RNA–Protein interactions for RNA: ENST00000564703.1

RAB40C-208, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 921 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-208ENST00000564703 RIMS1Q86UR5 1692 aaKnown RBP24.11■■□□□ 1.45
RAB40C-208ENST00000564703 ERBINQ96RT1 1412 aa24.1■■□□□ 1.45
RAB40C-208ENST00000564703 CNTLNQ9NXG0 1405 aa24.1■■□□□ 1.45
RAB40C-208ENST00000564703 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.1■■□□□ 1.45
RAB40C-208ENST00000564703 CEBPAP49715 358 aaPredicted RBP24.08■■□□□ 1.45
RAB40C-208ENST00000564703 ANKRD50Q9ULJ7 1429 aa24.07■■□□□ 1.44
RAB40C-208ENST00000564703 EIF2AK4Q9P2K8 1649 aaKnown RBP24.06■■□□□ 1.44
RAB40C-208ENST00000564703 ZMYM3Q14202 1370 aa24.04■■□□□ 1.44
RAB40C-208ENST00000564703 KANK1Q14678 1352 aa24.04■■□□□ 1.44
RAB40C-208ENST00000564703 CLTCQ00610 1675 aaKnown RBP23.99■■□□□ 1.43
RAB40C-208ENST00000564703 RNF17Q9BXT8 1623 aaKnown RBP23.98■■□□□ 1.43
RAB40C-208ENST00000564703 KDM5DQ9BY66 1539 aa23.96■■□□□ 1.43
RAB40C-208ENST00000564703 FAM135AQ9P2D6 1515 aa23.96■■□□□ 1.43
RAB40C-208ENST00000564703 MROH2AA6NES4 1674 aa23.95■■□□□ 1.42
RAB40C-208ENST00000564703 SETD1BQ9UPS6 1966 aaKnown RBP23.94■■□□□ 1.42
RAB40C-208ENST00000564703 C3P01024 1663 aa23.92■■□□□ 1.42
RAB40C-208ENST00000564703 NAIPQ13075 1403 aa23.91■■□□□ 1.42
RAB40C-208ENST00000564703 HFM1A2PYH4 1435 aa23.9■■□□□ 1.42
RAB40C-208ENST00000564703 TRIM52Q96A61 297 aa23.89■■□□□ 1.41
RAB40C-208ENST00000564703 NUP155O75694 1391 aa23.89■■□□□ 1.41
RAB40C-208ENST00000564703 ABCC3O15438 1527 aa23.89■■□□□ 1.41
RAB40C-208ENST00000564703 PRDM15P57071 1507 aaPredicted RBP23.89■■□□□ 1.41
RAB40C-208ENST00000564703 NPATQ14207 1427 aa23.88■■□□□ 1.41
RAB40C-208ENST00000564703 FBXO31Q5XUX0 539 aaPredicted RBP23.88■■□□□ 1.41
RAB40C-208ENST00000564703 ZC3H13Q5T200 1668 aaKnown RBP23.88■■□□□ 1.41
RAB40C-208ENST00000564703 DEPDC5O75140 1603 aa23.88■■□□□ 1.41
RAB40C-208ENST00000564703 MROH1Q8NDA8 1641 aa23.88■■□□□ 1.41
RAB40C-208ENST00000564703 CEP152O94986 1710 aa23.84■■□□□ 1.41
RAB40C-208ENST00000564703 PZPP20742 1482 aa23.84■■□□□ 1.41
RAB40C-208ENST00000564703 ACIN1Q9UKV3 1341 aaKnown RBP23.84■■□□□ 1.41
RAB40C-208ENST00000564703 UHRF1BP1Q6BDS2 1440 aa23.83■■□□□ 1.4
RAB40C-208ENST00000564703 CFAP65Q6ZU64 1925 aaKnown RBP23.82■■□□□ 1.4
RAB40C-208ENST00000564703 GCC2Q8IWJ2 1684 aa23.82■■□□□ 1.4
RAB40C-208ENST00000564703 ARHGAP31Q2M1Z3 1444 aa23.81■■□□□ 1.4
RAB40C-208ENST00000564703 TNRQ92752 1358 aa23.8■■□□□ 1.4
RAB40C-208ENST00000564703 CAMSAP1Q5T5Y3 1602 aa23.8■■□□□ 1.4
RAB40C-208ENST00000564703 LMTK2Q8IWU2 1503 aa23.79■■□□□ 1.4
RAB40C-208ENST00000564703 UNC13BO14795 1591 aa23.79■■□□□ 1.4
RAB40C-208ENST00000564703 VWDEQ8N2E2 1590 aa23.79■■□□□ 1.4
RAB40C-208ENST00000564703 SETD5Q9C0A6 1442 aa23.79■■□□□ 1.4
RAB40C-208ENST00000564703 PREX1Q8TCU6 1659 aa23.77■■□□□ 1.4
RAB40C-208ENST00000564703 HSPA2P54652 639 aa23.76■■□□□ 1.39
RAB40C-208ENST00000564703 TRIM26Q12899 539 aaPredicted RBP23.75■■□□□ 1.39
RAB40C-208ENST00000564703 SLC4A1APQ9BWU0 796 aaKnown RBP23.74■■□□□ 1.39
RAB40C-208ENST00000564703 LMTK3Q96Q04 1460 aa23.74■■□□□ 1.39
RAB40C-208ENST00000564703 ERVK-7P63135 1459 aa23.72■■□□□ 1.39
RAB40C-208ENST00000564703 IQGAP3Q86VI3 1631 aa23.72■■□□□ 1.39
RAB40C-208ENST00000564703 TET3O43151 1660 aa23.72■■□□□ 1.39
RAB40C-208ENST00000564703 STAG3Q9UJ98 1225 aa23.71■■□□□ 1.39
RAB40C-208ENST00000564703 EFCAB6Q5THR3 1501 aa23.7■■□□□ 1.38
RAB40C-208ENST00000564703 RPRD2Q5VT52 1461 aaKnown RBP23.7■■□□□ 1.38
RAB40C-208ENST00000564703 HRCP23327 699 aa23.69■■□□□ 1.38
RAB40C-208ENST00000564703 THEMISQ8N1K5 641 aaPredicted RBP23.69■■□□□ 1.38
RAB40C-208ENST00000564703 SPATA31D1Q6ZQQ2 1576 aa23.69■■□□□ 1.38
RAB40C-208ENST00000564703 NLRP1Q9C000 1473 aa23.68■■□□□ 1.38
RAB40C-208ENST00000564703 RAB3GAP2Q9H2M9 1393 aa23.68■■□□□ 1.38
RAB40C-208ENST00000564703 SLC52A1Q9NWF4 448 aa23.68■■□□□ 1.38
RAB40C-208ENST00000564703 PKD2Q13563 968 aa23.67■■□□□ 1.38
RAB40C-208ENST00000564703 A2ML1A8K2U0 1454 aa23.66■■□□□ 1.38
RAB40C-208ENST00000564703 IDI1Q13907 227 aa23.65■■□□□ 1.38
RAB40C-208ENST00000564703 MPHOSPH9Q99550 1183 aa23.65■■□□□ 1.38
RAB40C-208ENST00000564703 MYO3AQ8NEV4 1616 aa23.65■■□□□ 1.38
RAB40C-208ENST00000564703 NOS1P29475 1434 aa23.63■■□□□ 1.37
RAB40C-208ENST00000564703 CEP170BQ9Y4F5 1589 aaPredicted RBP23.62■■□□□ 1.37
RAB40C-208ENST00000564703 E9PCH4 1651 aa23.62■■□□□ 1.37
RAB40C-208ENST00000564703 DMRT2Q9Y5R5 561 aa23.61■■□□□ 1.37
RAB40C-208ENST00000564703 CHGAP10645 457 aaKnown RBP23.6■■□□□ 1.37
RAB40C-208ENST00000564703 UGGT1Q9NYU2 1555 aa23.6■■□□□ 1.37
RAB40C-208ENST00000564703 ANKLE2Q86XL3 938 aa23.58■■□□□ 1.37
RAB40C-208ENST00000564703 ZNF142P52746 1687 aaPredicted RBP23.57■■□□□ 1.36
RAB40C-208ENST00000564703 NCKAP5LQ9HCH0 1330 aa23.55■■□□□ 1.36
RAB40C-208ENST00000564703 SYNMO15061 1565 aa23.54■■□□□ 1.36
RAB40C-208ENST00000564703 FOXD1Q16676 465 aa23.54■■□□□ 1.36
RAB40C-208ENST00000564703 EID1Q9Y6B2 187 aa23.54■■□□□ 1.36
RAB40C-208ENST00000564703 HDGFP51858 240 aaKnown RBP23.53■■□□□ 1.36
RAB40C-208ENST00000564703 PTPRTO14522 1441 aa23.51■■□□□ 1.35
RAB40C-208ENST00000564703 PLA2R1Q13018 1463 aa23.51■■□□□ 1.35
RAB40C-208ENST00000564703 TXNDC2Q86VQ3 553 aa23.5■■□□□ 1.35
RAB40C-208ENST00000564703 PIK3C2BO00750 1634 aa23.5■■□□□ 1.35
RAB40C-208ENST00000564703 SPHKAPQ2M3C7 1700 aa23.48■■□□□ 1.35
RAB40C-208ENST00000564703 UBR1Q8IWV7 1749 aa23.47■■□□□ 1.35
RAB40C-208ENST00000564703 ZNF326Q5BKZ1 582 aaKnown RBP23.46■■□□□ 1.35
RAB40C-208ENST00000564703 STRCQ7RTU9 1775 aa23.45■■□□□ 1.34
RAB40C-208ENST00000564703 TMEM2Q9UHN6 1383 aa23.45■■□□□ 1.34
RAB40C-208ENST00000564703 KDM5AP29375 1690 aaKnown RBP23.44■■□□□ 1.34
RAB40C-208ENST00000564703 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.43■■□□□ 1.34
RAB40C-208ENST00000564703 PPP1R15AO75807 674 aaPredicted RBP23.42■■□□□ 1.34
RAB40C-208ENST00000564703 BCANQ96GW7 911 aa23.42■■□□□ 1.34
RAB40C-208ENST00000564703 PCGF6Q9BYE7 350 aa23.42■■□□□ 1.34
RAB40C-208ENST00000564703 ADGRB3O60242 1522 aa23.42■■□□□ 1.34
RAB40C-208ENST00000564703 TRPM2O94759 1503 aa23.42■■□□□ 1.34
RAB40C-208ENST00000564703 LTKP29376 864 aa23.41■■□□□ 1.34
RAB40C-208ENST00000564703 CCDC144AA2RUR9 1427 aa23.41■■□□□ 1.34
RAB40C-208ENST00000564703 SLIT1O75093 1534 aa23.38■■□□□ 1.33
RAB40C-208ENST00000564703 TMEM131LA2VDJ0 1609 aa23.38■■□□□ 1.33
RAB40C-208ENST00000564703 SCAF11Q99590 1463 aaKnown RBP23.37■■□□□ 1.33
RAB40C-208ENST00000564703 ARHGAP23Q9P227 1491 aa23.37■■□□□ 1.33
RAB40C-208ENST00000564703 KIF1BO60333 1816 aa23.36■■□□□ 1.33
RAB40C-208ENST00000564703 NPHP4O75161 1426 aaPredicted RBP23.36■■□□□ 1.33
RAB40C-208ENST00000564703 RIMS2Q9UQ26 1411 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms