RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 C6orf132Q5T0Z8 1188 aa12.83□□□□□ -0.36
NUP88-213ENST00000576862 LMOD2Q6P5Q4 547 aa12.83□□□□□ -0.36
NUP88-213ENST00000576862 CDHR5Q9HBB8 845 aa12.82□□□□□ -0.36
NUP88-213ENST00000576862 AXIN2Q9Y2T1 843 aa12.8□□□□□ -0.36
NUP88-213ENST00000576862 PTPREP23469 700 aa12.79□□□□□ -0.36
NUP88-213ENST00000576862 PSEN2P49810 448 aa12.79□□□□□ -0.36
NUP88-213ENST00000576862 ARHGAP33O14559 1287 aa12.78□□□□□ -0.36
NUP88-213ENST00000576862 COL9A1P20849 921 aa12.78□□□□□ -0.36
NUP88-213ENST00000576862 KCNK17Q96T54 332 aa12.78□□□□□ -0.36
NUP88-213ENST00000576862 NPDC1Q9NQX5 325 aaPredicted RBP12.78□□□□□ -0.36
NUP88-213ENST00000576862 PBX2P40425 430 aa12.77□□□□□ -0.37
NUP88-213ENST00000576862 NUTM2FA1L443 756 aa12.76□□□□□ -0.37
NUP88-213ENST00000576862 GPR37O15354 613 aa12.76□□□□□ -0.37
NUP88-213ENST00000576862 GPIHBP1Q8IV16 184 aa12.75□□□□□ -0.37
NUP88-213ENST00000576862 PTGDRQ13258 359 aa12.74□□□□□ -0.37
NUP88-213ENST00000576862 DMRTA1Q5VZB9 504 aa12.74□□□□□ -0.37
NUP88-213ENST00000576862 KRTAP3-3Q9BYR6 98 aa12.74□□□□□ -0.37
NUP88-213ENST00000576862 KRTAP3-2Q9BYR7 98 aa12.74□□□□□ -0.37
NUP88-213ENST00000576862 PPP1R3GB7ZBB8 358 aa12.73□□□□□ -0.37
NUP88-213ENST00000576862 CDAN1Q8IWY9 1227 aa12.73□□□□□ -0.37
NUP88-213ENST00000576862 FCHSD2O94868 740 aa12.69□□□□□ -0.38
NUP88-213ENST00000576862 CERKQ8TCT0 537 aa12.69□□□□□ -0.38
NUP88-213ENST00000576862 ZC3H15Q8WU90 426 aaKnown RBP12.69□□□□□ -0.38
NUP88-213ENST00000576862 ZBED2Q9BTP6 218 aa12.69□□□□□ -0.38
NUP88-213ENST00000576862 KCNH8Q96L42 1107 aa12.68□□□□□ -0.38
NUP88-213ENST00000576862 LSM11P83369 360 aaKnown RBP eCLIP12.67□□□□□ -0.38
NUP88-213ENST00000576862 PROX2Q3B8N5 592 aa12.66□□□□□ -0.38
NUP88-213ENST00000576862 HIC1Q14526 733 aa12.65□□□□□ -0.38
NUP88-213ENST00000576862 CDCA7LQ96GN5 454 aa12.65□□□□□ -0.38
NUP88-213ENST00000576862 SLC4A5Q9BY07 1137 aa12.65□□□□□ -0.38
NUP88-213ENST00000576862 FECHP22830 423 aa12.64□□□□□ -0.39
NUP88-213ENST00000576862 PRSS12P56730 875 aa12.64□□□□□ -0.39
NUP88-213ENST00000576862 TTC13Q8NBP0 860 aa12.64□□□□□ -0.39
NUP88-213ENST00000576862 FAM198AQ9UFP1 575 aa12.64□□□□□ -0.39
NUP88-213ENST00000576862 GNPATO15228 680 aa12.63□□□□□ -0.39
NUP88-213ENST00000576862 TSKSQ9UJT2 592 aa12.63□□□□□ -0.39
NUP88-213ENST00000576862 VPS9D1Q9Y2B5 631 aa12.63□□□□□ -0.39
NUP88-213ENST00000576862 ZMYND10O75800 440 aa12.62□□□□□ -0.39
NUP88-213ENST00000576862 PADI6Q6TGC4 694 aa12.62□□□□□ -0.39
NUP88-213ENST00000576862 RBM27Q9P2N5 1060 aaKnown RBP12.62□□□□□ -0.39
NUP88-213ENST00000576862 TRIM6-TRIM34B2RNG4 842 aa12.61□□□□□ -0.39
NUP88-213ENST00000576862 TK2O00142 265 aa12.61□□□□□ -0.39
NUP88-213ENST00000576862 ADGRD1Q6QNK2 874 aa12.6□□□□□ -0.39
NUP88-213ENST00000576862 ANKRD13DQ6ZTN6 518 aa12.6□□□□□ -0.39
NUP88-213ENST00000576862 ONECUT3O60422 494 aaPredicted RBP12.59□□□□□ -0.39
NUP88-213ENST00000576862 PCDH10Q9P2E7 1040 aa12.59□□□□□ -0.39
NUP88-213ENST00000576862 C3orf80F5H4A9 247 aa12.58□□□□□ -0.4
NUP88-213ENST00000576862 BARGINQ6ZT62 677 aa12.58□□□□□ -0.4
NUP88-213ENST00000576862 HRO43593 1189 aa12.56□□□□□ -0.4
NUP88-213ENST00000576862 TPRNQ4KMQ1 711 aa12.56□□□□□ -0.4
NUP88-213ENST00000576862 KIAA1468Q9P260 1216 aa12.56□□□□□ -0.4
NUP88-213ENST00000576862 RABGEF1Q9UJ41 708 aa12.56□□□□□ -0.4
NUP88-213ENST00000576862 BHMG1C9JSJ3 638 aaPredicted RBP12.55□□□□□ -0.4
NUP88-213ENST00000576862 FAM161AQ3B820 660 aa12.53□□□□□ -0.4
NUP88-213ENST00000576862 MAP2K5Q13163 448 aa12.52□□□□□ -0.41
NUP88-213ENST00000576862 PACS2Q86VP3 889 aa12.52□□□□□ -0.41
NUP88-213ENST00000576862 ADGRG1Q9Y653 693 aa12.52□□□□□ -0.41
NUP88-213ENST00000576862 IRF6O14896 467 aa12.5□□□□□ -0.41
NUP88-213ENST00000576862 PRKCSHP14314 528 aaPredicted RBP12.5□□□□□ -0.41
NUP88-213ENST00000576862 NUDT18Q6ZVK8 323 aa12.5□□□□□ -0.41
NUP88-213ENST00000576862 TATDN2Q93075 761 aa12.5□□□□□ -0.41
NUP88-213ENST00000576862 MINK1Q8N4C8 1332 aaPredicted RBP12.5□□□□□ -0.41
NUP88-213ENST00000576862 SMAPO00193 183 aa12.49□□□□□ -0.41
NUP88-213ENST00000576862 PNMA3Q9UL41 463 aa12.49□□□□□ -0.41
NUP88-213ENST00000576862 NBPF26B4DH59 902 aa12.48□□□□□ -0.41
NUP88-213ENST00000576862 EYA1Q99502 592 aa12.48□□□□□ -0.41
NUP88-213ENST00000576862 SEPT9Q9UHD8 586 aaPredicted RBP12.48□□□□□ -0.41
NUP88-213ENST00000576862 KRI1Q8N9T8 703 aaKnown RBP12.47□□□□□ -0.41
NUP88-213ENST00000576862 CCDC102AQ96A19 550 aa12.47□□□□□ -0.41
NUP88-213ENST00000576862 NBPF3Q9H094 633 aa12.46□□□□□ -0.41
NUP88-213ENST00000576862 SLC24A3Q9HC58 644 aa12.46□□□□□ -0.41
NUP88-213ENST00000576862 PXYLP1Q8TE99 480 aa12.45□□□□□ -0.42
NUP88-213ENST00000576862 METTL3Q86U44 580 aaKnown RBP12.44□□□□□ -0.42
NUP88-213ENST00000576862 PHOX2BQ99453 314 aa12.44□□□□□ -0.42
NUP88-213ENST00000576862 OATP04181 439 aa12.43□□□□□ -0.42
NUP88-213ENST00000576862 LAPTM4BQ86VI4 370 aa12.43□□□□□ -0.42
NUP88-213ENST00000576862 SPNS2Q8IVW8 549 aa12.43□□□□□ -0.42
NUP88-213ENST00000576862 MRPL50Q8N5N7 158 aaKnown RBP12.43□□□□□ -0.42
NUP88-213ENST00000576862 RBM46Q8TBY0 533 aaKnown RBP12.43□□□□□ -0.42
NUP88-213ENST00000576862 FAM98CQ17RN3 349 aaKnown RBP12.42□□□□□ -0.42
NUP88-213ENST00000576862 AK7Q96M32 723 aa12.39□□□□□ -0.43
NUP88-213ENST00000576862 RCCD1A6NED2 376 aa12.38□□□□□ -0.43
NUP88-213ENST00000576862 NLRP7Q8WX94 980 aa12.38□□□□□ -0.43
NUP88-213ENST00000576862 ZFRQ96KR1 1074 aaKnown RBP12.38□□□□□ -0.43
NUP88-213ENST00000576862 STAC3Q96MF2 364 aa12.38□□□□□ -0.43
NUP88-213ENST00000576862 TRIM66O15016 1216 aa12.37□□□□□ -0.43
NUP88-213ENST00000576862 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.35□□□□□ -0.43
NUP88-213ENST00000576862 DNAJB2P25686 324 aa12.35□□□□□ -0.43
NUP88-213ENST00000576862 TMEM134Q9H6X4 195 aa12.34□□□□□ -0.43
NUP88-213ENST00000576862 MYT1LQ9UL68 1186 aa12.34□□□□□ -0.43
NUP88-213ENST00000576862 GOLGA8CPA6NN73 597 aa12.32□□□□□ -0.44
NUP88-213ENST00000576862 AMHR2Q16671 573 aa12.32□□□□□ -0.44
NUP88-213ENST00000576862 SAMD7Q7Z3H4 446 aa12.32□□□□□ -0.44
NUP88-213ENST00000576862 SWT1Q5T5J6 900 aaKnown RBP12.31□□□□□ -0.44
NUP88-213ENST00000576862 WNT2BQ93097 391 aa12.31□□□□□ -0.44
NUP88-213ENST00000576862 TMUB1Q9BVT8 246 aa12.3□□□□□ -0.44
NUP88-213ENST00000576862 REPIN1Q9BWE0 567 aaKnown RBP12.3□□□□□ -0.44
NUP88-213ENST00000576862 MDM2Q00987 491 aaPredicted RBP12.29□□□□□ -0.44
NUP88-213ENST00000576862 ANKK1Q8NFD2 765 aa12.29□□□□□ -0.44
NUP88-213ENST00000576862 KCTD12Q96CX2 325 aaKnown RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms