RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 IQGAP3Q86VI3 1631 aa16.64■□□□□ 0.25
SNX1-212ENST00000560861 COL17A1Q9UMD9 1497 aaPredicted RBP16.63■□□□□ 0.25
SNX1-212ENST00000560861 MPHOSPH9Q99550 1183 aa16.63■□□□□ 0.25
SNX1-212ENST00000560861 DHX29Q7Z478 1369 aaKnown RBP16.63■□□□□ 0.25
SNX1-212ENST00000560861 MROH1Q8NDA8 1641 aa16.63■□□□□ 0.25
SNX1-212ENST00000560861 A2MP01023 1474 aa16.61■□□□□ 0.25
SNX1-212ENST00000560861 VWDEQ8N2E2 1590 aa16.61■□□□□ 0.25
SNX1-212ENST00000560861 RNF17Q9BXT8 1623 aaKnown RBP16.61■□□□□ 0.25
SNX1-212ENST00000560861 RAPGEF3O95398 923 aa16.61■□□□□ 0.25
SNX1-212ENST00000560861 TRIM52Q96A61 297 aa16.61■□□□□ 0.25
SNX1-212ENST00000560861 FAM135AQ9P2D6 1515 aa16.6■□□□□ 0.25
SNX1-212ENST00000560861 NUP155O75694 1391 aa16.58■□□□□ 0.24
SNX1-212ENST00000560861 YEATS2Q9ULM3 1422 aa16.58■□□□□ 0.24
SNX1-212ENST00000560861 PRDM15P57071 1507 aaPredicted RBP16.58■□□□□ 0.24
SNX1-212ENST00000560861 REREQ9P2R6 1566 aa16.57■□□□□ 0.24
SNX1-212ENST00000560861 ANKRD30BQ9BXX2 1392 aa16.57■□□□□ 0.24
SNX1-212ENST00000560861 SLC4A1APQ9BWU0 796 aaKnown RBP16.54■□□□□ 0.24
SNX1-212ENST00000560861 ARHGEF40Q8TER5 1519 aa16.54■□□□□ 0.24
SNX1-212ENST00000560861 TET3O43151 1660 aa16.53■□□□□ 0.24
SNX1-212ENST00000560861 SIN3AQ96ST3 1273 aa16.52■□□□□ 0.24
SNX1-212ENST00000560861 LMTK2Q8IWU2 1503 aa16.51■□□□□ 0.23
SNX1-212ENST00000560861 ATP10AO60312 1499 aa16.51■□□□□ 0.23
SNX1-212ENST00000560861 SIGLEC1Q9BZZ2 1709 aa16.5■□□□□ 0.23
SNX1-212ENST00000560861 AGLP35573 1532 aa16.5■□□□□ 0.23
SNX1-212ENST00000560861 PKD2Q13563 968 aa16.5■□□□□ 0.23
SNX1-212ENST00000560861 E9PCH4 1651 aa16.5■□□□□ 0.23
SNX1-212ENST00000560861 MYT1LQ9UL68 1186 aa16.49■□□□□ 0.23
SNX1-212ENST00000560861 RPRD2Q5VT52 1461 aaKnown RBP16.48■□□□□ 0.23
SNX1-212ENST00000560861 KIF3BO15066 747 aa16.48■□□□□ 0.23
SNX1-212ENST00000560861 TIMELESSQ9UNS1 1208 aa16.48■□□□□ 0.23
SNX1-212ENST00000560861 PLA2R1Q13018 1463 aa16.48■□□□□ 0.23
SNX1-212ENST00000560861 CEP152O94986 1710 aa16.48■□□□□ 0.23
SNX1-212ENST00000560861 EFCAB6Q5THR3 1501 aa16.45■□□□□ 0.22
SNX1-212ENST00000560861 ABCC3O15438 1527 aa16.45■□□□□ 0.22
SNX1-212ENST00000560861 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.44■□□□□ 0.223e-9■■□□□ 12.8
SNX1-212ENST00000560861 ZC3H13Q5T200 1668 aaKnown RBP16.43■□□□□ 0.22
SNX1-212ENST00000560861 KANK1Q14678 1352 aa16.43■□□□□ 0.22
SNX1-212ENST00000560861 SPHKAPQ2M3C7 1700 aa16.42■□□□□ 0.22
SNX1-212ENST00000560861 NEUROD1Q13562 356 aa16.42■□□□□ 0.22
SNX1-212ENST00000560861 PTPRTO14522 1441 aa16.42■□□□□ 0.22
SNX1-212ENST00000560861 CAMSAP1Q5T5Y3 1602 aa16.41■□□□□ 0.22
SNX1-212ENST00000560861 TRPM2O94759 1503 aa16.4■□□□□ 0.22
SNX1-212ENST00000560861 KDM4FA0A1W2PPD8 638 aa16.39■□□□□ 0.21
SNX1-212ENST00000560861 MSH5O43196 834 aa16.38■□□□□ 0.21
SNX1-212ENST00000560861 TONSLQ96HA7 1378 aa16.38■□□□□ 0.21
SNX1-212ENST00000560861 PPP1R15AO75807 674 aaPredicted RBP16.36■□□□□ 0.21
SNX1-212ENST00000560861 ARHGAP31Q2M1Z3 1444 aa16.36■□□□□ 0.21
SNX1-212ENST00000560861 CLTCL1P53675 1640 aa16.35■□□□□ 0.21
SNX1-212ENST00000560861 PIAS4Q8N2W9 510 aaPredicted RBP16.35■□□□□ 0.21
SNX1-212ENST00000560861 NPATQ14207 1427 aa16.35■□□□□ 0.21
SNX1-212ENST00000560861 GGT6Q6P531 493 aa16.34■□□□□ 0.21
SNX1-212ENST00000560861 CCDC144AA2RUR9 1427 aa16.33■□□□□ 0.2
SNX1-212ENST00000560861 NEURL4Q96JN8 1562 aa16.33■□□□□ 0.2
SNX1-212ENST00000560861 L3MBTL2Q969R5 705 aa16.32■□□□□ 0.2
SNX1-212ENST00000560861 NOS1P29475 1434 aa16.31■□□□□ 0.2
SNX1-212ENST00000560861 SPATA31E1Q6ZUB1 1445 aa16.31■□□□□ 0.2
SNX1-212ENST00000560861 PPP6R1Q9UPN7 881 aa16.31■□□□□ 0.2
SNX1-212ENST00000560861 CLTCQ00610 1675 aaKnown RBP16.3■□□□□ 0.2
SNX1-212ENST00000560861 PIK3C2BO00750 1634 aa16.3■□□□□ 0.2
SNX1-212ENST00000560861 SYNMO15061 1565 aa16.3■□□□□ 0.2
SNX1-212ENST00000560861 WASHC2CQ9Y4E1 1318 aa16.29■□□□□ 0.2
SNX1-212ENST00000560861 CNTLNQ9NXG0 1405 aa16.28■□□□□ 0.2
SNX1-212ENST00000560861 PREX1Q8TCU6 1659 aa16.28■□□□□ 0.2
SNX1-212ENST00000560861 CFAP65Q6ZU64 1925 aaKnown RBP16.28■□□□□ 0.2
SNX1-212ENST00000560861 ADRA2BP18089 450 aa16.28■□□□□ 0.2
SNX1-212ENST00000560861 UGGT1Q9NYU2 1555 aa16.28■□□□□ 0.2
SNX1-212ENST00000560861 UHRF1BP1Q6BDS2 1440 aa16.27■□□□□ 0.19
SNX1-212ENST00000560861 MROH2AA6NES4 1674 aa16.25■□□□□ 0.19
SNX1-212ENST00000560861 KIF1BO60333 1816 aa16.25■□□□□ 0.19
SNX1-212ENST00000560861 ADGRB3O60242 1522 aa16.24■□□□□ 0.19
SNX1-212ENST00000560861 IFT172Q9UG01 1749 aa16.23■□□□□ 0.19
SNX1-212ENST00000560861 SPATA31D1Q6ZQQ2 1576 aa16.23■□□□□ 0.19
SNX1-212ENST00000560861 ERVK-7P63135 1459 aa16.22■□□□□ 0.19
SNX1-212ENST00000560861 NBPF8Q3BBV2 869 aa16.22■□□□□ 0.19
SNX1-212ENST00000560861 RALGAPBQ86X10 1494 aa16.18■□□□□ 0.18
SNX1-212ENST00000560861 PRAG1Q86YV5 1406 aa16.18■□□□□ 0.18
SNX1-212ENST00000560861 FER1L4A9Z1Z3 1794 aa16.18■□□□□ 0.18
SNX1-212ENST00000560861 TRPM1Q7Z4N2 1603 aa16.17■□□□□ 0.18
SNX1-212ENST00000560861 MADDQ8WXG6 1647 aa16.17■□□□□ 0.18
SNX1-212ENST00000560861 ZNF316A6NFI3 1004 aaPredicted RBP16.17■□□□□ 0.18
SNX1-212ENST00000560861 MLECQ14165 292 aa16.17■□□□□ 0.18
SNX1-212ENST00000560861 PPLO60437 1756 aa16.16■□□□□ 0.18
SNX1-212ENST00000560861 MYOM2P54296 1465 aa16.16■□□□□ 0.18
SNX1-212ENST00000560861 ADAMTSL3P82987 1691 aa16.15■□□□□ 0.18
SNX1-212ENST00000560861 TMEM131LA2VDJ0 1609 aa16.15■□□□□ 0.18
SNX1-212ENST00000560861 MYO5BQ9ULV0 1848 aa16.15■□□□□ 0.18
SNX1-212ENST00000560861 ZMYM3Q14202 1370 aa16.14■□□□□ 0.17
SNX1-212ENST00000560861 FBXO31Q5XUX0 539 aaPredicted RBP16.14■□□□□ 0.17
SNX1-212ENST00000560861 DCAF11Q8TEB1 546 aa16.14■□□□□ 0.17
SNX1-212ENST00000560861 NRXN1Q9ULB1 1477 aa16.14■□□□□ 0.17
SNX1-212ENST00000560861 C3P01024 1663 aa16.14■□□□□ 0.17
SNX1-212ENST00000560861 ARID4BQ4LE39 1312 aaPredicted RBP16.14■□□□□ 0.17
SNX1-212ENST00000560861 LAMC1P11047 1609 aa16.12■□□□□ 0.17
SNX1-212ENST00000560861 RGL3Q3MIN7 710 aa16.12■□□□□ 0.17
SNX1-212ENST00000560861 SLC52A1Q9NWF4 448 aa16.12■□□□□ 0.17
SNX1-212ENST00000560861 KIAA1210Q9ULL0 1709 aa16.11■□□□□ 0.17
SNX1-212ENST00000560861 NEXMIFQ5QGS0 1516 aa16.11■□□□□ 0.17
SNX1-212ENST00000560861 STAC3Q96MF2 364 aa16.11■□□□□ 0.17
SNX1-212ENST00000560861 GPRASP1Q5JY77 1395 aa16.11■□□□□ 0.17
SNX1-212ENST00000560861 IDI1Q13907 227 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms