RNA–Protein interactions for RNA: ENST00000561431.1

LRRC28-222, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 754 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-222ENST00000561431 PDE4AP27815 886 aa9.1□□□□□ -0.95
LRRC28-222ENST00000561431 PROX2Q3B8N5 592 aa9.1□□□□□ -0.95
LRRC28-222ENST00000561431 ANKK1Q8NFD2 765 aa9.1□□□□□ -0.95
LRRC28-222ENST00000561431 BCAMP50895 628 aa9.09□□□□□ -0.95
LRRC28-222ENST00000561431 TSHZ2Q9NRE2 1034 aa9.09□□□□□ -0.95
LRRC28-222ENST00000561431 RYDENQ9NUL5 291 aaKnown RBP9.09□□□□□ -0.95
LRRC28-222ENST00000561431 COL9A1P20849 921 aa9.08□□□□□ -0.96
LRRC28-222ENST00000561431 Q6ZNB5 142 aa9.07□□□□□ -0.96
LRRC28-222ENST00000561431 PCDHGA10Q9Y5H3 936 aa9.07□□□□□ -0.96
LRRC28-222ENST00000561431 SOWAHBA6NEL2 793 aa9.06□□□□□ -0.96
LRRC28-222ENST00000561431 MAP3K9P80192 1104 aa9.05□□□□□ -0.96
LRRC28-222ENST00000561431 LAPTM4BQ86VI4 370 aa9.05□□□□□ -0.96
LRRC28-222ENST00000561431 GTPBP6O43824 516 aaPredicted RBP9.04□□□□□ -0.96
LRRC28-222ENST00000561431 LARP6Q9BRS8 491 aaKnown RBP9.04□□□□□ -0.96
LRRC28-222ENST00000561431 NYAP1Q6ZVC0 841 aa9.03□□□□□ -0.96
LRRC28-222ENST00000561431 DDX27Q96GQ7 796 aaKnown RBP9.03□□□□□ -0.96
LRRC28-222ENST00000561431 ZFRQ96KR1 1074 aaKnown RBP9.03□□□□□ -0.96
LRRC28-222ENST00000561431 EMILIN3Q9NT22 766 aa9.03□□□□□ -0.96
LRRC28-222ENST00000561431 WBP1LQ9NX94 342 aa9.03□□□□□ -0.96
LRRC28-222ENST00000561431 MFSD10Q14728 455 aa9.02□□□□□ -0.97
LRRC28-222ENST00000561431 KIAA1468Q9P260 1216 aa9.02□□□□□ -0.97
LRRC28-222ENST00000561431 KCNC4Q03721 635 aa9.01□□□□□ -0.97
LRRC28-222ENST00000561431 KDM2AQ9Y2K7 1162 aa9.01□□□□□ -0.97
LRRC28-222ENST00000561431 TYW1BQ6NUM6 668 aa9□□□□□ -0.97
LRRC28-222ENST00000561431 FBXW7Q969H0 707 aa9□□□□□ -0.97
LRRC28-222ENST00000561431 LCE2BO14633 110 aa8.99□□□□□ -0.97
LRRC28-222ENST00000561431 PHF14O94880 888 aa8.98□□□□□ -0.97
LRRC28-222ENST00000561431 SEPT9Q9UHD8 586 aaPredicted RBP8.98□□□□□ -0.97
LRRC28-222ENST00000561431 ONECUT3O60422 494 aaPredicted RBP8.97□□□□□ -0.97
LRRC28-222ENST00000561431 BCANQ96GW7 911 aa8.97□□□□□ -0.97
LRRC28-222ENST00000561431 LAPTM4AQ15012 233 aa8.95□□□□□ -0.98
LRRC28-222ENST00000561431 FAM98CQ17RN3 349 aaKnown RBP8.94□□□□□ -0.98
LRRC28-222ENST00000561431 C6orf132Q5T0Z8 1188 aa8.94□□□□□ -0.98
LRRC28-222ENST00000561431 TRIM6-TRIM34B2RNG4 842 aa8.93□□□□□ -0.98
LRRC28-222ENST00000561431 TSR3Q9UJK0 312 aaKnown RBP8.93□□□□□ -0.98
LRRC28-222ENST00000561431 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.92□□□□□ -0.98
LRRC28-222ENST00000561431 HPS5Q9UPZ3 1129 aa8.92□□□□□ -0.98
LRRC28-222ENST00000561431 GFRA3O60609 400 aa8.91□□□□□ -0.98
LRRC28-222ENST00000561431 TRAF7Q6Q0C0 670 aa8.91□□□□□ -0.98
LRRC28-222ENST00000561431 EPAS1Q99814 870 aa8.91□□□□□ -0.98
LRRC28-222ENST00000561431 LRCH3Q96II8 777 aa8.9□□□□□ -0.98
LRRC28-222ENST00000561431 CADPS2Q86UW7 1296 aa8.87□□□□□ -0.99
LRRC28-222ENST00000561431 WDR70Q9NW82 654 aa8.87□□□□□ -0.99
LRRC28-222ENST00000561431 NBR1Q14596 966 aa8.86□□□□□ -0.99
LRRC28-222ENST00000561431 RBM33Q96EV2 1170 aaKnown RBP8.86□□□□□ -0.99
LRRC28-222ENST00000561431 CAMK2BQ13554 666 aa8.85□□□□□ -0.99
LRRC28-222ENST00000561431 TJAP1Q5JTD0 557 aa8.85□□□□□ -0.99
LRRC28-222ENST00000561431 NRG2O14511 850 aaPredicted RBP8.84□□□□□ -0.99
LRRC28-222ENST00000561431 DPYSL4O14531 572 aa8.84□□□□□ -0.99
LRRC28-222ENST00000561431 PRKD2Q9BZL6 878 aa8.84□□□□□ -0.99
LRRC28-222ENST00000561431 TSKSQ9UJT2 592 aa8.84□□□□□ -0.99
LRRC28-222ENST00000561431 DDX12PQ92771 950 aa8.83□□□□□ -1
LRRC28-222ENST00000561431 PPP4CP60510 307 aa8.82□□□□□ -1
LRRC28-222ENST00000561431 PACS2Q86VP3 889 aa8.81□□□□□ -1
LRRC28-222ENST00000561431 TSR1Q2NL82 804 aaKnown RBP8.8□□□□□ -1
LRRC28-222ENST00000561431 PPP1R18Q6NYC8 613 aa8.8□□□□□ -1
LRRC28-222ENST00000561431 EN1Q05925 392 aaPredicted RBP8.79□□□□□ -1
LRRC28-222ENST00000561431 SAMD7Q7Z3H4 446 aa8.79□□□□□ -1
LRRC28-222ENST00000561431 MTRQ99707 1265 aa8.79□□□□□ -1
LRRC28-222ENST00000561431 V9GY48 417 aaPredicted RBP8.79□□□□□ -1
LRRC28-222ENST00000561431 SMAPO00193 183 aa8.77□□□□□ -1.01
LRRC28-222ENST00000561431 MAP3K7O43318 606 aa8.77□□□□□ -1.01
LRRC28-222ENST00000561431 IL21Q9HBE4 155 aa8.77□□□□□ -1.01
LRRC28-222ENST00000561431 P3H3Q8IVL6 736 aa8.76□□□□□ -1.01
LRRC28-222ENST00000561431 FAM198AQ9UFP1 575 aa8.76□□□□□ -1.01
LRRC28-222ENST00000561431 ZNF516Q92618 1163 aa8.75□□□□□ -1.01
LRRC28-222ENST00000561431 C3orf80F5H4A9 247 aa8.74□□□□□ -1.01
LRRC28-222ENST00000561431 CDCA7LQ96GN5 454 aa8.74□□□□□ -1.01
LRRC28-222ENST00000561431 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.74□□□□□ -1.01
LRRC28-222ENST00000561431 ZNF787Q6DD87 383 aa8.73□□□□□ -1.01
LRRC28-222ENST00000561431 PDZRN3Q9UPQ7 1066 aa8.73□□□□□ -1.01
LRRC28-222ENST00000561431 PRSS12P56730 875 aa8.72□□□□□ -1.01
LRRC28-222ENST00000561431 PDIA6Q15084 440 aa8.71□□□□□ -1.02
LRRC28-222ENST00000561431 APLP1P51693 650 aa8.7□□□□□ -1.02
LRRC28-222ENST00000561431 NKX2-3Q8TAU0 364 aa8.7□□□□□ -1.02
LRRC28-222ENST00000561431 TATDN2Q93075 761 aa8.7□□□□□ -1.02
LRRC28-222ENST00000561431 PRIM1P49642 420 aaKnown RBP8.69□□□□□ -1.02
LRRC28-222ENST00000561431 ZNF775Q96BV0 537 aaPredicted RBP8.69□□□□□ -1.02
LRRC28-222ENST00000561431 NBPF26B4DH59 902 aa8.68□□□□□ -1.02
LRRC28-222ENST00000561431 PNMA3Q9UL41 463 aa8.68□□□□□ -1.02
LRRC28-222ENST00000561431 TPRNQ4KMQ1 711 aa8.67□□□□□ -1.02
LRRC28-222ENST00000561431 CERKQ8TCT0 537 aa8.67□□□□□ -1.02
LRRC28-222ENST00000561431 RNF40O75150 1001 aa8.66□□□□□ -1.02
LRRC28-222ENST00000561431 E2F4Q16254 413 aa8.66□□□□□ -1.02
LRRC28-222ENST00000561431 KCNV2Q8TDN2 545 aa8.66□□□□□ -1.02
LRRC28-222ENST00000561431 SPDYE16A6NNV3 312 aaPredicted RBP8.65□□□□□ -1.02
LRRC28-222ENST00000561431 PRKCSHP14314 528 aaPredicted RBP8.65□□□□□ -1.02
LRRC28-222ENST00000561431 NUDT18Q6ZVK8 323 aa8.64□□□□□ -1.03
LRRC28-222ENST00000561431 COPS2P61201 443 aa8.63□□□□□ -1.03
LRRC28-222ENST00000561431 TRIM67Q6ZTA4 783 aa8.63□□□□□ -1.03
LRRC28-222ENST00000561431 TULP1O00294 542 aaPredicted RBP8.62□□□□□ -1.03
LRRC28-222ENST00000561431 GGCXP38435 758 aa8.62□□□□□ -1.03
LRRC28-222ENST00000561431 HDGFP51858 240 aaKnown RBP8.62□□□□□ -1.03
LRRC28-222ENST00000561431 TMUB1Q9BVT8 246 aa8.62□□□□□ -1.03
LRRC28-222ENST00000561431 CDHR5Q9HBB8 845 aa8.61□□□□□ -1.03
LRRC28-222ENST00000561431 GRXCR2A6NFK2 248 aa8.6□□□□□ -1.03
LRRC28-222ENST00000561431 RBM27Q9P2N5 1060 aaKnown RBP8.6□□□□□ -1.03
LRRC28-222ENST00000561431 SWT1Q5T5J6 900 aaKnown RBP8.59□□□□□ -1.03
LRRC28-222ENST00000561431 ARHGEF1Q92888 912 aaKnown RBP8.59□□□□□ -1.03
LRRC28-222ENST00000561431 EMID1Q96A84 441 aaPredicted RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms