RNA–Protein interactions for RNA: ENST00000588860.5

SMAD4-206, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-206ENST00000588860 PLXNC1O60486 1568 aa12.69□□□□□ -0.38
SMAD4-206ENST00000588860 TSPY4P0CV99 314 aa12.67□□□□□ -0.38
SMAD4-206ENST00000588860 TSPY10P0CW01 314 aa12.67□□□□□ -0.38
SMAD4-206ENST00000588860 MPHOSPH9Q99550 1183 aa12.67□□□□□ -0.38
SMAD4-206ENST00000588860 ASXL2Q76L83 1435 aa12.67□□□□□ -0.38
SMAD4-206ENST00000588860 PZPP20742 1482 aa12.66□□□□□ -0.38
SMAD4-206ENST00000588860 ANKRD50Q9ULJ7 1429 aa12.66□□□□□ -0.38
SMAD4-206ENST00000588860 KIAA1107Q9UPP5 1409 aa12.66□□□□□ -0.38
SMAD4-206ENST00000588860 DIEXFQ68CQ4 756 aaKnown RBP12.66□□□□□ -0.38
SMAD4-206ENST00000588860 TIMELESSQ9UNS1 1208 aa12.66□□□□□ -0.38
SMAD4-206ENST00000588860 TONSLQ96HA7 1378 aa12.66□□□□□ -0.38
SMAD4-206ENST00000588860 KIF15Q9NS87 1388 aa12.66□□□□□ -0.38
SMAD4-206ENST00000588860 COL17A1Q9UMD9 1497 aaPredicted RBP12.65□□□□□ -0.38
SMAD4-206ENST00000588860 RSPH4AQ5TD94 716 aa12.65□□□□□ -0.38
SMAD4-206ENST00000588860 ARHGEF12Q9NZN5 1544 aa12.65□□□□□ -0.38
SMAD4-206ENST00000588860 EFCAB2Q5VUJ9 269 aa12.64□□□□□ -0.39
SMAD4-206ENST00000588860 KDM5DQ9BY66 1539 aa12.63□□□□□ -0.39
SMAD4-206ENST00000588860 UNC13BO14795 1591 aa12.63□□□□□ -0.39
SMAD4-206ENST00000588860 CFAP74Q9C0B2 1584 aa12.63□□□□□ -0.39
SMAD4-206ENST00000588860 PPRC1Q5VV67 1664 aaKnown RBP12.63□□□□□ -0.39
SMAD4-206ENST00000588860 FANCAO15360 1455 aa12.6□□□□□ -0.39
SMAD4-206ENST00000588860 DUOX2Q9NRD8 1548 aa12.6□□□□□ -0.39
SMAD4-206ENST00000588860 ANKRD30BQ9BXX2 1392 aa12.59□□□□□ -0.39
SMAD4-206ENST00000588860 TRAPPC8Q9Y2L5 1435 aa12.59□□□□□ -0.39
SMAD4-206ENST00000588860 INO80Q9ULG1 1556 aaPredicted RBP12.59□□□□□ -0.39
SMAD4-206ENST00000588860 ZFYVE16Q7Z3T8 1539 aa12.58□□□□□ -0.4
SMAD4-206ENST00000588860 PPP1R15AO75807 674 aaPredicted RBP12.58□□□□□ -0.4
SMAD4-206ENST00000588860 GLI2P10070 1586 aa12.58□□□□□ -0.4
SMAD4-206ENST00000588860 FOXD4L1Q9NU39 408 aa12.58□□□□□ -0.4
SMAD4-206ENST00000588860 IQGAP3Q86VI3 1631 aa12.58□□□□□ -0.4
SMAD4-206ENST00000588860 RPRD2Q5VT52 1461 aaKnown RBP12.57□□□□□ -0.4
SMAD4-206ENST00000588860 NUP155O75694 1391 aa12.56□□□□□ -0.4
SMAD4-206ENST00000588860 AKT1S1Q96B36 256 aa12.56□□□□□ -0.4
SMAD4-206ENST00000588860 ATP7AQ04656 1500 aa12.56□□□□□ -0.4
SMAD4-206ENST00000588860 FAM135AQ9P2D6 1515 aa12.56□□□□□ -0.4
SMAD4-206ENST00000588860 ERBINQ96RT1 1412 aa12.54□□□□□ -0.4
SMAD4-206ENST00000588860 CERKQ8TCT0 537 aa12.54□□□□□ -0.4
SMAD4-206ENST00000588860 PKD2Q13563 968 aa12.53□□□□□ -0.4
SMAD4-206ENST00000588860 SPAG9O60271 1321 aaKnown RBP12.53□□□□□ -0.4
SMAD4-206ENST00000588860 RTEL1-TNFRSF6BF6WH68 1400 aa12.53□□□□□ -0.4
SMAD4-206ENST00000588860 TEX14Q8IWB6 1497 aa12.53□□□□□ -0.4
SMAD4-206ENST00000588860 MAP3K4Q9Y6R4 1608 aa12.52□□□□□ -0.4
SMAD4-206ENST00000588860 KIDINS220Q9ULH0 1771 aa12.52□□□□□ -0.41
SMAD4-206ENST00000588860 ZBTB22O15209 634 aa12.52□□□□□ -0.41
SMAD4-206ENST00000588860 CD109Q6YHK3 1445 aa12.52□□□□□ -0.41
SMAD4-206ENST00000588860 SCAPERQ9BY12 1400 aa12.52□□□□□ -0.41
SMAD4-206ENST00000588860 MAGI2Q86UL8 1455 aa12.52□□□□□ -0.41
SMAD4-206ENST00000588860 DEPDC5O75140 1603 aa12.51□□□□□ -0.41
SMAD4-206ENST00000588860 ZBTB12Q9Y330 459 aaPredicted RBP12.51□□□□□ -0.41
SMAD4-206ENST00000588860 EIF2AK4Q9P2K8 1649 aaKnown RBP12.51□□□□□ -0.41
SMAD4-206ENST00000588860 SP7Q8TDD2 431 aaPredicted RBP12.5□□□□□ -0.41
SMAD4-206ENST00000588860 AFAP1Q8N556 730 aa12.49□□□□□ -0.41
SMAD4-206ENST00000588860 L3MBTL2Q969R5 705 aa12.48□□□□□ -0.41
SMAD4-206ENST00000588860 KDM5CP41229 1560 aa12.47□□□□□ -0.41
SMAD4-206ENST00000588860 ZNF518AQ6AHZ1 1483 aa12.47□□□□□ -0.41
SMAD4-206ENST00000588860 E9PCH4 1651 aa12.47□□□□□ -0.41
SMAD4-206ENST00000588860 PTPRMP28827 1452 aa12.46□□□□□ -0.41
SMAD4-206ENST00000588860 SPHKAPQ2M3C7 1700 aa12.46□□□□□ -0.41
SMAD4-206ENST00000588860 RICTORQ6R327 1708 aa12.46□□□□□ -0.41
SMAD4-206ENST00000588860 TET3O43151 1660 aa12.46□□□□□ -0.41
SMAD4-206ENST00000588860 MYT1LQ9UL68 1186 aa12.46□□□□□ -0.41
SMAD4-206ENST00000588860 NEO1Q92859 1461 aa12.46□□□□□ -0.42
SMAD4-206ENST00000588860 POGZQ7Z3K3 1410 aa12.45□□□□□ -0.42
SMAD4-206ENST00000588860 POLR1AO95602 1720 aaPredicted RBP12.45□□□□□ -0.42
SMAD4-206ENST00000588860 SPATA31D1Q6ZQQ2 1576 aa12.44□□□□□ -0.42
SMAD4-206ENST00000588860 CEP152O94986 1710 aa12.44□□□□□ -0.42
SMAD4-206ENST00000588860 ABCA6Q8N139 1617 aa12.44□□□□□ -0.42
SMAD4-206ENST00000588860 MIER1Q8N108 512 aa12.43□□□□□ -0.42
SMAD4-206ENST00000588860 MROH1Q8NDA8 1641 aa12.43□□□□□ -0.42
SMAD4-206ENST00000588860 RNF17Q9BXT8 1623 aaKnown RBP12.43□□□□□ -0.42
SMAD4-206ENST00000588860 PRDM15P57071 1507 aaPredicted RBP12.42□□□□□ -0.42
SMAD4-206ENST00000588860 HIRIP3Q9BW71 556 aaPredicted RBP12.42□□□□□ -0.42
SMAD4-206ENST00000588860 ATF5Q9Y2D1 282 aaPredicted RBP12.42□□□□□ -0.42
SMAD4-206ENST00000588860 VWDEQ8N2E2 1590 aa12.42□□□□□ -0.42
SMAD4-206ENST00000588860 BCORL1Q5H9F3 1711 aa12.41□□□□□ -0.42
SMAD4-206ENST00000588860 REM2Q8IYK8 340 aaPredicted RBP12.41□□□□□ -0.42
SMAD4-206ENST00000588860 CCDC144AA2RUR9 1427 aa12.4□□□□□ -0.42
SMAD4-206ENST00000588860 NBPF8Q3BBV2 869 aa12.4□□□□□ -0.42
SMAD4-206ENST00000588860 DHX29Q7Z478 1369 aaKnown RBP12.4□□□□□ -0.42
SMAD4-206ENST00000588860 A2MP01023 1474 aa12.4□□□□□ -0.43
SMAD4-206ENST00000588860 MLH3Q9UHC1 1453 aa12.4□□□□□ -0.43
SMAD4-206ENST00000588860 HSPA2P54652 639 aa12.39□□□□□ -0.43
SMAD4-206ENST00000588860 KANK1Q14678 1352 aa12.39□□□□□ -0.43
SMAD4-206ENST00000588860 PLA2R1Q13018 1463 aa12.39□□□□□ -0.43
SMAD4-206ENST00000588860 FRMPD1Q5SYB0 1578 aa12.39□□□□□ -0.43
SMAD4-206ENST00000588860 CFAP65Q6ZU64 1925 aaKnown RBP12.39□□□□□ -0.43
SMAD4-206ENST00000588860 ATP10AO60312 1499 aa12.38□□□□□ -0.43
SMAD4-206ENST00000588860 DIP2CQ9Y2E4 1556 aa12.38□□□□□ -0.43
SMAD4-206ENST00000588860 ADAMTSL3P82987 1691 aa12.38□□□□□ -0.43
SMAD4-206ENST00000588860 TRPM2O94759 1503 aa12.37□□□□□ -0.43
SMAD4-206ENST00000588860 CLTCL1P53675 1640 aa12.37□□□□□ -0.43
SMAD4-206ENST00000588860 KIF1BO60333 1816 aa12.37□□□□□ -0.43
SMAD4-206ENST00000588860 HSPA5P11021 654 aaKnown RBP12.37□□□□□ -0.43
SMAD4-206ENST00000588860 PIP4P2Q8N4L2 257 aa12.37□□□□□ -0.43
SMAD4-206ENST00000588860 TRPM1Q7Z4N2 1603 aa12.37□□□□□ -0.43
SMAD4-206ENST00000588860 UHRF1BP1Q6BDS2 1440 aa12.37□□□□□ -0.43
SMAD4-206ENST00000588860 RALGAPBQ86X10 1494 aa12.36□□□□□ -0.43
SMAD4-206ENST00000588860 KIF3BO15066 747 aa12.36□□□□□ -0.43
SMAD4-206ENST00000588860 EIF4G2P78344 907 aaKnown RBP eCLIP12.36□□□□□ -0.43
SMAD4-206ENST00000588860 ZNF326Q5BKZ1 582 aaKnown RBP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms