -0.62
LIG4-204ENST00000611712 ATP10BO94823 1461 aa11.17□□□□□ -0.62
LIG4-204ENST00000611712 CENPJQ9HC77 1338 aaPredicted RBP11.17□□□□□ -0.62
LIG4-204ENST00000611712 ERBINQ96RT1 1412 aa11.17□□□□□ -0.62
LIG4-204ENST00000611712 PZPP20742 1482 aa11.17□□□□□ -0.62
LIG4-204ENST00000611712 PAK3O75914 559 aaPredicted RBP11.17□□□□□ -0.62
LIG4-204ENST00000611712 CLUAP1Q96AJ1 413 aa11.16□□□□□ -0.62
LIG4-204ENST00000611712 TEX14Q8IWB6 1497 aa11.16□□□□□ -0.62
LIG4-204ENST00000611712 E9PSI1 815 aa11.16□□□□□ -0.62
LIG4-204ENST00000611712 PLEKHH2Q8IVE3 1493 aa11.15□□□□□ -0.62
LIG4-204ENST00000611712 PLPPR3Q6T4P5 718 aa11.15□□□□□ -0.62
LIG4-204ENST00000611712 DNMT1P26358 1616 aaKnown RBP11.15□□□□□ -0.63
LIG4-204ENST00000611712 KDM6BO15054 1643 aa11.14□□□□□ -0.63
LIG4-204ENST00000611712 TARBP1Q13395 1621 aaKnown RBP11.14□□□□□ -0.63
LIG4-204ENST00000611712 SLC4A3P48751 1232 aa11.14□□□□□ -0.63
LIG4-204ENST00000611712 DHX29Q7Z478 1369 aaKnown RBP11.14□□□□□ -0.63
LIG4-204ENST00000611712 BCL2L13Q9BXK5 485 aa11.13□□□□□ -0.63
LIG4-204ENST00000611712 MYH16Q9H6N6 1097 aa11.13□□□□□ -0.63
LIG4-204ENST00000611712 RTN4Q9NQC3 1192 aaKnown RBP11.13□□□□□ -0.63
LIG4-204ENST00000611712 RALGAPBQ86X10 1494 aa11.13□□□□□ -0.63
LIG4-204ENST00000611712 PBRM1Q86U86 1689 aa11.13□□□□□ -0.63
LIG4-204ENST00000611712 FAM161AQ3B820 660 aa11.13□□□□□ -0.63
LIG4-204ENST00000611712 COG6Q9Y2V7 657 aa11.13□□□□□ -0.63
LIG4-204ENST00000611712 GCC2Q8IWJ2 1684 aa11.12□□□□□ -0.63
LIG4-204ENST00000611712 ITSN2Q9NZM3 1697 aa11.11□□□□□ -0.63
LIG4-204ENST00000611712 TMEM132EQ6IEE7 984 aa11.11□□□□□ -0.63
LIG4-204ENST00000611712 SPATA31E1Q6ZUB1 1445 aa11.1□□□□□ -0.63
LIG4-204ENST00000611712 RWDD1Q9H446 243 aaPredicted RBP11.1□□□□□ -0.63
LIG4-204ENST00000611712 CGNL1Q0VF96 1302 aa11.1□□□□□ -0.63
LIG4-204ENST00000611712 PNNQ9H307 717 aaKnown RBP11.1□□□□□ -0.63
LIG4-204ENST00000611712 HDGFL2Q7Z4V5 671 aaPredicted RBP11.1□□□□□ -0.63
LIG4-204ENST00000611712 DISP3Q9P2K9 1392 aa11.1□□□□□ -0.63
LIG4-204ENST00000611712 SCAPERQ9BY12 1400 aa11.1□□□□□ -0.63
LIG4-204ENST00000611712 MLECQ14165 292 aa11.09□□□□□ -0.63
LIG4-204ENST00000611712 PMFBP1Q8TBY8 1022 aa11.09□□□□□ -0.63
LIG4-204ENST00000611712 VGFO15240 615 aaPredicted RBP11.09□□□□□ -0.63
LIG4-204ENST00000611712 EIF5BO60841 1220 aaKnown RBP11.09□□□□□ -0.63
LIG4-204ENST00000611712 NGEFQ8N5V2 710 aa11.09□□□□□ -0.63
LIG4-204ENST00000611712 BACH2Q9BYV9 841 aa11.09□□□□□ -0.63
LIG4-204ENST00000611712 SMC4Q9NTJ3 1288 aa11.09□□□□□ -0.63
LIG4-204ENST00000611712 ITPRIPQ8IWB1 547 aa11.08□□□□□ -0.64
LIG4-204ENST00000611712 EVC2Q86UK5 1308 aa11.08□□□□□ -0.64
LIG4-204ENST00000611712 EIF4G3O43432 1585 aaKnown RBP11.08□□□□□ -0.64
LIG4-204ENST00000611712 SLKQ9H2G2 1235 aaPredicted RBP11.08□□□□□ -0.64
LIG4-204ENST00000611712 TERF2IPQ9NYB0 399 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms