RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 RGL3Q3MIN7 710 aa10.01□□□□□ -0.81
SMG1-215ENST00000568239 POGZQ7Z3K3 1410 aa10□□□□□ -0.81
SMG1-215ENST00000568239 NBPF8Q3BBV2 869 aa10□□□□□ -0.81
SMG1-215ENST00000568239 TSPOAP1O95153 1857 aa10□□□□□ -0.81
SMG1-215ENST00000568239 TEX14Q8IWB6 1497 aa10□□□□□ -0.81
SMG1-215ENST00000568239 CCDC144AA2RUR9 1427 aa10□□□□□ -0.81
SMG1-215ENST00000568239 DHX29Q7Z478 1369 aaKnown RBP9.99□□□□□ -0.81
SMG1-215ENST00000568239 NEO1Q92859 1461 aa9.99□□□□□ -0.81
SMG1-215ENST00000568239 KANK1Q14678 1352 aa9.99□□□□□ -0.81
SMG1-215ENST00000568239 DDX10Q13206 875 aaKnown RBP9.99□□□□□ -0.81
SMG1-215ENST00000568239 DCAF11Q8TEB1 546 aa9.99□□□□□ -0.81
SMG1-215ENST00000568239 KIDINS220Q9ULH0 1771 aa9.99□□□□□ -0.81
SMG1-215ENST00000568239 IQGAP3Q86VI3 1631 aa9.99□□□□□ -0.81
SMG1-215ENST00000568239 GGT6Q6P531 493 aa9.99□□□□□ -0.81
SMG1-215ENST00000568239 EIF4G2P78344 907 aaKnown RBP eCLIP9.98□□□□□ -0.81
SMG1-215ENST00000568239 MAP3K4Q9Y6R4 1608 aa9.98□□□□□ -0.81
SMG1-215ENST00000568239 HSPA5P11021 654 aaKnown RBP9.97□□□□□ -0.81
SMG1-215ENST00000568239 DIP2BQ9P265 1576 aa9.97□□□□□ -0.81
SMG1-215ENST00000568239 A2MP01023 1474 aa9.97□□□□□ -0.81
SMG1-215ENST00000568239 MAGI2Q86UL8 1455 aa9.97□□□□□ -0.81
SMG1-215ENST00000568239 GLI2P10070 1586 aa9.96□□□□□ -0.82
SMG1-215ENST00000568239 HECW2Q9P2P5 1572 aa9.96□□□□□ -0.82
SMG1-215ENST00000568239 MLH3Q9UHC1 1453 aa9.95□□□□□ -0.82
SMG1-215ENST00000568239 KDM5CP41229 1560 aa9.95□□□□□ -0.82
SMG1-215ENST00000568239 PLA2R1Q13018 1463 aa9.95□□□□□ -0.82
SMG1-215ENST00000568239 YTHDC1Q96MU7 727 aaKnown RBP9.93□□□□□ -0.82
SMG1-215ENST00000568239 E9PCH4 1651 aa9.92□□□□□ -0.82
SMG1-215ENST00000568239 DEPDC5O75140 1603 aa9.92□□□□□ -0.82
SMG1-215ENST00000568239 EIF2AK4Q9P2K8 1649 aaKnown RBP9.92□□□□□ -0.82
SMG1-215ENST00000568239 WASHC2CQ9Y4E1 1318 aa9.92□□□□□ -0.82
SMG1-215ENST00000568239 SENP3Q9H4L4 574 aaPredicted RBP9.92□□□□□ -0.82
SMG1-215ENST00000568239 ABCA6Q8N139 1617 aa9.92□□□□□ -0.82
SMG1-215ENST00000568239 CFAP65Q6ZU64 1925 aaKnown RBP9.92□□□□□ -0.82
SMG1-215ENST00000568239 CARD11Q9BXL7 1154 aa9.91□□□□□ -0.82
SMG1-215ENST00000568239 YEATS2Q9ULM3 1422 aa9.91□□□□□ -0.82
SMG1-215ENST00000568239 RICTORQ6R327 1708 aa9.91□□□□□ -0.82
SMG1-215ENST00000568239 TET3O43151 1660 aa9.9□□□□□ -0.82
SMG1-215ENST00000568239 PRDM15P57071 1507 aaPredicted RBP9.9□□□□□ -0.82
SMG1-215ENST00000568239 POLR3GLQ9BT43 218 aa9.9□□□□□ -0.82
SMG1-215ENST00000568239 ATP10AO60312 1499 aa9.9□□□□□ -0.82
SMG1-215ENST00000568239 FRMPD1Q5SYB0 1578 aa9.9□□□□□ -0.82
SMG1-215ENST00000568239 MROH1Q8NDA8 1641 aa9.89□□□□□ -0.83
SMG1-215ENST00000568239 CHGAP10645 457 aaKnown RBP9.89□□□□□ -0.83
SMG1-215ENST00000568239 DIP2CQ9Y2E4 1556 aa9.89□□□□□ -0.83
SMG1-215ENST00000568239 ROCK2O75116 1388 aaKnown RBP9.88□□□□□ -0.83
SMG1-215ENST00000568239 USP47Q96K76 1375 aa9.88□□□□□ -0.83
SMG1-215ENST00000568239 CEP152O94986 1710 aa9.88□□□□□ -0.83
SMG1-215ENST00000568239 PPRC1Q5VV67 1664 aaKnown RBP9.88□□□□□ -0.83
SMG1-215ENST00000568239 WASHC2AQ641Q2 1341 aa9.88□□□□□ -0.83
SMG1-215ENST00000568239 VWDEQ8N2E2 1590 aa9.88□□□□□ -0.83
SMG1-215ENST00000568239 KIF13AQ9H1H9 1805 aa9.88□□□□□ -0.83
SMG1-215ENST00000568239 SPHKAPQ2M3C7 1700 aa9.88□□□□□ -0.83
SMG1-215ENST00000568239 UHRF1BP1Q6BDS2 1440 aa9.87□□□□□ -0.83
SMG1-215ENST00000568239 C11orf95C9JLR9 678 aaPredicted RBP9.87□□□□□ -0.83
SMG1-215ENST00000568239 TRHP20396 242 aaPredicted RBP9.87□□□□□ -0.83
SMG1-215ENST00000568239 TRPM2O94759 1503 aa9.87□□□□□ -0.83
SMG1-215ENST00000568239 ADRA2BP18089 450 aa9.87□□□□□ -0.83
SMG1-215ENST00000568239 MLECQ14165 292 aa9.86□□□□□ -0.83
SMG1-215ENST00000568239 NBPF1Q3BBV0 1214 aa9.86□□□□□ -0.83
SMG1-215ENST00000568239 RNF17Q9BXT8 1623 aaKnown RBP9.86□□□□□ -0.83
SMG1-215ENST00000568239 PTPRTO14522 1441 aa9.86□□□□□ -0.83
SMG1-215ENST00000568239 EFCAB6Q5THR3 1501 aa9.86□□□□□ -0.83
SMG1-215ENST00000568239 ANP32CO43423 234 aa9.86□□□□□ -0.83
SMG1-215ENST00000568239 PRAG1Q86YV5 1406 aa9.85□□□□□ -0.83
SMG1-215ENST00000568239 RALGAPBQ86X10 1494 aa9.85□□□□□ -0.83
SMG1-215ENST00000568239 UGGT1Q9NYU2 1555 aa9.85□□□□□ -0.83
SMG1-215ENST00000568239 CLTCL1P53675 1640 aa9.85□□□□□ -0.83
SMG1-215ENST00000568239 ST20-MTHFSA0A0A6YYL1 179 aa9.84□□□□□ -0.83
SMG1-215ENST00000568239 NPATQ14207 1427 aa9.84□□□□□ -0.83
SMG1-215ENST00000568239 SPATA31E1Q6ZUB1 1445 aa9.84□□□□□ -0.83
SMG1-215ENST00000568239 COL17A1Q9UMD9 1497 aaPredicted RBP9.84□□□□□ -0.83
SMG1-215ENST00000568239 ABCC3O15438 1527 aa9.83□□□□□ -0.84
SMG1-215ENST00000568239 CCDC7Q96M83 1385 aa9.83□□□□□ -0.84
SMG1-215ENST00000568239 ZMYM4Q5VZL5 1548 aa9.83□□□□□ -0.84
SMG1-215ENST00000568239 KIF7Q2M1P5 1343 aa9.83□□□□□ -0.84
SMG1-215ENST00000568239 CENPBP07199 599 aaPredicted RBP9.83□□□□□ -0.84
SMG1-215ENST00000568239 LMTK2Q8IWU2 1503 aa9.82□□□□□ -0.84
SMG1-215ENST00000568239 CNGB1Q14028 1251 aaPredicted RBP9.82□□□□□ -0.84
SMG1-215ENST00000568239 ARID4BQ4LE39 1312 aaPredicted RBP9.82□□□□□ -0.84
SMG1-215ENST00000568239 BCORL1Q5H9F3 1711 aa9.81□□□□□ -0.84
SMG1-215ENST00000568239 TRPM1Q7Z4N2 1603 aa9.81□□□□□ -0.84
SMG1-215ENST00000568239 KIF1BO60333 1816 aa9.81□□□□□ -0.84
SMG1-215ENST00000568239 CAMSAP1Q5T5Y3 1602 aa9.8□□□□□ -0.84
SMG1-215ENST00000568239 ESF1Q9H501 851 aaKnown RBP9.8□□□□□ -0.84
SMG1-215ENST00000568239 NUTM2DQ5VT03 806 aaPredicted RBP9.79□□□□□ -0.84
SMG1-215ENST00000568239 FBXO31Q5XUX0 539 aaPredicted RBP9.78□□□□□ -0.84
SMG1-215ENST00000568239 ADGRF5Q8IZF2 1346 aa9.78□□□□□ -0.84
SMG1-215ENST00000568239 CNTLNQ9NXG0 1405 aa9.78□□□□□ -0.84
SMG1-215ENST00000568239 STAC3Q96MF2 364 aa9.78□□□□□ -0.84
SMG1-215ENST00000568239 CFAP70Q5T0N1 1121 aa9.78□□□□□ -0.84
SMG1-215ENST00000568239 IDI1Q13907 227 aa9.77□□□□□ -0.85
SMG1-215ENST00000568239 STAG3Q9UJ98 1225 aa9.77□□□□□ -0.85
SMG1-215ENST00000568239 SIGLEC1Q9BZZ2 1709 aa9.76□□□□□ -0.85
SMG1-215ENST00000568239 MADDQ8WXG6 1647 aa9.76□□□□□ -0.85
SMG1-215ENST00000568239 MROH2AA6NES4 1674 aa9.76□□□□□ -0.85
SMG1-215ENST00000568239 ZC3H13Q5T200 1668 aaKnown RBP9.76□□□□□ -0.85
SMG1-215ENST00000568239 GPRASP1Q5JY77 1395 aa9.76□□□□□ -0.85
SMG1-215ENST00000568239 NOS1P29475 1434 aa9.76□□□□□ -0.85
SMG1-215ENST00000568239 POLR1AO95602 1720 aaPredicted RBP9.75□□□□□ -0.85
SMG1-215ENST00000568239 SLC52A1Q9NWF4 448 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms