RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 ZBTB22O15209 634 aa10.72□□□□□ -0.69
USP3-211ENST00000559257 EFCC1Q9HA90 598 aa10.72□□□□□ -0.69
USP3-211ENST00000559257 CEP164Q9UPV0 1460 aa10.72□□□□□ -0.69
USP3-211ENST00000559257 UQCRHLA0A096LP55 91 aa10.72□□□□□ -0.69
USP3-211ENST00000559257 UQCRHP07919 91 aa10.72□□□□□ -0.69
USP3-211ENST00000559257 ZSCAN30Q86W11 494 aa10.72□□□□□ -0.69
USP3-211ENST00000559257 SIN3AQ96ST3 1273 aa10.71□□□□□ -0.69
USP3-211ENST00000559257 TMC1Q8TDI8 760 aa10.7□□□□□ -0.7
USP3-211ENST00000559257 HSP90AB3PQ58FF7 597 aa10.69□□□□□ -0.7
USP3-211ENST00000559257 CERS3Q8IU89 383 aa10.69□□□□□ -0.7
USP3-211ENST00000559257 PSMD1Q99460 953 aa10.69□□□□□ -0.7
USP3-211ENST00000559257 GRPEL1Q9HAV7 217 aa10.69□□□□□ -0.7
USP3-211ENST00000559257 CCDC66A2RUB6 948 aa10.69□□□□□ -0.7
USP3-211ENST00000559257 TULP2O00295 520 aa10.69□□□□□ -0.7
USP3-211ENST00000559257 AEBP1Q8IUX7 1158 aa10.69□□□□□ -0.7
USP3-211ENST00000559257 NPM1P06748 294 aaKnown RBP eCLIP10.68□□□□□ -0.7
USP3-211ENST00000559257 SLC4A3P48751 1232 aa10.68□□□□□ -0.7
USP3-211ENST00000559257 KCNJ4P48050 445 aa10.67□□□□□ -0.7
USP3-211ENST00000559257 CSPP1Q1MSJ5 1256 aa10.67□□□□□ -0.7
USP3-211ENST00000559257 NBPF1Q3BBV0 1214 aa10.67□□□□□ -0.7
USP3-211ENST00000559257 HS1BP3Q53T59 392 aa10.67□□□□□ -0.7
USP3-211ENST00000559257 SOGA1O94964 1423 aa10.66□□□□□ -0.7
USP3-211ENST00000559257 ZNF500O60304 480 aaPredicted RBP10.66□□□□□ -0.7
USP3-211ENST00000559257 R3HCC1Q9Y3T6 440 aaKnown RBP10.66□□□□□ -0.7
USP3-211ENST00000559257 WDR97A6NE52 1622 aa10.66□□□□□ -0.7
USP3-211ENST00000559257 NINLQ9Y2I6 1382 aa10.65□□□□□ -0.7
USP3-211ENST00000559257 LMOD3Q0VAK6 560 aa10.65□□□□□ -0.7
USP3-211ENST00000559257 CCDC173Q0VFZ6 552 aa10.65□□□□□ -0.7
USP3-211ENST00000559257 SASS6Q6UVJ0 657 aa10.65□□□□□ -0.7
USP3-211ENST00000559257 TIGD1Q96MW7 591 aa10.65□□□□□ -0.7
USP3-211ENST00000559257 KIF3AQ9Y496 699 aa10.65□□□□□ -0.7
USP3-211ENST00000559257 MSNP26038 577 aaKnown RBP10.65□□□□□ -0.71
USP3-211ENST00000559257 BECN1Q14457 450 aa10.65□□□□□ -0.71
USP3-211ENST00000559257 NBPF11Q86T75 865 aa10.65□□□□□ -0.71
USP3-211ENST00000559257 P3H3Q8IVL6 736 aa10.65□□□□□ -0.71
USP3-211ENST00000559257 BANK1Q8NDB2 785 aa10.65□□□□□ -0.71
USP3-211ENST00000559257 PPP1R9BQ96SB3 815 aa10.65□□□□□ -0.71
USP3-211ENST00000559257 NUDCQ9Y266 331 aa10.65□□□□□ -0.71
USP3-211ENST00000559257 AKNAQ7Z591 1439 aa10.64□□□□□ -0.71
USP3-211ENST00000559257 KCNA4P22459 653 aa10.64□□□□□ -0.71
USP3-211ENST00000559257 SATB1Q01826 763 aa10.64□□□□□ -0.71
USP3-211ENST00000559257 GABPB1Q06547 395 aaPredicted RBP10.63□□□□□ -0.71
USP3-211ENST00000559257 RAI14Q9P0K7 980 aa10.62□□□□□ -0.71
USP3-211ENST00000559257 SH3BP1Q9Y3L3 701 aa10.62□□□□□ -0.71
USP3-211ENST00000559257 TTC36A6NLP5 189 aa10.62□□□□□ -0.71
USP3-211ENST00000559257 MYCBPQ99417 103 aaPredicted RBP10.62□□□□□ -0.71
USP3-211ENST00000559257 BICRAQ9NZM4 1560 aa10.62□□□□□ -0.71
USP3-211ENST00000559257 CBX1P83916 185 aa10.61□□□□□ -0.71
USP3-211ENST00000559257 CEP83Q9Y592 693 aa10.61□□□□□ -0.71
USP3-211ENST00000559257 TRIM6-TRIM34B2RNG4 842 aa10.61□□□□□ -0.71
USP3-211ENST00000559257 UBTFP17480 764 aaKnown RBP10.61□□□□□ -0.71
USP3-211ENST00000559257 OS9Q13438 667 aaPredicted RBP10.61□□□□□ -0.71
USP3-211ENST00000559257 TRIM34Q9BYJ4 488 aa10.61□□□□□ -0.71
USP3-211ENST00000559257 VPS8Q8N3P4 1428 aa10.6□□□□□ -0.71
USP3-211ENST00000559257 ZNF771Q7L3S4 317 aaPredicted RBP10.6□□□□□ -0.71
USP3-211ENST00000559257 PPP6R1Q9UPN7 881 aa10.6□□□□□ -0.71
USP3-211ENST00000559257 PRR29P0C7W0 189 aa10.6□□□□□ -0.71
USP3-211ENST00000559257 MCM5P33992 734 aa10.6□□□□□ -0.71
USP3-211ENST00000559257 MFAP1P55081 439 aaKnown RBP10.6□□□□□ -0.71
USP3-211ENST00000559257 CTR9Q6PD62 1173 aa10.6□□□□□ -0.71
USP3-211ENST00000559257 CFAP44Q96MT7 982 aa10.6□□□□□ -0.71
USP3-211ENST00000559257 CALCOCO1Q9P1Z2 691 aa10.6□□□□□ -0.71
USP3-211ENST00000559257 MAPKBP1O60336 1514 aa10.59□□□□□ -0.71
USP3-211ENST00000559257 LOC102724159A0A0B4J2E5 919 aa10.59□□□□□ -0.71
USP3-211ENST00000559257 BRPF1P55201 1214 aaPredicted RBP10.59□□□□□ -0.71
USP3-211ENST00000559257 PWP2Q15269 919 aaKnown RBP10.59□□□□□ -0.71
USP3-211ENST00000559257 NBPF9Q3BBW0 867 aa10.59□□□□□ -0.71
USP3-211ENST00000559257 CHMP4CQ96CF2 233 aa10.59□□□□□ -0.71
USP3-211ENST00000559257 NCAPGQ9BPX3 1015 aa10.59□□□□□ -0.71
USP3-211ENST00000559257 CAPN2P17655 700 aa10.58□□□□□ -0.72
USP3-211ENST00000559257 CLIP1P30622 1438 aa10.58□□□□□ -0.72
USP3-211ENST00000559257 MAFGO15525 162 aa10.58□□□□□ -0.72
USP3-211ENST00000559257 MAP2K1Q02750 393 aaPredicted RBP10.58□□□□□ -0.72
USP3-211ENST00000559257 GPATCH11Q8N954 259 aa10.58□□□□□ -0.72
USP3-211ENST00000559257 CFAP65Q6ZU64 1925 aaKnown RBP10.58□□□□□ -0.72
USP3-211ENST00000559257 SYNJ1O43426 1573 aa10.58□□□□□ -0.72
USP3-211ENST00000559257 ERICH3Q5RHP9 1530 aa10.57□□□□□ -0.72
USP3-211ENST00000559257 IRF6O14896 467 aa10.57□□□□□ -0.72
USP3-211ENST00000559257 ANAPC15P60006 121 aa10.57□□□□□ -0.72
USP3-211ENST00000559257 FAM161AQ3B820 660 aa10.57□□□□□ -0.72
USP3-211ENST00000559257 CC2D2BQ6DHV5 1058 aa10.57□□□□□ -0.72
USP3-211ENST00000559257 CCDC172P0C7W6 258 aa10.57□□□□□ -0.72
USP3-211ENST00000559257 MCM4P33991 863 aa10.57□□□□□ -0.72
USP3-211ENST00000559257 GTF2F1P35269 517 aaKnown RBP eCLIP10.57□□□□□ -0.72
USP3-211ENST00000559257 MYRIPQ8NFW9 859 aa10.57□□□□□ -0.72
USP3-211ENST00000559257 ANTXR1Q9H6X2 564 aa10.57□□□□□ -0.72
USP3-211ENST00000559257 SMC4Q9NTJ3 1288 aa10.57□□□□□ -0.72
USP3-211ENST00000559257 SEMA3FQ13275 785 aa10.56□□□□□ -0.72
USP3-211ENST00000559257 ATP2B3Q16720 1220 aa10.56□□□□□ -0.72
USP3-211ENST00000559257 SIRT1Q96EB6 747 aa10.56□□□□□ -0.72
USP3-211ENST00000559257 FEZ1Q99689 392 aa10.56□□□□□ -0.72
USP3-211ENST00000559257 PRDM16Q9HAZ2 1276 aa10.56□□□□□ -0.72
USP3-211ENST00000559257 NOL7Q9UMY1 257 aaKnown RBP10.56□□□□□ -0.72
USP3-211ENST00000559257 TOP2BQ02880 1626 aa10.56□□□□□ -0.72
USP3-211ENST00000559257 BIVM-ERCC5R4GMW8 1640 aa10.56□□□□□ -0.72
USP3-211ENST00000559257 BRMS1Q9HCU9 246 aa10.56□□□□□ -0.72
USP3-211ENST00000559257 RUSC2Q8N2Y8 1516 aa10.55□□□□□ -0.72
USP3-211ENST00000559257 RBM28Q9NW13 759 aaKnown RBP10.55□□□□□ -0.72
USP3-211ENST00000559257 BSDC1Q9NW68 430 aaPredicted RBP10.55□□□□□ -0.72
USP3-211ENST00000559257 ATAD2BQ9ULI0 1458 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms