RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 KIDINS220Q9ULH0 1771 aa18.24■□□□□ 0.51
CDK5RAP3-217ENST00000580287 ERBINQ96RT1 1412 aa18.24■□□□□ 0.51
CDK5RAP3-217ENST00000580287 COL17A1Q9UMD9 1497 aaPredicted RBP18.24■□□□□ 0.51
CDK5RAP3-217ENST00000580287 KIF13AQ9H1H9 1805 aa18.23■□□□□ 0.51
CDK5RAP3-217ENST00000580287 PPRC1Q5VV67 1664 aaKnown RBP18.23■□□□□ 0.51
CDK5RAP3-217ENST00000580287 YEATS2Q9ULM3 1422 aa18.23■□□□□ 0.51
CDK5RAP3-217ENST00000580287 GGT6Q6P531 493 aa18.22■□□□□ 0.51
CDK5RAP3-217ENST00000580287 TONSLQ96HA7 1378 aa18.22■□□□□ 0.51
CDK5RAP3-217ENST00000580287 KDM5CP41229 1560 aa18.22■□□□□ 0.51
CDK5RAP3-217ENST00000580287 MLH3Q9UHC1 1453 aa18.21■□□□□ 0.51
CDK5RAP3-217ENST00000580287 FAM135AQ9P2D6 1515 aa18.21■□□□□ 0.51
CDK5RAP3-217ENST00000580287 GTF3C3Q9Y5Q9 886 aa18.2■□□□□ 0.5
CDK5RAP3-217ENST00000580287 A2MP01023 1474 aa18.19■□□□□ 0.5
CDK5RAP3-217ENST00000580287 TEX14Q8IWB6 1497 aa18.19■□□□□ 0.5
CDK5RAP3-217ENST00000580287 PPP1R15AO75807 674 aaPredicted RBP18.19■□□□□ 0.5
CDK5RAP3-217ENST00000580287 L3MBTL2Q969R5 705 aa18.18■□□□□ 0.5
CDK5RAP3-217ENST00000580287 HECW2Q9P2P5 1572 aa18.17■□□□□ 0.5
CDK5RAP3-217ENST00000580287 FRMPD1Q5SYB0 1578 aa18.16■□□□□ 0.5
CDK5RAP3-217ENST00000580287 KDM5DQ9BY66 1539 aa18.16■□□□□ 0.5
CDK5RAP3-217ENST00000580287 RICTORQ6R327 1708 aa18.16■□□□□ 0.5
CDK5RAP3-217ENST00000580287 ABCA6Q8N139 1617 aa18.15■□□□□ 0.5
CDK5RAP3-217ENST00000580287 UNC13BO14795 1591 aa18.14■□□□□ 0.49
CDK5RAP3-217ENST00000580287 CENPBP07199 599 aaPredicted RBP18.14■□□□□ 0.49
CDK5RAP3-217ENST00000580287 TIMELESSQ9UNS1 1208 aa18.13■□□□□ 0.49
CDK5RAP3-217ENST00000580287 RPRD2Q5VT52 1461 aaKnown RBP18.11■□□□□ 0.49
CDK5RAP3-217ENST00000580287 MAGI2Q86UL8 1455 aa18.11■□□□□ 0.49
CDK5RAP3-217ENST00000580287 HIRIP3Q9BW71 556 aaPredicted RBP18.11■□□□□ 0.49
CDK5RAP3-217ENST00000580287 PLA2R1Q13018 1463 aa18.1■□□□□ 0.49
CDK5RAP3-217ENST00000580287 DIP2CQ9Y2E4 1556 aa18.1■□□□□ 0.49
CDK5RAP3-217ENST00000580287 RGL3Q3MIN7 710 aa18.1■□□□□ 0.49
CDK5RAP3-217ENST00000580287 MLECQ14165 292 aa18.09■□□□□ 0.49
CDK5RAP3-217ENST00000580287 KANK1Q14678 1352 aa18.09■□□□□ 0.49
CDK5RAP3-217ENST00000580287 PRKCSHP14314 528 aaPredicted RBP18.08■□□□□ 0.49
CDK5RAP3-217ENST00000580287 IQGAP3Q86VI3 1631 aa18.08■□□□□ 0.49
CDK5RAP3-217ENST00000580287 WASHC2CQ9Y4E1 1318 aa18.08■□□□□ 0.48
CDK5RAP3-217ENST00000580287 ZNF326Q5BKZ1 582 aaKnown RBP18.08■□□□□ 0.48
CDK5RAP3-217ENST00000580287 KDM2AQ9Y2K7 1162 aa18.07■□□□□ 0.48
CDK5RAP3-217ENST00000580287 MROH1Q8NDA8 1641 aa18.07■□□□□ 0.48
CDK5RAP3-217ENST00000580287 NBPF8Q3BBV2 869 aa18.06■□□□□ 0.48
CDK5RAP3-217ENST00000580287 DEPDC5O75140 1603 aa18.04■□□□□ 0.48
CDK5RAP3-217ENST00000580287 CCDC144AA2RUR9 1427 aa18.04■□□□□ 0.48
CDK5RAP3-217ENST00000580287 ATP10AO60312 1499 aa18.03■□□□□ 0.48
CDK5RAP3-217ENST00000580287 ZMYM4Q5VZL5 1548 aa18.03■□□□□ 0.48
CDK5RAP3-217ENST00000580287 DCAF11Q8TEB1 546 aa18.02■□□□□ 0.48
CDK5RAP3-217ENST00000580287 PRDM15P57071 1507 aaPredicted RBP18.02■□□□□ 0.47
CDK5RAP3-217ENST00000580287 EIF2AK4Q9P2K8 1649 aaKnown RBP18.01■□□□□ 0.47
CDK5RAP3-217ENST00000580287 VWDEQ8N2E2 1590 aa18.01■□□□□ 0.47
CDK5RAP3-217ENST00000580287 E9PCH4 1651 aa18■□□□□ 0.47
CDK5RAP3-217ENST00000580287 MYT1Q01538 1121 aa18■□□□□ 0.47
CDK5RAP3-217ENST00000580287 ARID4BQ4LE39 1312 aaPredicted RBP17.99■□□□□ 0.47
CDK5RAP3-217ENST00000580287 NPATQ14207 1427 aa17.97■□□□□ 0.47
CDK5RAP3-217ENST00000580287 SIGLEC1Q9BZZ2 1709 aa17.96■□□□□ 0.47
CDK5RAP3-217ENST00000580287 RNF17Q9BXT8 1623 aaKnown RBP17.96■□□□□ 0.47
CDK5RAP3-217ENST00000580287 UGGT1Q9NYU2 1555 aa17.96■□□□□ 0.47
CDK5RAP3-217ENST00000580287 CEP152O94986 1710 aa17.95■□□□□ 0.46
CDK5RAP3-217ENST00000580287 ABCC3O15438 1527 aa17.95■□□□□ 0.46
CDK5RAP3-217ENST00000580287 TET3O43151 1660 aa17.94■□□□□ 0.46
CDK5RAP3-217ENST00000580287 FBXO31Q5XUX0 539 aaPredicted RBP17.94■□□□□ 0.46
CDK5RAP3-217ENST00000580287 CHGAP10645 457 aaKnown RBP17.94■□□□□ 0.46
CDK5RAP3-217ENST00000580287 PTPRTO14522 1441 aa17.94■□□□□ 0.46
CDK5RAP3-217ENST00000580287 CFAP65Q6ZU64 1925 aaKnown RBP17.94■□□□□ 0.46
CDK5RAP3-217ENST00000580287 EFCAB6Q5THR3 1501 aa17.93■□□□□ 0.46
CDK5RAP3-217ENST00000580287 LMTK2Q8IWU2 1503 aa17.9■□□□□ 0.46
CDK5RAP3-217ENST00000580287 ARHGEF40Q8TER5 1519 aa17.9■□□□□ 0.46
CDK5RAP3-217ENST00000580287 NCBP3Q53F19 620 aaKnown RBP17.89■□□□□ 0.45
CDK5RAP3-217ENST00000580287 TRPM2O94759 1503 aa17.88■□□□□ 0.45
CDK5RAP3-217ENST00000580287 HSPA5P11021 654 aaKnown RBP17.88■□□□□ 0.45
CDK5RAP3-217ENST00000580287 BCORL1Q5H9F3 1711 aa17.88■□□□□ 0.45
CDK5RAP3-217ENST00000580287 SPATA31E1Q6ZUB1 1445 aa17.87■□□□□ 0.45
CDK5RAP3-217ENST00000580287 CLTCL1P53675 1640 aa17.87■□□□□ 0.45
CDK5RAP3-217ENST00000580287 SENP3Q9H4L4 574 aaPredicted RBP17.87■□□□□ 0.45
CDK5RAP3-217ENST00000580287 NBPF1Q3BBV0 1214 aa17.86■□□□□ 0.45
CDK5RAP3-217ENST00000580287 SPHKAPQ2M3C7 1700 aa17.86■□□□□ 0.45
CDK5RAP3-217ENST00000580287 IDI1Q13907 227 aa17.85■□□□□ 0.45
CDK5RAP3-217ENST00000580287 AGLP35573 1532 aa17.85■□□□□ 0.45
CDK5RAP3-217ENST00000580287 NUTM2DQ5VT03 806 aaPredicted RBP17.85■□□□□ 0.45
CDK5RAP3-217ENST00000580287 ESF1Q9H501 851 aaKnown RBP17.85■□□□□ 0.45
CDK5RAP3-217ENST00000580287 CAMSAP1Q5T5Y3 1602 aa17.83■□□□□ 0.45
CDK5RAP3-217ENST00000580287 REREQ9P2R6 1566 aa17.83■□□□□ 0.45
CDK5RAP3-217ENST00000580287 EIF4G2P78344 907 aaKnown RBP eCLIP17.83■□□□□ 0.44
CDK5RAP3-217ENST00000580287 CEBPAP49715 358 aaPredicted RBP17.82■□□□□ 0.44
CDK5RAP3-217ENST00000580287 CARD11Q9BXL7 1154 aa17.81■□□□□ 0.44
CDK5RAP3-217ENST00000580287 NOS1P29475 1434 aa17.81■□□□□ 0.44
CDK5RAP3-217ENST00000580287 DDX10Q13206 875 aaKnown RBP17.8■□□□□ 0.44
CDK5RAP3-217ENST00000580287 UHRF1BP1Q6BDS2 1440 aa17.8■□□□□ 0.44
CDK5RAP3-217ENST00000580287 PRAG1Q86YV5 1406 aa17.8■□□□□ 0.44
CDK5RAP3-217ENST00000580287 ARHGAP31Q2M1Z3 1444 aa17.79■□□□□ 0.44
CDK5RAP3-217ENST00000580287 C11orf95C9JLR9 678 aaPredicted RBP17.79■□□□□ 0.44
CDK5RAP3-217ENST00000580287 ZMYM3Q14202 1370 aa17.79■□□□□ 0.44
CDK5RAP3-217ENST00000580287 ADGRF5Q8IZF2 1346 aa17.79■□□□□ 0.44
CDK5RAP3-217ENST00000580287 CNTLNQ9NXG0 1405 aa17.79■□□□□ 0.44
CDK5RAP3-217ENST00000580287 PPP6R1Q9UPN7 881 aa17.78■□□□□ 0.44
CDK5RAP3-217ENST00000580287 CLTCQ00610 1675 aaKnown RBP17.77■□□□□ 0.44
CDK5RAP3-217ENST00000580287 SYNMO15061 1565 aa17.77■□□□□ 0.44
CDK5RAP3-217ENST00000580287 ROCK2O75116 1388 aaKnown RBP17.77■□□□□ 0.44
CDK5RAP3-217ENST00000580287 USP47Q96K76 1375 aa17.75■□□□□ 0.43
CDK5RAP3-217ENST00000580287 SLC52A1Q9NWF4 448 aa17.74■□□□□ 0.43
CDK5RAP3-217ENST00000580287 CFAP70Q5T0N1 1121 aa17.74■□□□□ 0.43
CDK5RAP3-217ENST00000580287 ZC3H13Q5T200 1668 aaKnown RBP17.73■□□□□ 0.43
CDK5RAP3-217ENST00000580287 ST20-MTHFSA0A0A6YYL1 179 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms