RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 ARHGAP5Q13017 1502 aa12.99□□□□□ -0.33
CCDC40-212ENST00000574799 NBPF8Q3BBV2 869 aa12.99□□□□□ -0.33
CCDC40-212ENST00000574799 KIAA1107Q9UPP5 1409 aa12.98□□□□□ -0.33
CCDC40-212ENST00000574799 ZNF777Q9ULD5 760 aaPredicted RBP12.97□□□□□ -0.33
CCDC40-212ENST00000574799 FAM135AQ9P2D6 1515 aa12.97□□□□□ -0.33
CCDC40-212ENST00000574799 L3MBTL2Q969R5 705 aa12.97□□□□□ -0.33
CCDC40-212ENST00000574799 DAXXQ9UER7 740 aaPredicted RBP12.97□□□□□ -0.33
CCDC40-212ENST00000574799 PLCH2O75038 1416 aa12.96□□□□□ -0.33
CCDC40-212ENST00000574799 NEFMP07197 916 aa12.96□□□□□ -0.33
CCDC40-212ENST00000574799 ANKRD30AQ9BXX3 1397 aa12.96□□□□□ -0.33
CCDC40-212ENST00000574799 PLA2R1Q13018 1463 aa12.96□□□□□ -0.33
CCDC40-212ENST00000574799 DEPDC5O75140 1603 aa12.96□□□□□ -0.33
CCDC40-212ENST00000574799 POLR3GLQ9BT43 218 aa12.96□□□□□ -0.33
CCDC40-212ENST00000574799 ARAP3Q8WWN8 1544 aa12.96□□□□□ -0.34
CCDC40-212ENST00000574799 KDM5CP41229 1560 aa12.96□□□□□ -0.34
CCDC40-212ENST00000574799 ZFYVE16Q7Z3T8 1539 aa12.95□□□□□ -0.34
CCDC40-212ENST00000574799 INO80Q9ULG1 1556 aaPredicted RBP12.95□□□□□ -0.34
CCDC40-212ENST00000574799 KIF15Q9NS87 1388 aa12.94□□□□□ -0.34
CCDC40-212ENST00000574799 C11orf95C9JLR9 678 aaPredicted RBP12.94□□□□□ -0.34
CCDC40-212ENST00000574799 MRS2Q9HD23 443 aa12.94□□□□□ -0.34
CCDC40-212ENST00000574799 IPO9Q96P70 1041 aaKnown RBP12.93□□□□□ -0.34
CCDC40-212ENST00000574799 TRAPPC8Q9Y2L5 1435 aa12.93□□□□□ -0.34
CCDC40-212ENST00000574799 MROH1Q8NDA8 1641 aa12.92□□□□□ -0.34
CCDC40-212ENST00000574799 E9PCH4 1651 aa12.92□□□□□ -0.34
CCDC40-212ENST00000574799 WASHC2AQ641Q2 1341 aa12.92□□□□□ -0.34
CCDC40-212ENST00000574799 SENP3-EIF4A1A0A087X0R7 540 aa12.92□□□□□ -0.34
CCDC40-212ENST00000574799 WDR7Q9Y4E6 1490 aa12.91□□□□□ -0.34
CCDC40-212ENST00000574799 TRPM1Q7Z4N2 1603 aa12.9□□□□□ -0.34
CCDC40-212ENST00000574799 SLC4A1APQ9BWU0 796 aaKnown RBP12.9□□□□□ -0.34
CCDC40-212ENST00000574799 PLEKHH2Q8IVE3 1493 aa12.9□□□□□ -0.34
CCDC40-212ENST00000574799 UHRF1BP1Q6BDS2 1440 aa12.9□□□□□ -0.34
CCDC40-212ENST00000574799 KIDINS220Q9ULH0 1771 aa12.89□□□□□ -0.35
CCDC40-212ENST00000574799 DUOX2Q9NRD8 1548 aa12.89□□□□□ -0.35
CCDC40-212ENST00000574799 VWDEQ8N2E2 1590 aa12.88□□□□□ -0.35
CCDC40-212ENST00000574799 HSPA5P11021 654 aaKnown RBP12.87□□□□□ -0.35
CCDC40-212ENST00000574799 PKD2Q13563 968 aa12.87□□□□□ -0.35
CCDC40-212ENST00000574799 NUP155O75694 1391 aa12.86□□□□□ -0.35
CCDC40-212ENST00000574799 ERBINQ96RT1 1412 aa12.85□□□□□ -0.35
CCDC40-212ENST00000574799 ATP10AO60312 1499 aa12.84□□□□□ -0.35
CCDC40-212ENST00000574799 CEP152O94986 1710 aa12.84□□□□□ -0.35
CCDC40-212ENST00000574799 ASXL2Q76L83 1435 aa12.84□□□□□ -0.35
CCDC40-212ENST00000574799 RALGAPBQ86X10 1494 aa12.83□□□□□ -0.35
CCDC40-212ENST00000574799 SPHKAPQ2M3C7 1700 aa12.83□□□□□ -0.36
CCDC40-212ENST00000574799 RNF17Q9BXT8 1623 aaKnown RBP12.83□□□□□ -0.36
CCDC40-212ENST00000574799 FRMPD1Q5SYB0 1578 aa12.82□□□□□ -0.36
CCDC40-212ENST00000574799 ATP7AQ04656 1500 aa12.81□□□□□ -0.36
CCDC40-212ENST00000574799 A2MP01023 1474 aa12.81□□□□□ -0.36
CCDC40-212ENST00000574799 EIF2AK4Q9P2K8 1649 aaKnown RBP12.81□□□□□ -0.36
CCDC40-212ENST00000574799 PPM1GO15355 546 aaPredicted RBP12.81□□□□□ -0.36
CCDC40-212ENST00000574799 FANCAO15360 1455 aa12.81□□□□□ -0.36
CCDC40-212ENST00000574799 LAMC1P11047 1609 aa12.8□□□□□ -0.36
CCDC40-212ENST00000574799 CLTCL1P53675 1640 aa12.8□□□□□ -0.36
CCDC40-212ENST00000574799 RTEL1-TNFRSF6BF6WH68 1400 aa12.8□□□□□ -0.36
CCDC40-212ENST00000574799 PRDM15P57071 1507 aaPredicted RBP12.8□□□□□ -0.36
CCDC40-212ENST00000574799 IFT172Q9UG01 1749 aa12.8□□□□□ -0.36
CCDC40-212ENST00000574799 RSPH4AQ5TD94 716 aa12.79□□□□□ -0.36
CCDC40-212ENST00000574799 CCDC7Q96M83 1385 aa12.79□□□□□ -0.36
CCDC40-212ENST00000574799 TET3O43151 1660 aa12.79□□□□□ -0.36
CCDC40-212ENST00000574799 TSPY4P0CV99 314 aa12.79□□□□□ -0.36
CCDC40-212ENST00000574799 TSPY10P0CW01 314 aa12.79□□□□□ -0.36
CCDC40-212ENST00000574799 UBE2Q2Q8WVN8 375 aa12.78□□□□□ -0.36
CCDC40-212ENST00000574799 BRPF3Q9ULD4 1205 aa12.78□□□□□ -0.36
CCDC40-212ENST00000574799 CNTLNQ9NXG0 1405 aa12.78□□□□□ -0.36
CCDC40-212ENST00000574799 MADDQ8WXG6 1647 aa12.77□□□□□ -0.36
CCDC40-212ENST00000574799 MROH2AA6NES4 1674 aa12.77□□□□□ -0.36
CCDC40-212ENST00000574799 MAP3K4Q9Y6R4 1608 aa12.77□□□□□ -0.37
CCDC40-212ENST00000574799 PRAG1Q86YV5 1406 aa12.76□□□□□ -0.37
CCDC40-212ENST00000574799 PPRC1Q5VV67 1664 aaKnown RBP12.76□□□□□ -0.37
CCDC40-212ENST00000574799 TRPM2O94759 1503 aa12.76□□□□□ -0.37
CCDC40-212ENST00000574799 EIF4G2P78344 907 aaKnown RBP eCLIP12.76□□□□□ -0.37
CCDC40-212ENST00000574799 AFAP1Q8N556 730 aa12.76□□□□□ -0.37
CCDC40-212ENST00000574799 GLIPR1L2Q4G1C9 344 aa12.76□□□□□ -0.37
CCDC40-212ENST00000574799 KIF7Q2M1P5 1343 aa12.76□□□□□ -0.37
CCDC40-212ENST00000574799 DHX29Q7Z478 1369 aaKnown RBP12.76□□□□□ -0.37
CCDC40-212ENST00000574799 ABCA6Q8N139 1617 aa12.76□□□□□ -0.37
CCDC40-212ENST00000574799 RICTORQ6R327 1708 aa12.75□□□□□ -0.37
CCDC40-212ENST00000574799 SIGLEC1Q9BZZ2 1709 aa12.75□□□□□ -0.37
CCDC40-212ENST00000574799 IQGAP1P46940 1657 aa12.75□□□□□ -0.37
CCDC40-212ENST00000574799 CCDC184Q52MB2 194 aa12.75□□□□□ -0.37
CCDC40-212ENST00000574799 PTPRTO14522 1441 aa12.74□□□□□ -0.37
CCDC40-212ENST00000574799 ADGRL1O94910 1474 aa12.73□□□□□ -0.37
CCDC40-212ENST00000574799 USP35Q9P2H5 1018 aa12.73□□□□□ -0.37
CCDC40-212ENST00000574799 USP47Q96K76 1375 aa12.72□□□□□ -0.37
CCDC40-212ENST00000574799 UGGT1Q9NYU2 1555 aa12.72□□□□□ -0.37
CCDC40-212ENST00000574799 EFCAB2Q5VUJ9 269 aa12.72□□□□□ -0.37
CCDC40-212ENST00000574799 RIMBP3CA6NJZ7 1639 aa12.71□□□□□ -0.37
CCDC40-212ENST00000574799 RIMBP3BA6NNM3 1639 aa12.71□□□□□ -0.37
CCDC40-212ENST00000574799 RIMBP3Q9UFD9 1639 aa12.71□□□□□ -0.37
CCDC40-212ENST00000574799 NEURL4Q96JN8 1562 aa12.71□□□□□ -0.38
CCDC40-212ENST00000574799 ZBED9Q6R2W3 1325 aa12.7□□□□□ -0.38
CCDC40-212ENST00000574799 ARXQ96QS3 562 aa12.7□□□□□ -0.38
CCDC40-212ENST00000574799 CFAP74Q9C0B2 1584 aa12.7□□□□□ -0.38
CCDC40-212ENST00000574799 GPRASP1Q5JY77 1395 aa12.7□□□□□ -0.38
CCDC40-212ENST00000574799 OSCARQ8IYS5 282 aa12.7□□□□□ -0.38
CCDC40-212ENST00000574799 EFCAB6Q5THR3 1501 aa12.7□□□□□ -0.38
CCDC40-212ENST00000574799 GSE1Q14687 1217 aa12.7□□□□□ -0.38
CCDC40-212ENST00000574799 SCAPERQ9BY12 1400 aa12.7□□□□□ -0.38
CCDC40-212ENST00000574799 HECW2Q9P2P5 1572 aa12.69□□□□□ -0.38
CCDC40-212ENST00000574799 DDRGK1Q96HY6 314 aa12.68□□□□□ -0.38
CCDC40-212ENST00000574799 LMTK2Q8IWU2 1503 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms