RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 MYO15BQ96JP2 1530 aa3.91□□□□□ -1.78
SMCHD1-211ENST00000584897 PPP1R3GB7ZBB8 358 aa3.91□□□□□ -1.78
SMCHD1-211ENST00000584897 PAXIP1Q6ZW49 1069 aaPredicted RBP3.91□□□□□ -1.78
SMCHD1-211ENST00000584897 NBPF26B4DH59 902 aa3.9□□□□□ -1.78
SMCHD1-211ENST00000584897 DSG2Q14126 1118 aa3.9□□□□□ -1.78
SMCHD1-211ENST00000584897 E2F4Q16254 413 aa3.9□□□□□ -1.78
SMCHD1-211ENST00000584897 GTPBP6O43824 516 aaPredicted RBP3.9□□□□□ -1.78
SMCHD1-211ENST00000584897 ADGRD1Q6QNK2 874 aa3.9□□□□□ -1.78
SMCHD1-211ENST00000584897 KCNK17Q96T54 332 aa3.9□□□□□ -1.78
SMCHD1-211ENST00000584897 CECR2Q9BXF3 1484 aa3.9□□□□□ -1.79
SMCHD1-211ENST00000584897 ANO8Q9HCE9 1232 aaPredicted RBP3.89□□□□□ -1.79
SMCHD1-211ENST00000584897 FOSBP53539 338 aa3.89□□□□□ -1.79
SMCHD1-211ENST00000584897 WNT2BQ93097 391 aa3.88□□□□□ -1.79
SMCHD1-211ENST00000584897 RABGEF1Q9UJ41 708 aa3.88□□□□□ -1.79
SMCHD1-211ENST00000584897 LAPTM4AQ15012 233 aa3.87□□□□□ -1.79
SMCHD1-211ENST00000584897 TMEM92Q6UXU6 159 aa3.87□□□□□ -1.79
SMCHD1-211ENST00000584897 PPP1R37O75864 691 aa3.87□□□□□ -1.79
SMCHD1-211ENST00000584897 KMT5BQ4FZB7 885 aa3.87□□□□□ -1.79
SMCHD1-211ENST00000584897 SLF2Q8IX21 1173 aa3.87□□□□□ -1.79
SMCHD1-211ENST00000584897 LRCH3Q96II8 777 aa3.87□□□□□ -1.79
SMCHD1-211ENST00000584897 PLA2G2EQ9NZK7 142 aa3.86□□□□□ -1.79
SMCHD1-211ENST00000584897 ARIH1Q9Y4X5 557 aaPredicted RBP3.86□□□□□ -1.79
SMCHD1-211ENST00000584897 MAP3K7O43318 606 aa3.85□□□□□ -1.79
SMCHD1-211ENST00000584897 IFFO2Q5TF58 517 aa3.85□□□□□ -1.79
SMCHD1-211ENST00000584897 ARHGEF1Q92888 912 aaKnown RBP3.85□□□□□ -1.79
SMCHD1-211ENST00000584897 KCTD12Q96CX2 325 aaKnown RBP3.85□□□□□ -1.79
SMCHD1-211ENST00000584897 RBM27Q9P2N5 1060 aaKnown RBP3.85□□□□□ -1.79
SMCHD1-211ENST00000584897 PPP4CP60510 307 aa3.85□□□□□ -1.79
SMCHD1-211ENST00000584897 CDKN2AIPQ9NXV6 580 aaPredicted RBP3.85□□□□□ -1.79
SMCHD1-211ENST00000584897 RBM46Q8TBY0 533 aaKnown RBP3.85□□□□□ -1.79
SMCHD1-211ENST00000584897 FAM98CQ17RN3 349 aaKnown RBP3.84□□□□□ -1.79
SMCHD1-211ENST00000584897 VPS9D1Q9Y2B5 631 aa3.84□□□□□ -1.79
SMCHD1-211ENST00000584897 EIF4G1Q04637 1599 aaKnown RBP3.84□□□□□ -1.8
SMCHD1-211ENST00000584897 CAMK2BQ13554 666 aa3.84□□□□□ -1.8
SMCHD1-211ENST00000584897 KCNC4Q03721 635 aa3.83□□□□□ -1.8
SMCHD1-211ENST00000584897 GRIPAP1Q4V328 841 aa3.83□□□□□ -1.8
SMCHD1-211ENST00000584897 TSR3Q9UJK0 312 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-211ENST00000584897 KRTAP3-3Q9BYR6 98 aa3.83□□□□□ -1.8
SMCHD1-211ENST00000584897 KRTAP3-2Q9BYR7 98 aa3.83□□□□□ -1.8
SMCHD1-211ENST00000584897 TRIM6-TRIM34B2RNG4 842 aa3.82□□□□□ -1.8
SMCHD1-211ENST00000584897 NBR1Q14596 966 aa3.82□□□□□ -1.8
SMCHD1-211ENST00000584897 TRIM52Q96A61 297 aa3.82□□□□□ -1.8
SMCHD1-211ENST00000584897 OATP04181 439 aa3.81□□□□□ -1.8
SMCHD1-211ENST00000584897 C6orf132Q5T0Z8 1188 aa3.81□□□□□ -1.8
SMCHD1-211ENST00000584897 PDIA6Q15084 440 aa3.81□□□□□ -1.8
SMCHD1-211ENST00000584897 PTPN5P54829 565 aa3.81□□□□□ -1.8
SMCHD1-211ENST00000584897 NKX1-1Q15270 411 aaPredicted RBP3.8□□□□□ -1.8
SMCHD1-211ENST00000584897 ZBED2Q9BTP6 218 aa3.8□□□□□ -1.8
SMCHD1-211ENST00000584897 KHSRPQ92945 711 aaKnown RBP eCLIP3.8□□□□□ -1.82e-7■■■□□ 18.6
SMCHD1-211ENST00000584897 DPYSL4O14531 572 aa3.8□□□□□ -1.8
SMCHD1-211ENST00000584897 FCHSD2O94868 740 aa3.8□□□□□ -1.8
SMCHD1-211ENST00000584897 THSD4Q6ZMP0 1018 aa3.8□□□□□ -1.8
SMCHD1-211ENST00000584897 IL21Q9HBE4 155 aa3.8□□□□□ -1.8
SMCHD1-211ENST00000584897 PRSS12P56730 875 aa3.79□□□□□ -1.8
SMCHD1-211ENST00000584897 EN1Q05925 392 aaPredicted RBP3.79□□□□□ -1.8
SMCHD1-211ENST00000584897 RBM33Q96EV2 1170 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-211ENST00000584897 GRXCR2A6NFK2 248 aa3.79□□□□□ -1.8
SMCHD1-211ENST00000584897 KIAA1468Q9P260 1216 aa3.78□□□□□ -1.8
SMCHD1-211ENST00000584897 PNMA3Q9UL41 463 aa3.78□□□□□ -1.8
SMCHD1-211ENST00000584897 THOC2Q8NI27 1593 aaKnown RBP3.78□□□□□ -1.8
SMCHD1-211ENST00000584897 PSEN2P49810 448 aa3.78□□□□□ -1.8
SMCHD1-211ENST00000584897 KRI1Q8N9T8 703 aaKnown RBP3.78□□□□□ -1.8
SMCHD1-211ENST00000584897 ADAM33Q9BZ11 813 aa3.78□□□□□ -1.8
SMCHD1-211ENST00000584897 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP3.78□□□□□ -1.8
SMCHD1-211ENST00000584897 NR1I2O75469 434 aa3.78□□□□□ -1.8
SMCHD1-211ENST00000584897 SULF1Q8IWU6 871 aa3.78□□□□□ -1.8
SMCHD1-211ENST00000584897 HPS5Q9UPZ3 1129 aa3.78□□□□□ -1.8
SMCHD1-211ENST00000584897 AXIN2Q9Y2T1 843 aa3.78□□□□□ -1.8
SMCHD1-211ENST00000584897 NCKAP5LQ9HCH0 1330 aa3.77□□□□□ -1.81
SMCHD1-211ENST00000584897 SOWAHBA6NEL2 793 aa3.77□□□□□ -1.81
SMCHD1-211ENST00000584897 HRO43593 1189 aa3.77□□□□□ -1.81
SMCHD1-211ENST00000584897 PCDHGA10Q9Y5H3 936 aa3.77□□□□□ -1.81
SMCHD1-211ENST00000584897 NUTM2FA1L443 756 aa3.77□□□□□ -1.81
SMCHD1-211ENST00000584897 DNAJB2P25686 324 aa3.77□□□□□ -1.81
SMCHD1-211ENST00000584897 VSIG10Q8N0Z9 540 aa3.77□□□□□ -1.81
SMCHD1-211ENST00000584897 IRX2Q9BZI1 471 aaPredicted RBP3.77□□□□□ -1.81
SMCHD1-211ENST00000584897 DAXXQ9UER7 740 aaPredicted RBP3.77□□□□□ -1.81
SMCHD1-211ENST00000584897 ZFRQ96KR1 1074 aaKnown RBP3.76□□□□□ -1.81
SMCHD1-211ENST00000584897 HAP1P54257 671 aaPredicted RBP3.76□□□□□ -1.81
SMCHD1-211ENST00000584897 DMRTA1Q5VZB9 504 aa3.76□□□□□ -1.81
SMCHD1-211ENST00000584897 TMUB1Q9BVT8 246 aa3.76□□□□□ -1.81
SMCHD1-211ENST00000584897 KDM4FA0A1W2PPD8 638 aa3.76□□□□□ -1.81
SMCHD1-211ENST00000584897 DDX12PQ92771 950 aa3.76□□□□□ -1.81
SMCHD1-211ENST00000584897 TATDN2Q93075 761 aa3.76□□□□□ -1.81
SMCHD1-211ENST00000584897 PRKCSHP14314 528 aaPredicted RBP3.75□□□□□ -1.81
SMCHD1-211ENST00000584897 POTEB3A0JP26 581 aa3.75□□□□□ -1.81
SMCHD1-211ENST00000584897 POTEBQ6S5H4 581 aa3.75□□□□□ -1.81
SMCHD1-211ENST00000584897 RNF40O75150 1001 aa3.75□□□□□ -1.81
SMCHD1-211ENST00000584897 CDCA7LQ96GN5 454 aa3.75□□□□□ -1.81
SMCHD1-211ENST00000584897 A0A0G2JS52 829 aa3.74□□□□□ -1.81
SMCHD1-211ENST00000584897 DIXDC1Q155Q3 683 aa3.74□□□□□ -1.81
SMCHD1-211ENST00000584897 Q3C1V9 767 aa3.74□□□□□ -1.81
SMCHD1-211ENST00000584897 HIC1Q14526 733 aa3.74□□□□□ -1.81
SMCHD1-211ENST00000584897 LMOD2Q6P5Q4 547 aa3.73□□□□□ -1.81
SMCHD1-211ENST00000584897 ERICH6Q7L0X2 663 aa3.73□□□□□ -1.81
SMCHD1-211ENST00000584897 EMILIN3Q9NT22 766 aa3.73□□□□□ -1.81
SMCHD1-211ENST00000584897 BHMG1C9JSJ3 638 aaPredicted RBP3.72□□□□□ -1.81
SMCHD1-211ENST00000584897 PCDHB3Q9Y5E6 796 aa3.72□□□□□ -1.81
SMCHD1-211ENST00000584897 ITGBL1O95965 494 aaPredicted RBP3.72□□□□□ -1.81
SMCHD1-211ENST00000584897 EIF4ENIF1Q9NRA8 985 aaKnown RBP3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms