RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 FER1L4A9Z1Z3 1794 aa15.13■□□□□ 0.01
USP3-216ENST00000559873 MADDQ8WXG6 1647 aa15.13■□□□□ 0.01
USP3-216ENST00000559873 PRDM15P57071 1507 aaPredicted RBP15.12■□□□□ 0.01
USP3-216ENST00000559873 KANK1Q14678 1352 aa15.12■□□□□ 0.01
USP3-216ENST00000559873 NAIPQ13075 1403 aa15.12■□□□□ 0.01
USP3-216ENST00000559873 GGT6Q6P531 493 aa15.12■□□□□ 0.01
USP3-216ENST00000559873 DEPDC5O75140 1603 aa15.12■□□□□ 0.01
USP3-216ENST00000559873 ZC3H13Q5T200 1668 aaKnown RBP15.12■□□□□ 0.01
USP3-216ENST00000559873 KDM5DQ9BY66 1539 aa15.12■□□□□ 0.01
USP3-216ENST00000559873 TRIM26Q12899 539 aaPredicted RBP15.1■□□□□ 0.01
USP3-216ENST00000559873 ACIN1Q9UKV3 1341 aaKnown RBP15.1■□□□□ 0.01
USP3-216ENST00000559873 UNC13BO14795 1591 aa15.1■□□□□ 0.01
USP3-216ENST00000559873 MROH1Q8NDA8 1641 aa15.09■□□□□ 0.01
USP3-216ENST00000559873 RIMS1Q86UR5 1692 aaKnown RBP15.09■□□□□ 0.01
USP3-216ENST00000559873 MROH2AA6NES4 1674 aa15.07■□□□□ 0
USP3-216ENST00000559873 WASHC2CQ9Y4E1 1318 aa15.07■□□□□ 0
USP3-216ENST00000559873 SETD5Q9C0A6 1442 aa15.06■□□□□ 0
USP3-216ENST00000559873 ABCC3O15438 1527 aa15.06■□□□□ 0
USP3-216ENST00000559873 CLTCQ00610 1675 aaKnown RBP15.06■□□□□ 0
USP3-216ENST00000559873 KDM4FA0A1W2PPD8 638 aa15.05■□□□□ -0
USP3-216ENST00000559873 PTPRMP28827 1452 aa15.05■□□□□ -0
USP3-216ENST00000559873 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.04■□□□□ -01e-8■■■□□ 15.2
USP3-216ENST00000559873 VWDEQ8N2E2 1590 aa15.03■□□□□ -0
USP3-216ENST00000559873 LMTK2Q8IWU2 1503 aa15.03■□□□□ -0
USP3-216ENST00000559873 NUP155O75694 1391 aa15.02■□□□□ -0
USP3-216ENST00000559873 CAMSAP1Q5T5Y3 1602 aa15.02□□□□□ -0.01
USP3-216ENST00000559873 IQGAP3Q86VI3 1631 aa15.02□□□□□ -0.01
USP3-216ENST00000559873 CEP152O94986 1710 aa15.01□□□□□ -0.01
USP3-216ENST00000559873 PZPP20742 1482 aa15.01□□□□□ -0.01
USP3-216ENST00000559873 EFCAB6Q5THR3 1501 aa15□□□□□ -0.01
USP3-216ENST00000559873 TET3O43151 1660 aa15□□□□□ -0.01
USP3-216ENST00000559873 C3P01024 1663 aa15□□□□□ -0.01
USP3-216ENST00000559873 ZMYM3Q14202 1370 aa14.99□□□□□ -0.01
USP3-216ENST00000559873 RAB3GAP2Q9H2M9 1393 aa14.99□□□□□ -0.01
USP3-216ENST00000559873 ARHGAP31Q2M1Z3 1444 aa14.99□□□□□ -0.01
USP3-216ENST00000559873 TRIM52Q96A61 297 aa14.98□□□□□ -0.01
USP3-216ENST00000559873 NPATQ14207 1427 aa14.98□□□□□ -0.01
USP3-216ENST00000559873 RPRD2Q5VT52 1461 aaKnown RBP14.97□□□□□ -0.01
USP3-216ENST00000559873 HRCP23327 699 aa14.96□□□□□ -0.01
USP3-216ENST00000559873 AEBP2Q6ZN18 517 aaPredicted RBP14.96□□□□□ -0.01
USP3-216ENST00000559873 PLPPR3Q6T4P5 718 aa14.95□□□□□ -0.02
USP3-216ENST00000559873 CEBPAP49715 358 aaPredicted RBP14.93□□□□□ -0.02
USP3-216ENST00000559873 ERVK-7P63135 1459 aa14.93□□□□□ -0.02
USP3-216ENST00000559873 SPATA31D1Q6ZQQ2 1576 aa14.93□□□□□ -0.02
USP3-216ENST00000559873 SLC4A1APQ9BWU0 796 aaKnown RBP14.92□□□□□ -0.02
USP3-216ENST00000559873 PREX1Q8TCU6 1659 aa14.91□□□□□ -0.02
USP3-216ENST00000559873 TNRQ92752 1358 aa14.91□□□□□ -0.02
USP3-216ENST00000559873 UHRF1BP1Q6BDS2 1440 aa14.91□□□□□ -0.02
USP3-216ENST00000559873 E9PCH4 1651 aa14.9□□□□□ -0.02
USP3-216ENST00000559873 NLRP1Q9C000 1473 aa14.89□□□□□ -0.03
USP3-216ENST00000559873 MYO3AQ8NEV4 1616 aa14.89□□□□□ -0.03
USP3-216ENST00000559873 SETD1BQ9UPS6 1966 aaKnown RBP14.89□□□□□ -0.03
USP3-216ENST00000559873 NOS1P29475 1434 aa14.88□□□□□ -0.03
USP3-216ENST00000559873 PCGF6Q9BYE7 350 aa14.87□□□□□ -0.03
USP3-216ENST00000559873 PKD2Q13563 968 aa14.86□□□□□ -0.03
USP3-216ENST00000559873 FBXO31Q5XUX0 539 aaPredicted RBP14.86□□□□□ -0.03
USP3-216ENST00000559873 MPHOSPH9Q99550 1183 aa14.86□□□□□ -0.03
USP3-216ENST00000559873 ZNF142P52746 1687 aaPredicted RBP14.86□□□□□ -0.03
USP3-216ENST00000559873 SPHKAPQ2M3C7 1700 aa14.86□□□□□ -0.03
USP3-216ENST00000559873 CEP170BQ9Y4F5 1589 aaPredicted RBP14.85□□□□□ -0.03
USP3-216ENST00000559873 A2ML1A8K2U0 1454 aa14.84□□□□□ -0.03
USP3-216ENST00000559873 TRPM2O94759 1503 aa14.84□□□□□ -0.03
USP3-216ENST00000559873 SYNMO15061 1565 aa14.84□□□□□ -0.03
USP3-216ENST00000559873 SLC52A1Q9NWF4 448 aa14.83□□□□□ -0.04
USP3-216ENST00000559873 PTPRTO14522 1441 aa14.83□□□□□ -0.04
USP3-216ENST00000559873 CFAP65Q6ZU64 1925 aaKnown RBP14.82□□□□□ -0.04
USP3-216ENST00000559873 LMTK3Q96Q04 1460 aa14.82□□□□□ -0.04
USP3-216ENST00000559873 UGGT1Q9NYU2 1555 aa14.81□□□□□ -0.04
USP3-216ENST00000559873 ADGRB3O60242 1522 aa14.8□□□□□ -0.04
USP3-216ENST00000559873 PIK3C2BO00750 1634 aa14.8□□□□□ -0.04
USP3-216ENST00000559873 CCDC144AA2RUR9 1427 aa14.79□□□□□ -0.04
USP3-216ENST00000559873 KDM5AP29375 1690 aaKnown RBP14.79□□□□□ -0.04
USP3-216ENST00000559873 STAG3Q9UJ98 1225 aa14.79□□□□□ -0.04
USP3-216ENST00000559873 FOXD1Q16676 465 aa14.76□□□□□ -0.05
USP3-216ENST00000559873 THEMISQ8N1K5 641 aaPredicted RBP14.76□□□□□ -0.05
USP3-216ENST00000559873 CLTCL1P53675 1640 aa14.76□□□□□ -0.05
USP3-216ENST00000559873 PLA2R1Q13018 1463 aa14.76□□□□□ -0.05
USP3-216ENST00000559873 UBR1Q8IWV7 1749 aa14.75□□□□□ -0.05
USP3-216ENST00000559873 IDI1Q13907 227 aa14.75□□□□□ -0.05
USP3-216ENST00000559873 DHX57Q6P158 1386 aaKnown RBP14.74□□□□□ -0.05
USP3-216ENST00000559873 CHGAP10645 457 aaKnown RBP14.73□□□□□ -0.05
USP3-216ENST00000559873 KIF1BO60333 1816 aa14.73□□□□□ -0.05
USP3-216ENST00000559873 ANKRD30BQ9BXX2 1392 aa14.73□□□□□ -0.05
USP3-216ENST00000559873 TMEM131LA2VDJ0 1609 aa14.72□□□□□ -0.05
USP3-216ENST00000559873 SLIT1O75093 1534 aa14.71□□□□□ -0.06
USP3-216ENST00000559873 NEURL4Q96JN8 1562 aa14.7□□□□□ -0.06
USP3-216ENST00000559873 HDGFP51858 240 aaKnown RBP14.7□□□□□ -0.06
USP3-216ENST00000559873 HSPA2P54652 639 aa14.7□□□□□ -0.06
USP3-216ENST00000559873 TMEM2Q9UHN6 1383 aa14.7□□□□□ -0.06
USP3-216ENST00000559873 ARHGAP23Q9P227 1491 aa14.69□□□□□ -0.06
USP3-216ENST00000559873 EID1Q9Y6B2 187 aa14.69□□□□□ -0.06
USP3-216ENST00000559873 ANKLE2Q86XL3 938 aa14.68□□□□□ -0.06
USP3-216ENST00000559873 POLR1AO95602 1720 aaPredicted RBP14.68□□□□□ -0.06
USP3-216ENST00000559873 SCAF11Q99590 1463 aaKnown RBP14.68□□□□□ -0.06
USP3-216ENST00000559873 ZNF326Q5BKZ1 582 aaKnown RBP14.67□□□□□ -0.06
USP3-216ENST00000559873 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.67□□□□□ -0.06
USP3-216ENST00000559873 PPP1R15AO75807 674 aaPredicted RBP14.66□□□□□ -0.06
USP3-216ENST00000559873 RIMS2Q9UQ26 1411 aa14.66□□□□□ -0.06
USP3-216ENST00000559873 RPGRIP1LQ68CZ1 1315 aa14.66□□□□□ -0.06
USP3-216ENST00000559873 MYO5BQ9ULV0 1848 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms