RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 PPRC1Q5VV67 1664 aaKnown RBP25.96■■□□□ 1.75
COMMD4-208ENST00000563220 IQGAP3Q86VI3 1631 aa25.95■■□□□ 1.74
COMMD4-208ENST00000563220 L3MBTL2Q969R5 705 aa25.95■■□□□ 1.74
COMMD4-208ENST00000563220 HECW2Q9P2P5 1572 aa25.94■■□□□ 1.74
COMMD4-208ENST00000563220 A2MP01023 1474 aa25.93■■□□□ 1.74
COMMD4-208ENST00000563220 TEX14Q8IWB6 1497 aa25.93■■□□□ 1.74
COMMD4-208ENST00000563220 TSPOAP1O95153 1857 aa25.93■■□□□ 1.74
COMMD4-208ENST00000563220 RICTORQ6R327 1708 aa25.91■■□□□ 1.74
COMMD4-208ENST00000563220 KIF13AQ9H1H9 1805 aa25.91■■□□□ 1.74
COMMD4-208ENST00000563220 DEPDC5O75140 1603 aa25.88■■□□□ 1.73
COMMD4-208ENST00000563220 EIF2AK4Q9P2K8 1649 aaKnown RBP25.88■■□□□ 1.73
COMMD4-208ENST00000563220 FRMPD1Q5SYB0 1578 aa25.87■■□□□ 1.73
COMMD4-208ENST00000563220 ABCA6Q8N139 1617 aa25.87■■□□□ 1.73
COMMD4-208ENST00000563220 PLA2R1Q13018 1463 aa25.86■■□□□ 1.73
COMMD4-208ENST00000563220 YEATS2Q9ULM3 1422 aa25.85■■□□□ 1.73
COMMD4-208ENST00000563220 VWDEQ8N2E2 1590 aa25.83■■□□□ 1.73
COMMD4-208ENST00000563220 KANK1Q14678 1352 aa25.83■■□□□ 1.73
COMMD4-208ENST00000563220 MROH1Q8NDA8 1641 aa25.83■■□□□ 1.73
COMMD4-208ENST00000563220 DIP2CQ9Y2E4 1556 aa25.82■■□□□ 1.72
COMMD4-208ENST00000563220 PRDM15P57071 1507 aaPredicted RBP25.81■■□□□ 1.72
COMMD4-208ENST00000563220 COL17A1Q9UMD9 1497 aaPredicted RBP25.79■■□□□ 1.72
COMMD4-208ENST00000563220 ZMYM4Q5VZL5 1548 aa25.79■■□□□ 1.72
COMMD4-208ENST00000563220 DNAJC5Q9H3Z4 198 aa25.79■■□□□ 1.72
COMMD4-208ENST00000563220 DIEXFQ68CQ4 756 aaKnown RBP25.78■■□□□ 1.72
COMMD4-208ENST00000563220 ATP10AO60312 1499 aa25.77■■□□□ 1.72
COMMD4-208ENST00000563220 CCDC144AA2RUR9 1427 aa25.77■■□□□ 1.72
COMMD4-208ENST00000563220 NBPF8Q3BBV2 869 aa25.77■■□□□ 1.72
COMMD4-208ENST00000563220 GGT6Q6P531 493 aa25.77■■□□□ 1.72
COMMD4-208ENST00000563220 RNF17Q9BXT8 1623 aaKnown RBP25.75■■□□□ 1.71
COMMD4-208ENST00000563220 E9PCH4 1651 aa25.74■■□□□ 1.71
COMMD4-208ENST00000563220 TET3O43151 1660 aa25.73■■□□□ 1.71
COMMD4-208ENST00000563220 BCORL1Q5H9F3 1711 aa25.72■■□□□ 1.71
COMMD4-208ENST00000563220 PTPRTO14522 1441 aa25.71■■□□□ 1.71
COMMD4-208ENST00000563220 LMTK2Q8IWU2 1503 aa25.7■■□□□ 1.7
COMMD4-208ENST00000563220 HIRIP3Q9BW71 556 aaPredicted RBP25.67■■□□□ 1.7
COMMD4-208ENST00000563220 WASHC2CQ9Y4E1 1318 aa25.66■■□□□ 1.7
COMMD4-208ENST00000563220 RGL3Q3MIN7 710 aa25.65■■□□□ 1.7
COMMD4-208ENST00000563220 DCAF11Q8TEB1 546 aa25.65■■□□□ 1.7
COMMD4-208ENST00000563220 EFCAB6Q5THR3 1501 aa25.65■■□□□ 1.7
COMMD4-208ENST00000563220 TRHP20396 242 aaPredicted RBP25.64■■□□□ 1.69
COMMD4-208ENST00000563220 KDM2AQ9Y2K7 1162 aa25.64■■□□□ 1.69
COMMD4-208ENST00000563220 TRPM2O94759 1503 aa25.63■■□□□ 1.69
COMMD4-208ENST00000563220 ABCC3O15438 1527 aa25.62■■□□□ 1.69
COMMD4-208ENST00000563220 ZNF326Q5BKZ1 582 aaKnown RBP25.62■■□□□ 1.69
COMMD4-208ENST00000563220 UHRF1BP1Q6BDS2 1440 aa25.61■■□□□ 1.69
COMMD4-208ENST00000563220 CEP152O94986 1710 aa25.61■■□□□ 1.69
COMMD4-208ENST00000563220 SPHKAPQ2M3C7 1700 aa25.59■■□□□ 1.69
COMMD4-208ENST00000563220 NPATQ14207 1427 aa25.59■■□□□ 1.69
COMMD4-208ENST00000563220 REREQ9P2R6 1566 aa25.58■■□□□ 1.69
COMMD4-208ENST00000563220 SPATA31E1Q6ZUB1 1445 aa25.58■■□□□ 1.69
COMMD4-208ENST00000563220 HSPA5P11021 654 aaKnown RBP25.57■■□□□ 1.68
COMMD4-208ENST00000563220 CLTCL1P53675 1640 aa25.55■■□□□ 1.68
COMMD4-208ENST00000563220 AGLP35573 1532 aa25.55■■□□□ 1.68
COMMD4-208ENST00000563220 EIF4G2P78344 907 aaKnown RBP eCLIP25.55■■□□□ 1.68
COMMD4-208ENST00000563220 ARHGEF40Q8TER5 1519 aa25.53■■□□□ 1.68
COMMD4-208ENST00000563220 UGGT1Q9NYU2 1555 aa25.51■■□□□ 1.67
COMMD4-208ENST00000563220 SIGLEC1Q9BZZ2 1709 aa25.5■■□□□ 1.67
COMMD4-208ENST00000563220 PRAG1Q86YV5 1406 aa25.49■■□□□ 1.67
COMMD4-208ENST00000563220 CAMSAP1Q5T5Y3 1602 aa25.49■■□□□ 1.67
COMMD4-208ENST00000563220 ARHGAP31Q2M1Z3 1444 aa25.49■■□□□ 1.67
COMMD4-208ENST00000563220 RALGAPBQ86X10 1494 aa25.48■■□□□ 1.67
COMMD4-208ENST00000563220 PPP6R1Q9UPN7 881 aa25.47■■□□□ 1.67
COMMD4-208ENST00000563220 NOS1P29475 1434 aa25.46■■□□□ 1.67
COMMD4-208ENST00000563220 CNTLNQ9NXG0 1405 aa25.46■■□□□ 1.67
COMMD4-208ENST00000563220 ZC3H13Q5T200 1668 aaKnown RBP25.46■■□□□ 1.67
COMMD4-208ENST00000563220 MLECQ14165 292 aa25.45■■□□□ 1.67
COMMD4-208ENST00000563220 DDX10Q13206 875 aaKnown RBP25.42■■□□□ 1.66
COMMD4-208ENST00000563220 CARD11Q9BXL7 1154 aa25.42■■□□□ 1.66
COMMD4-208ENST00000563220 CFAP65Q6ZU64 1925 aaKnown RBP25.42■■□□□ 1.66
COMMD4-208ENST00000563220 MIER1Q8N108 512 aa25.41■■□□□ 1.66
COMMD4-208ENST00000563220 NEURL4Q96JN8 1562 aa25.41■■□□□ 1.66
COMMD4-208ENST00000563220 NBPF1Q3BBV0 1214 aa25.4■■□□□ 1.66
COMMD4-208ENST00000563220 USP47Q96K76 1375 aa25.39■■□□□ 1.66
COMMD4-208ENST00000563220 STAC3Q96MF2 364 aa25.39■■□□□ 1.66
COMMD4-208ENST00000563220 ROCK2O75116 1388 aaKnown RBP25.39■■□□□ 1.65
COMMD4-208ENST00000563220 CHGAP10645 457 aaKnown RBP25.37■■□□□ 1.65
COMMD4-208ENST00000563220 FBXO31Q5XUX0 539 aaPredicted RBP25.37■■□□□ 1.65
COMMD4-208ENST00000563220 C11orf95C9JLR9 678 aaPredicted RBP25.36■■□□□ 1.65
COMMD4-208ENST00000563220 SYNMO15061 1565 aa25.36■■□□□ 1.65
COMMD4-208ENST00000563220 ARID4BQ4LE39 1312 aaPredicted RBP25.36■■□□□ 1.65
COMMD4-208ENST00000563220 TRPM1Q7Z4N2 1603 aa25.35■■□□□ 1.65
COMMD4-208ENST00000563220 WASHC2AQ641Q2 1341 aa25.35■■□□□ 1.65
COMMD4-208ENST00000563220 IDI1Q13907 227 aa25.34■■□□□ 1.65
COMMD4-208ENST00000563220 ADGRB3O60242 1522 aa25.34■■□□□ 1.65
COMMD4-208ENST00000563220 KIF1BO60333 1816 aa25.34■■□□□ 1.65
COMMD4-208ENST00000563220 GPRASP1Q5JY77 1395 aa25.34■■□□□ 1.65
COMMD4-208ENST00000563220 SLC52A1Q9NWF4 448 aa25.32■■□□□ 1.64
COMMD4-208ENST00000563220 MROH2AA6NES4 1674 aa25.31■■□□□ 1.64
COMMD4-208ENST00000563220 PIK3C2BO00750 1634 aa25.31■■□□□ 1.64
COMMD4-208ENST00000563220 CLTCQ00610 1675 aaKnown RBP25.3■■□□□ 1.64
COMMD4-208ENST00000563220 MADDQ8WXG6 1647 aa25.3■■□□□ 1.64
COMMD4-208ENST00000563220 ADGRF5Q8IZF2 1346 aa25.29■■□□□ 1.64
COMMD4-208ENST00000563220 ERVK-7P63135 1459 aa25.29■■□□□ 1.64
COMMD4-208ENST00000563220 PREX1Q8TCU6 1659 aa25.29■■□□□ 1.64
COMMD4-208ENST00000563220 ST20-MTHFSA0A0A6YYL1 179 aa25.28■■□□□ 1.64
COMMD4-208ENST00000563220 ESF1Q9H501 851 aaKnown RBP25.28■■□□□ 1.64
COMMD4-208ENST00000563220 MYOM2P54296 1465 aa25.27■■□□□ 1.64
COMMD4-208ENST00000563220 ZMYM3Q14202 1370 aa25.26■■□□□ 1.63
COMMD4-208ENST00000563220 CCDC7Q96M83 1385 aa25.26■■□□□ 1.63
COMMD4-208ENST00000563220 RPGRIP1LQ68CZ1 1315 aa25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms