RNA–Protein interactions for RNA: ENST00000561623.5

GTF3C1-202, Transcript of general transcription factor IIIC subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GTF3C1, Length 7,015 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-202ENST00000561623 FOXD4L3Q6VB84 417 aaPredicted RBP12.73□□□□□ -0.37
GTF3C1-202ENST00000561623 CARMIL1Q5VZK9 1371 aa12.72□□□□□ -0.37
GTF3C1-202ENST00000561623 ZBED9Q6R2W3 1325 aa12.72□□□□□ -0.37
GTF3C1-202ENST00000561623 HSP90B1P14625 803 aaKnown RBP12.72□□□□□ -0.37
GTF3C1-202ENST00000561623 BCL2L13Q9BXK5 485 aa12.71□□□□□ -0.38
GTF3C1-202ENST00000561623 CECR2Q9BXF3 1484 aa12.71□□□□□ -0.38
GTF3C1-202ENST00000561623 RTF1Q92541 710 aaKnown RBP12.71□□□□□ -0.38
GTF3C1-202ENST00000561623 STK26Q9P289 416 aa12.71□□□□□ -0.38
GTF3C1-202ENST00000561623 PRKRIP1Q9H875 184 aaPredicted RBP12.7□□□□□ -0.38
GTF3C1-202ENST00000561623 RRP7AQ9Y3A4 280 aaKnown RBP12.7□□□□□ -0.38
GTF3C1-202ENST00000561623 IL27Q8NEV9 243 aa12.7□□□□□ -0.38
GTF3C1-202ENST00000561623 EVA1CP58658 441 aa12.69□□□□□ -0.38
GTF3C1-202ENST00000561623 HTATSF1O43719 755 aaKnown RBP12.69□□□□□ -0.38
GTF3C1-202ENST00000561623 ZNF771Q7L3S4 317 aaPredicted RBP12.69□□□□□ -0.38
GTF3C1-202ENST00000561623 CUX2O14529 1486 aa12.69□□□□□ -0.38
GTF3C1-202ENST00000561623 PHF14O94880 888 aa12.69□□□□□ -0.38
GTF3C1-202ENST00000561623 PIP4K2BP78356 416 aa12.69□□□□□ -0.38
GTF3C1-202ENST00000561623 NFKBIBQ15653 356 aa12.69□□□□□ -0.38
GTF3C1-202ENST00000561623 ST18O60284 1047 aa12.68□□□□□ -0.38
GTF3C1-202ENST00000561623 BRPF3Q9ULD4 1205 aa12.68□□□□□ -0.38
GTF3C1-202ENST00000561623 MYBBP1AQ9BQG0 1328 aaKnown RBP12.68□□□□□ -0.38
GTF3C1-202ENST00000561623 TPM4P67936 248 aa12.68□□□□□ -0.38
GTF3C1-202ENST00000561623 GOLGA6L1Q8N7Z2 621 aa12.68□□□□□ -0.38
GTF3C1-202ENST00000561623 CWC22Q9HCG8 908 aaKnown RBP12.68□□□□□ -0.38
GTF3C1-202ENST00000561623 GTF2E1P29083 439 aaPredicted RBP12.68□□□□□ -0.38
GTF3C1-202ENST00000561623 FMN1Q68DA7 1419 aa12.67□□□□□ -0.38
GTF3C1-202ENST00000561623 KIF15Q9NS87 1388 aa12.67□□□□□ -0.38
GTF3C1-202ENST00000561623 SKOR2Q2VWA4 1001 aaPredicted RBP12.67□□□□□ -0.38
GTF3C1-202ENST00000561623 NOC3LQ8WTT2 800 aaKnown RBP12.67□□□□□ -0.38
GTF3C1-202ENST00000561623 NUP155O75694 1391 aa12.67□□□□□ -0.38
GTF3C1-202ENST00000561623 COG6Q9Y2V7 657 aa12.66□□□□□ -0.38
GTF3C1-202ENST00000561623 EID1Q9Y6B2 187 aa12.66□□□□□ -0.38
GTF3C1-202ENST00000561623 CSPP1Q1MSJ5 1256 aa12.66□□□□□ -0.38
GTF3C1-202ENST00000561623 SLC4A10Q6U841 1118 aa12.66□□□□□ -0.38
GTF3C1-202ENST00000561623 ZNF592Q92610 1267 aa12.64□□□□□ -0.39
GTF3C1-202ENST00000561623 ANKRD45Q5TZF3 282 aa12.64□□□□□ -0.39
GTF3C1-202ENST00000561623 FAM43AQ8N2R8 423 aa12.64□□□□□ -0.39
GTF3C1-202ENST00000561623 KANK1Q14678 1352 aa12.64□□□□□ -0.39
GTF3C1-202ENST00000561623 HDGFL2Q7Z4V5 671 aaPredicted RBP12.64□□□□□ -0.39
GTF3C1-202ENST00000561623 CREBRFQ8IUR6 639 aa12.64□□□□□ -0.39
GTF3C1-202ENST00000561623 ST20-MTHFSA0A0A6YYL1 179 aa12.62□□□□□ -0.39
GTF3C1-202ENST00000561623 PANK3Q9H999 370 aa12.62□□□□□ -0.39
GTF3C1-202ENST00000561623 HMMRO75330 724 aa12.62□□□□□ -0.39
GTF3C1-202ENST00000561623 KIF16BQ96L93 1317 aa12.61□□□□□ -0.39
GTF3C1-202ENST00000561623 CCAR2Q8N163 923 aaKnown RBP12.61□□□□□ -0.39
GTF3C1-202ENST00000561623 PHLDB1Q86UU1 1377 aa12.61□□□□□ -0.39
GTF3C1-202ENST00000561623 CHMP5Q9NZZ3 219 aa12.61□□□□□ -0.39
GTF3C1-202ENST00000561623 CNKSR2Q8WXI2 1034 aa12.6□□□□□ -0.39
GTF3C1-202ENST00000561623 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.6□□□□□ -0.39
GTF3C1-202ENST00000561623 BAZ1AQ9NRL2 1556 aaPredicted RBP12.6□□□□□ -0.39
GTF3C1-202ENST00000561623 NUTM2DQ5VT03 806 aaPredicted RBP12.6□□□□□ -0.39
GTF3C1-202ENST00000561623 RILPL2Q969X0 211 aa12.6□□□□□ -0.39
GTF3C1-202ENST00000561623 STK31Q9BXU1 1019 aa12.6□□□□□ -0.39
GTF3C1-202ENST00000561623 BCL11BQ9C0K0 894 aaPredicted RBP12.6□□□□□ -0.39
GTF3C1-202ENST00000561623 ELL2O00472 640 aaPredicted RBP12.59□□□□□ -0.39
GTF3C1-202ENST00000561623 PKNOX2Q96KN3 472 aa12.59□□□□□ -0.39
GTF3C1-202ENST00000561623 A0A0U1RQG5 324 aaPredicted RBP12.59□□□□□ -0.39
GTF3C1-202ENST00000561623 R3HCC1Q9Y3T6 440 aaKnown RBP12.59□□□□□ -0.39
GTF3C1-202ENST00000561623 PDE4CQ08493 712 aa12.59□□□□□ -0.39
GTF3C1-202ENST00000561623 FBXO3Q9UK99 471 aa12.58□□□□□ -0.39
GTF3C1-202ENST00000561623 NACADO15069 1562 aa12.58□□□□□ -0.4
GTF3C1-202ENST00000561623 GPATCH3Q96I76 525 aa12.58□□□□□ -0.4
GTF3C1-202ENST00000561623 CHMP3Q9Y3E7 222 aa12.57□□□□□ -0.4
GTF3C1-202ENST00000561623 GOLGA6L19H0YKK7 550 aa12.57□□□□□ -0.4
GTF3C1-202ENST00000561623 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.57□□□□□ -0.4
GTF3C1-202ENST00000561623 E9PSI1 815 aa12.57□□□□□ -0.4
GTF3C1-202ENST00000561623 ZKSCAN2Q63HK3 967 aa12.57□□□□□ -0.4
GTF3C1-202ENST00000561623 SYTL4Q96C24 671 aaPredicted RBP12.57□□□□□ -0.4
GTF3C1-202ENST00000561623 MCTP1Q6DN14 999 aa12.57□□□□□ -0.4
GTF3C1-202ENST00000561623 CGNL1Q0VF96 1302 aa12.56□□□□□ -0.4
GTF3C1-202ENST00000561623 EIF3AQ14152 1382 aaKnown RBP12.56□□□□□ -0.4
GTF3C1-202ENST00000561623 NUTM2FA1L443 756 aa12.56□□□□□ -0.4
GTF3C1-202ENST00000561623 SF3A1Q15459 793 aaKnown RBP12.56□□□□□ -0.4
GTF3C1-202ENST00000561623 NUTM2BA6NNL0 878 aaPredicted RBP12.56□□□□□ -0.4
GTF3C1-202ENST00000561623 NUTM2EB1AL46 878 aaPredicted RBP12.56□□□□□ -0.4
GTF3C1-202ENST00000561623 FRAT2O75474 233 aaPredicted RBP12.56□□□□□ -0.4
GTF3C1-202ENST00000561623 NUTM2AQ8IVF1 878 aaPredicted RBP12.56□□□□□ -0.4
GTF3C1-202ENST00000561623 APAF1O14727 1248 aa12.56□□□□□ -0.4
GTF3C1-202ENST00000561623 PRKCSHP14314 528 aaPredicted RBP12.56□□□□□ -0.4
GTF3C1-202ENST00000561623 ANKRD30AQ9BXX3 1397 aa12.55□□□□□ -0.4
GTF3C1-202ENST00000561623 BECN2A8MW95 431 aa12.55□□□□□ -0.4
GTF3C1-202ENST00000561623 OSCARQ8IYS5 282 aa12.55□□□□□ -0.4
GTF3C1-202ENST00000561623 H3BQV1 296 aa12.55□□□□□ -0.4
GTF3C1-202ENST00000561623 TPM3P06753 285 aa12.55□□□□□ -0.4
GTF3C1-202ENST00000561623 IFFO2Q5TF58 517 aa12.55□□□□□ -0.4
GTF3C1-202ENST00000561623 PAXIP1Q6ZW49 1069 aaPredicted RBP12.55□□□□□ -0.4
GTF3C1-202ENST00000561623 SPAG9O60271 1321 aaKnown RBP12.54□□□□□ -0.4
GTF3C1-202ENST00000561623 MROH2BQ7Z745 1585 aa12.54□□□□□ -0.4
GTF3C1-202ENST00000561623 USP47Q96K76 1375 aa12.54□□□□□ -0.4
GTF3C1-202ENST00000561623 RBM10P98175 930 aaKnown RBP12.53□□□□□ -0.4
GTF3C1-202ENST00000561623 SETQ01105 290 aaPredicted RBP12.53□□□□□ -0.4
GTF3C1-202ENST00000561623 RAPGEF2Q9Y4G8 1499 aa12.53□□□□□ -0.4
GTF3C1-202ENST00000561623 GORABQ5T7V8 394 aa12.53□□□□□ -0.4
GTF3C1-202ENST00000561623 FHOD3Q2V2M9 1422 aa12.53□□□□□ -0.4
GTF3C1-202ENST00000561623 MRE11P49959 708 aa12.53□□□□□ -0.4
GTF3C1-202ENST00000561623 RASSF8Q8NHQ8 419 aa12.53□□□□□ -0.4
GTF3C1-202ENST00000561623 C22orf23Q9BZE7 217 aa12.52□□□□□ -0.4
GTF3C1-202ENST00000561623 NASPP49321 788 aaPredicted RBP12.52□□□□□ -0.4
GTF3C1-202ENST00000561623 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.52□□□□□ -0.41
GTF3C1-202ENST00000561623 PES1O00541 588 aaKnown RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms