RNA–Protein interactions for RNA: ENST00000561071.5

MARK3-223, Transcript of microtubule affinity regulating kinase 3, human

TSL 3

Gene MARK3, Length 746 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MARK3-223	ENST00000561071	PDS5B	Q9NTI5	1447 aa		13.14	□□□□□ -0.31
MARK3-223	ENST00000561071	OSBP	P22059	807 aa		13.14	□□□□□ -0.31
MARK3-223	ENST00000561071	PRIM1	P49642	420 aa	Known RBP	13.13	□□□□□ -0.31
MARK3-223	ENST00000561071	HOXB1	P14653	301 aa	Predicted RBP	13.12	□□□□□ -0.31
MARK3-223	ENST00000561071	PCDHGA10	Q9Y5H3	936 aa		13.11	□□□□□ -0.31
MARK3-223	ENST00000561071	LHX6	Q9UPM6	363 aa		13.1	□□□□□ -0.31
MARK3-223	ENST00000561071	PHF14	O94880	888 aa		13.09	□□□□□ -0.31
MARK3-223	ENST00000561071	ST18	O60284	1047 aa		13.07	□□□□□ -0.32
MARK3-223	ENST00000561071	FOSB	P53539	338 aa		13.07	□□□□□ -0.32
MARK3-223	ENST00000561071	ZNF454	Q8N9F8	522 aa		13.07	□□□□□ -0.32
MARK3-223	ENST00000561071	ZC3H15	Q8WU90	426 aa	Known RBP	13.07	□□□□□ -0.32
MARK3-223	ENST00000561071	JPH4	Q96JJ6	628 aa		13.07	□□□□□ -0.32
MARK3-223	ENST00000561071	GPIHBP1	Q8IV16	184 aa		13.05	□□□□□ -0.32
MARK3-223	ENST00000561071	RBM33	Q96EV2	1170 aa	Known RBP	13.05	□□□□□ -0.32
MARK3-223	ENST00000561071	EPAS1	Q99814	870 aa		13.05	□□□□□ -0.32
MARK3-223	ENST00000561071	TYW1B	Q6NUM6	668 aa		13.04	□□□□□ -0.32
MARK3-223	ENST00000561071	MRC2	Q9UBG0	1479 aa		13.04	□□□□□ -0.32
MARK3-223	ENST00000561071	NUTM2F	A1L443	756 aa		13.03	□□□□□ -0.32
MARK3-223	ENST00000561071	EN1	Q05925	392 aa	Predicted RBP	13.03	□□□□□ -0.32
MARK3-223	ENST00000561071	FAM163A	Q96GL9	167 aa	Predicted RBP	13.03	□□□□□ -0.32
MARK3-223	ENST00000561071	TOP2A	P11388	1531 aa	Known RBP	13.03	□□□□□ -0.32
MARK3-223	ENST00000561071	FANCD2	Q9BXW9	1451 aa		13	□□□□□ -0.33
MARK3-223	ENST00000561071	GPR37	O15354	613 aa		13	□□□□□ -0.33
MARK3-223	ENST00000561071	MAP3K7	O43318	606 aa		13	□□□□□ -0.33
MARK3-223	ENST00000561071	ZDHHC16	Q969W1	377 aa		13	□□□□□ -0.33
MARK3-223	ENST00000561071	MARVELD3	Q96A59	401 aa		13	□□□□□ -0.33
MARK3-223	ENST00000561071	CDHR5	Q9HBB8	845 aa		13	□□□□□ -0.33
MARK3-223	ENST00000561071	CFTR	P13569	1480 aa		12.99	□□□□□ -0.33
MARK3-223	ENST00000561071	CEP164	Q9UPV0	1460 aa		12.99	□□□□□ -0.33
MARK3-223	ENST00000561071	TSR1	Q2NL82	804 aa	Known RBP	12.99	□□□□□ -0.33
MARK3-223	ENST00000561071	FBXW7	Q969H0	707 aa		12.98	□□□□□ -0.33
MARK3-223	ENST00000561071	ADAM33	Q9BZ11	813 aa		12.98	□□□□□ -0.33
MARK3-223	ENST00000561071	WDR62	O43379	1518 aa		12.98	□□□□□ -0.33
MARK3-223	ENST00000561071	PPP4R3B	Q5MIZ7	849 aa		12.96	□□□□□ -0.33
MARK3-223	ENST00000561071	LCE2D	Q5TA82	110 aa	Predicted RBP	12.96	□□□□□ -0.33
MARK3-223	ENST00000561071	ZMYND10	O75800	440 aa		12.95	□□□□□ -0.34
MARK3-223	ENST00000561071	ERBB3	P21860	1342 aa		12.94	□□□□□ -0.34
MARK3-223	ENST00000561071	CCDC88B	A6NC98	1476 aa		12.94	□□□□□ -0.34
MARK3-223	ENST00000561071	PSD	A5PKW4	1024 aa	Predicted RBP	12.94	□□□□□ -0.34
MARK3-223	ENST00000561071	EMP3	P54852	163 aa		12.94	□□□□□ -0.34
MARK3-223	ENST00000561071	C6orf132	Q5T0Z8	1188 aa		12.94	□□□□□ -0.34
MARK3-223	ENST00000561071	VARS2	Q5ST30	1063 aa	Known RBP	12.93	□□□□□ -0.34
MARK3-223	ENST00000561071	PTGDR	Q13258	359 aa		12.92	□□□□□ -0.34
MARK3-223	ENST00000561071	NPDC1	Q9NQX5	325 aa	Predicted RBP	12.92	□□□□□ -0.34
MARK3-223	ENST00000561071	FCHSD2	O94868	740 aa		12.91	□□□□□ -0.34
MARK3-223	ENST00000561071	BARGIN	Q6ZT62	677 aa		12.91	□□□□□ -0.34
MARK3-223	ENST00000561071	URB2	Q14146	1524 aa	Known RBP	12.9	□□□□□ -0.34
MARK3-223	ENST00000561071	FAM205C	A6NFA0	338 aa		12.9	□□□□□ -0.34
MARK3-223	ENST00000561071	FECH	P22830	423 aa		12.89	□□□□□ -0.35
MARK3-223	ENST00000561071	BCL2L12	Q9HB09	334 aa		12.89	□□□□□ -0.35
MARK3-223	ENST00000561071	SLC24A3	Q9HC58	644 aa		12.89	□□□□□ -0.35
MARK3-223	ENST00000561071	GNPAT	O15228	680 aa		12.87	□□□□□ -0.35
MARK3-223	ENST00000561071	HIC1	Q14526	733 aa		12.87	□□□□□ -0.35
MARK3-223	ENST00000561071	POTEB3	A0JP26	581 aa		12.85	□□□□□ -0.35
MARK3-223	ENST00000561071	COL9A1	P20849	921 aa		12.85	□□□□□ -0.35
MARK3-223	ENST00000561071	POTEB	Q6S5H4	581 aa		12.85	□□□□□ -0.35
MARK3-223	ENST00000561071	PTPRE	P23469	700 aa		12.84	□□□□□ -0.35
MARK3-223	ENST00000561071	KRI1	Q8N9T8	703 aa	Known RBP	12.84	□□□□□ -0.35
MARK3-223	ENST00000561071	POTEE	Q6S8J3	1075 aa		12.83	□□□□□ -0.36
MARK3-223	ENST00000561071	HS3ST6	Q96QI5	342 aa		12.83	□□□□□ -0.36
MARK3-223	ENST00000561071	KCNK17	Q96T54	332 aa		12.82	□□□□□ -0.36
MARK3-223	ENST00000561071	PSEN2	P49810	448 aa		12.8	□□□□□ -0.36
MARK3-223	ENST00000561071	CERK	Q8TCT0	537 aa		12.8	□□□□□ -0.36
MARK3-223	ENST00000561071	AXIN2	Q9Y2T1	843 aa		12.8	□□□□□ -0.36
MARK3-223	ENST00000561071	PPP1R3G	B7ZBB8	358 aa		12.79	□□□□□ -0.36
MARK3-223	ENST00000561071	PADI6	Q6TGC4	694 aa		12.79	□□□□□ -0.36
MARK3-223	ENST00000561071	PRDM2	Q13029	1718 aa		12.79	□□□□□ -0.36
MARK3-223	ENST00000561071	MAP2K5	Q13163	448 aa		12.78	□□□□□ -0.36
MARK3-223	ENST00000561071	ZNF687	Q8N1G0	1237 aa		12.78	□□□□□ -0.36
MARK3-223	ENST00000561071	ZNF608	Q9ULD9	1512 aa	Predicted RBP	12.77	□□□□□ -0.37
MARK3-223	ENST00000561071	IRF6	O14896	467 aa		12.76	□□□□□ -0.37
MARK3-223	ENST00000561071	PRSS12	P56730	875 aa		12.76	□□□□□ -0.37
MARK3-223	ENST00000561071	CCDC102A	Q96A19	550 aa		12.76	□□□□□ -0.37
MARK3-223	ENST00000561071	CDCA7L	Q96GN5	454 aa		12.76	□□□□□ -0.37
MARK3-223	ENST00000561071	MINK1	Q8N4C8	1332 aa	Predicted RBP	12.76	□□□□□ -0.37
MARK3-223	ENST00000561071	TOPBP1	Q92547	1522 aa		12.76	□□□□□ -0.37
MARK3-223	ENST00000561071	ARHGAP33	O14559	1287 aa		12.75	□□□□□ -0.37
MARK3-223	ENST00000561071	FAM161A	Q3B820	660 aa		12.75	□□□□□ -0.37
MARK3-223	ENST00000561071	AK7	Q96M32	723 aa		12.75	□□□□□ -0.37
MARK3-223	ENST00000561071	FAM198A	Q9UFP1	575 aa		12.75	□□□□□ -0.37
MARK3-223	ENST00000561071	DMRTA1	Q5VZB9	504 aa		12.74	□□□□□ -0.37
MARK3-223	ENST00000561071	KCNH8	Q96L42	1107 aa		12.74	□□□□□ -0.37
MARK3-223	ENST00000561071	PROX2	Q3B8N5	592 aa		12.73	□□□□□ -0.37
MARK3-223	ENST00000561071	TTC13	Q8NBP0	860 aa		12.73	□□□□□ -0.37
MARK3-223	ENST00000561071	TSKS	Q9UJT2	592 aa		12.73	□□□□□ -0.37
MARK3-223	ENST00000561071	IFT140	Q96RY7	1462 aa		12.72	□□□□□ -0.37
MARK3-223	ENST00000561071	RBM27	Q9P2N5	1060 aa	Known RBP	12.72	□□□□□ -0.37
MARK3-223	ENST00000561071	SUPT5H	O00267	1087 aa	Known RBP	12.7	□□□□□ -0.38
MARK3-223	ENST00000561071	TRIM66	O15016	1216 aa		12.7	□□□□□ -0.38
MARK3-223	ENST00000561071	PBX2	P40425	430 aa		12.7	□□□□□ -0.38
MARK3-223	ENST00000561071	ZBED2	Q9BTP6	218 aa		12.7	□□□□□ -0.38
MARK3-223	ENST00000561071	DNMBP	Q6XZF7	1577 aa		12.69	□□□□□ -0.38
MARK3-223	ENST00000561071	TRIM6-TRIM34	B2RNG4	842 aa		12.69	□□□□□ -0.38
MARK3-223	ENST00000561071	C3orf80	F5H4A9	247 aa		12.68	□□□□□ -0.38
MARK3-223	ENST00000561071	ADGRG1	Q9Y653	693 aa		12.68	□□□□□ -0.38
MARK3-223	ENST00000561071	ABCC8	Q09428	1581 aa		12.68	□□□□□ -0.38
MARK3-223	ENST00000561071	AQR	O60306	1485 aa	Known RBP eCLIP	12.66	□□□□□ -0.38	5e-8	■■■□□ 18.4
MARK3-223	ENST00000561071	PHOX2B	Q99453	314 aa		12.65	□□□□□ -0.38
MARK3-223	ENST00000561071	BRPF1	P55201	1214 aa	Predicted RBP	12.64	□□□□□ -0.39
MARK3-223	ENST00000561071	POLA1	P09884	1462 aa	Predicted RBP	12.64	□□□□□ -0.39

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