RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 ZNF608Q9ULD9 1512 aaPredicted RBP13.59□□□□□ -0.23
RNF40-204ENST00000563683 IQGAP2Q13576 1575 aa13.59□□□□□ -0.23
RNF40-204ENST00000563683 ARID4BQ4LE39 1312 aaPredicted RBP13.58□□□□□ -0.24
RNF40-204ENST00000563683 NUTM2DQ5VT03 806 aaPredicted RBP13.58□□□□□ -0.24
RNF40-204ENST00000563683 CCDC146Q8IYE0 955 aa13.58□□□□□ -0.24
RNF40-204ENST00000563683 SPATA31E1Q6ZUB1 1445 aa13.58□□□□□ -0.24
RNF40-204ENST00000563683 KIAA0586Q9BVV6 1533 aa13.57□□□□□ -0.24
RNF40-204ENST00000563683 CFAP53Q96M91 514 aa13.57□□□□□ -0.24
RNF40-204ENST00000563683 ANKRD30BQ9BXX2 1392 aa13.57□□□□□ -0.24
RNF40-204ENST00000563683 TCOF1Q13428 1488 aaKnown RBP13.57□□□□□ -0.24
RNF40-204ENST00000563683 RPRD2Q5VT52 1461 aaKnown RBP13.57□□□□□ -0.24
RNF40-204ENST00000563683 RRP1P56182 461 aaKnown RBP13.57□□□□□ -0.24
RNF40-204ENST00000563683 BACH2Q9BYV9 841 aa13.57□□□□□ -0.24
RNF40-204ENST00000563683 PLB1Q6P1J6 1458 aa13.57□□□□□ -0.24
RNF40-204ENST00000563683 DENND4BO75064 1496 aaPredicted RBP13.56□□□□□ -0.24
RNF40-204ENST00000563683 UPF2Q9HAU5 1272 aaKnown RBP13.56□□□□□ -0.24
RNF40-204ENST00000563683 CTTNBP2Q8WZ74 1663 aa13.56□□□□□ -0.24
RNF40-204ENST00000563683 ABCC5O15440 1437 aa13.56□□□□□ -0.24
RNF40-204ENST00000563683 POLR1AO95602 1720 aaPredicted RBP13.56□□□□□ -0.24
RNF40-204ENST00000563683 UGGT2Q9NYU1 1516 aa13.56□□□□□ -0.24
RNF40-204ENST00000563683 MORC1Q86VD1 984 aa13.56□□□□□ -0.24
RNF40-204ENST00000563683 EXOC6Q8TAG9 804 aa13.56□□□□□ -0.24
RNF40-204ENST00000563683 STK26Q9P289 416 aa13.56□□□□□ -0.24
RNF40-204ENST00000563683 AFAP1Q8N556 730 aa13.55□□□□□ -0.24
RNF40-204ENST00000563683 PNISRQ8TF01 805 aaKnown RBP13.55□□□□□ -0.24
RNF40-204ENST00000563683 KIAA1107Q9UPP5 1409 aa13.55□□□□□ -0.24
RNF40-204ENST00000563683 U2SURPO15042 1029 aaKnown RBP13.55□□□□□ -0.24
RNF40-204ENST00000563683 DHX29Q7Z478 1369 aaKnown RBP13.55□□□□□ -0.24
RNF40-204ENST00000563683 GSE1Q14687 1217 aa13.54□□□□□ -0.24
RNF40-204ENST00000563683 POGKQ9P215 609 aa13.54□□□□□ -0.24
RNF40-204ENST00000563683 C9orf84Q5VXU9 1444 aa13.53□□□□□ -0.24
RNF40-204ENST00000563683 TRAK1Q9UPV9 953 aa13.53□□□□□ -0.24
RNF40-204ENST00000563683 UBE2Q2Q8WVN8 375 aa13.52□□□□□ -0.24
RNF40-204ENST00000563683 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.52□□□□□ -0.24
RNF40-204ENST00000563683 TEX14Q8IWB6 1497 aa13.52□□□□□ -0.25
RNF40-204ENST00000563683 SRPK2P78362 688 aaKnown RBP13.52□□□□□ -0.25
RNF40-204ENST00000563683 ROCK1Q13464 1354 aa13.51□□□□□ -0.25
RNF40-204ENST00000563683 ARHGEF11O15085 1522 aa13.51□□□□□ -0.25
RNF40-204ENST00000563683 PDE3BQ13370 1112 aa13.51□□□□□ -0.25
RNF40-204ENST00000563683 GOLGA2Q08379 1002 aa13.5□□□□□ -0.25
RNF40-204ENST00000563683 MLECQ14165 292 aa13.5□□□□□ -0.25
RNF40-204ENST00000563683 CDCA7LQ96GN5 454 aa13.5□□□□□ -0.25
RNF40-204ENST00000563683 ARXQ96QS3 562 aa13.49□□□□□ -0.25
RNF40-204ENST00000563683 BRD4O60885 1362 aaPredicted RBP13.49□□□□□ -0.25
RNF40-204ENST00000563683 FTSJ3Q8IY81 847 aaKnown RBP13.49□□□□□ -0.25
RNF40-204ENST00000563683 SAMD9Q5K651 1589 aa13.49□□□□□ -0.25
RNF40-204ENST00000563683 SYNJ2O15056 1496 aa13.48□□□□□ -0.25
RNF40-204ENST00000563683 GRIN2AQ12879 1464 aa13.47□□□□□ -0.25
RNF40-204ENST00000563683 MAPK8IP3Q9UPT6 1336 aa13.47□□□□□ -0.25
RNF40-204ENST00000563683 LRPPRCP42704 1394 aaKnown RBP13.46□□□□□ -0.25
RNF40-204ENST00000563683 U2AF1L5P0DN76 240 aaPredicted RBP13.46□□□□□ -0.25
RNF40-204ENST00000563683 U2AF1Q01081 240 aaKnown RBP eCLIP13.46□□□□□ -0.25
RNF40-204ENST00000563683 KDM6BO15054 1643 aa13.46□□□□□ -0.25
RNF40-204ENST00000563683 HSP90AA1P07900 732 aaKnown RBP13.46□□□□□ -0.25
RNF40-204ENST00000563683 RRP7AQ9Y3A4 280 aaKnown RBP13.46□□□□□ -0.25
RNF40-204ENST00000563683 CAMSAP2Q08AD1 1489 aa13.46□□□□□ -0.26
RNF40-204ENST00000563683 EIF5BO60841 1220 aaKnown RBP13.45□□□□□ -0.26
RNF40-204ENST00000563683 NFKBIBQ15653 356 aa13.45□□□□□ -0.26
RNF40-204ENST00000563683 BRPF3Q9ULD4 1205 aa13.45□□□□□ -0.26
RNF40-204ENST00000563683 APAF1O14727 1248 aa13.45□□□□□ -0.26
RNF40-204ENST00000563683 CRBNQ96SW2 442 aa13.45□□□□□ -0.26
RNF40-204ENST00000563683 ARHGAP5Q13017 1502 aa13.44□□□□□ -0.26
RNF40-204ENST00000563683 ADAMTS8Q9UP79 889 aa13.44□□□□□ -0.26
RNF40-204ENST00000563683 LRRIQ1Q96JM4 1722 aa13.44□□□□□ -0.26
RNF40-204ENST00000563683 PLEKHG5O94827 1062 aa13.43□□□□□ -0.26
RNF40-204ENST00000563683 CLUAP1Q96AJ1 413 aa13.43□□□□□ -0.26
RNF40-204ENST00000563683 RSPH6AQ9H0K4 717 aa13.43□□□□□ -0.26
RNF40-204ENST00000563683 KIF21AQ7Z4S6 1674 aa13.43□□□□□ -0.26
RNF40-204ENST00000563683 EIF3AQ14152 1382 aaKnown RBP13.43□□□□□ -0.26
RNF40-204ENST00000563683 CFAP70Q5T0N1 1121 aa13.42□□□□□ -0.26
RNF40-204ENST00000563683 MAGI1Q96QZ7 1491 aaPredicted RBP13.41□□□□□ -0.26
RNF40-204ENST00000563683 MAGI3Q5TCQ9 1506 aa13.4□□□□□ -0.26
RNF40-204ENST00000563683 NUP153P49790 1475 aaKnown RBP13.4□□□□□ -0.26
RNF40-204ENST00000563683 BCL2L13Q9BXK5 485 aa13.4□□□□□ -0.26
RNF40-204ENST00000563683 GPATCH8Q9UKJ3 1502 aaKnown RBP13.39□□□□□ -0.27
RNF40-204ENST00000563683 TMEM132EQ6IEE7 984 aa13.39□□□□□ -0.27
RNF40-204ENST00000563683 FAM43AQ8N2R8 423 aa13.39□□□□□ -0.27
RNF40-204ENST00000563683 SOX12O15370 315 aa13.38□□□□□ -0.27
RNF40-204ENST00000563683 BECN1Q14457 450 aa13.38□□□□□ -0.27
RNF40-204ENST00000563683 MBD5Q9P267 1494 aa13.37□□□□□ -0.27
RNF40-204ENST00000563683 KIF14Q15058 1648 aa13.37□□□□□ -0.27
RNF40-204ENST00000563683 BCORL1Q5H9F3 1711 aa13.36□□□□□ -0.27
RNF40-204ENST00000563683 SLC4A3P48751 1232 aa13.36□□□□□ -0.27
RNF40-204ENST00000563683 KDM5CP41229 1560 aa13.36□□□□□ -0.27
RNF40-204ENST00000563683 PPP2R1AP30153 589 aa13.35□□□□□ -0.27
RNF40-204ENST00000563683 FAM161AQ3B820 660 aa13.35□□□□□ -0.27
RNF40-204ENST00000563683 CENPQQ7L2Z9 268 aaPredicted RBP13.35□□□□□ -0.27
RNF40-204ENST00000563683 CENPJQ9HC77 1338 aaPredicted RBP13.35□□□□□ -0.27
RNF40-204ENST00000563683 C14orf37Q86TY3 774 aa13.34□□□□□ -0.27
RNF40-204ENST00000563683 MYH16Q9H6N6 1097 aa13.34□□□□□ -0.27
RNF40-204ENST00000563683 COG6Q9Y2V7 657 aa13.34□□□□□ -0.27
RNF40-204ENST00000563683 INSRP06213 1382 aa13.33□□□□□ -0.28
RNF40-204ENST00000563683 RALGAPBQ86X10 1494 aa13.33□□□□□ -0.28
RNF40-204ENST00000563683 SPRYD3Q8NCJ5 442 aa13.33□□□□□ -0.28
RNF40-204ENST00000563683 DNMT1P26358 1616 aaKnown RBP13.33□□□□□ -0.28
RNF40-204ENST00000563683 UHRF1BP1Q6BDS2 1440 aa13.33□□□□□ -0.28
RNF40-204ENST00000563683 ZBTB7CA1YPR0 619 aa13.32□□□□□ -0.28
RNF40-204ENST00000563683 HDGFL2Q7Z4V5 671 aaPredicted RBP13.32□□□□□ -0.28
RNF40-204ENST00000563683 SCAPERQ9BY12 1400 aa13.32□□□□□ -0.28
RNF40-204ENST00000563683 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 189.6 ms