RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 RBM33Q96EV2 1170 aaKnown RBP7.93□□□□□ -1.14
SPG11-211ENST00000558561 JPH4Q96JJ6 628 aa7.92□□□□□ -1.14
SPG11-211ENST00000558561 NCAPD3P42695 1498 aa7.92□□□□□ -1.14
SPG11-211ENST00000558561 TYW1BQ6NUM6 668 aa7.91□□□□□ -1.14
SPG11-211ENST00000558561 EPAS1Q99814 870 aa7.91□□□□□ -1.14
SPG11-211ENST00000558561 NUTM2FA1L443 756 aa7.9□□□□□ -1.14
SPG11-211ENST00000558561 EMP3P54852 163 aa7.9□□□□□ -1.14
SPG11-211ENST00000558561 ZDHHC16Q969W1 377 aa7.9□□□□□ -1.14
SPG11-211ENST00000558561 PCDH10Q9P2E7 1040 aa7.9□□□□□ -1.14
SPG11-211ENST00000558561 ERBB3P21860 1342 aa7.89□□□□□ -1.15
SPG11-211ENST00000558561 EN1Q05925 392 aaPredicted RBP7.89□□□□□ -1.15
SPG11-211ENST00000558561 ADAM33Q9BZ11 813 aa7.89□□□□□ -1.15
SPG11-211ENST00000558561 WIZO95785 1651 aa7.89□□□□□ -1.15
SPG11-211ENST00000558561 MAP3K7O43318 606 aa7.88□□□□□ -1.15
SPG11-211ENST00000558561 TSR1Q2NL82 804 aaKnown RBP7.88□□□□□ -1.15
SPG11-211ENST00000558561 PPP4R3BQ5MIZ7 849 aa7.88□□□□□ -1.15
SPG11-211ENST00000558561 VARS2Q5ST30 1063 aaKnown RBP7.88□□□□□ -1.15
SPG11-211ENST00000558561 ZC3H15Q8WU90 426 aaKnown RBP7.88□□□□□ -1.15
SPG11-211ENST00000558561 FBXW7Q969H0 707 aa7.88□□□□□ -1.15
SPG11-211ENST00000558561 BAZ1AQ9NRL2 1556 aaPredicted RBP7.88□□□□□ -1.15
SPG11-211ENST00000558561 POTEB3A0JP26 581 aa7.87□□□□□ -1.15
SPG11-211ENST00000558561 FAM205CA6NFA0 338 aa7.87□□□□□ -1.15
SPG11-211ENST00000558561 POTEBQ6S5H4 581 aa7.87□□□□□ -1.15
SPG11-211ENST00000558561 GPIHBP1Q8IV16 184 aa7.87□□□□□ -1.15
SPG11-211ENST00000558561 NESP48681 1621 aa7.86□□□□□ -1.15
SPG11-211ENST00000558561 PSDA5PKW4 1024 aaPredicted RBP7.86□□□□□ -1.15
SPG11-211ENST00000558561 C6orf132Q5T0Z8 1188 aa7.86□□□□□ -1.15
SPG11-211ENST00000558561 CDHR5Q9HBB8 845 aa7.86□□□□□ -1.15
SPG11-211ENST00000558561 GPR37O15354 613 aa7.84□□□□□ -1.15
SPG11-211ENST00000558561 NPDC1Q9NQX5 325 aaPredicted RBP7.84□□□□□ -1.15
SPG11-211ENST00000558561 RSF1Q96T23 1441 aaPredicted RBP7.84□□□□□ -1.15
SPG11-211ENST00000558561 BCL2L12Q9HB09 334 aa7.83□□□□□ -1.16
SPG11-211ENST00000558561 SMARCA2P51531 1590 aa7.83□□□□□ -1.16
SPG11-211ENST00000558561 BAZ1BQ9UIG0 1483 aaKnown RBP7.82□□□□□ -1.16
SPG11-211ENST00000558561 COL9A1P20849 921 aa7.82□□□□□ -1.16
SPG11-211ENST00000558561 PTGDRQ13258 359 aa7.82□□□□□ -1.16
SPG11-211ENST00000558561 HS3ST6Q96QI5 342 aa7.82□□□□□ -1.16
SPG11-211ENST00000558561 PEG3Q9GZU2 1588 aa7.81□□□□□ -1.16
SPG11-211ENST00000558561 ZMYND10O75800 440 aa7.81□□□□□ -1.16
SPG11-211ENST00000558561 FCHSD2O94868 740 aa7.81□□□□□ -1.16
SPG11-211ENST00000558561 POTEEQ6S8J3 1075 aa7.81□□□□□ -1.16
SPG11-211ENST00000558561 AXIN2Q9Y2T1 843 aa7.81□□□□□ -1.16
SPG11-211ENST00000558561 FECHP22830 423 aa7.8□□□□□ -1.16
SPG11-211ENST00000558561 PTPREP23469 700 aa7.8□□□□□ -1.16
SPG11-211ENST00000558561 BARGINQ6ZT62 677 aa7.8□□□□□ -1.16
SPG11-211ENST00000558561 KCNK17Q96T54 332 aa7.8□□□□□ -1.16
SPG11-211ENST00000558561 PSEN2P49810 448 aa7.79□□□□□ -1.16
SPG11-211ENST00000558561 ZNF687Q8N1G0 1237 aa7.79□□□□□ -1.16
SPG11-211ENST00000558561 HMGXB3Q12766 1538 aa7.78□□□□□ -1.16
SPG11-211ENST00000558561 GNPATO15228 680 aa7.78□□□□□ -1.16
SPG11-211ENST00000558561 HIC1Q14526 733 aa7.78□□□□□ -1.16
SPG11-211ENST00000558561 KRI1Q8N9T8 703 aaKnown RBP7.77□□□□□ -1.17
SPG11-211ENST00000558561 ARHGAP33O14559 1287 aa7.76□□□□□ -1.17
SPG11-211ENST00000558561 DMRTA1Q5VZB9 504 aa7.76□□□□□ -1.17
SPG11-211ENST00000558561 CERKQ8TCT0 537 aa7.76□□□□□ -1.17
SPG11-211ENST00000558561 SLC24A3Q9HC58 644 aa7.76□□□□□ -1.17
SPG11-211ENST00000558561 PPP1R3GB7ZBB8 358 aa7.75□□□□□ -1.17
SPG11-211ENST00000558561 PRSS12P56730 875 aa7.75□□□□□ -1.17
SPG11-211ENST00000558561 CDCA7LQ96GN5 454 aa7.75□□□□□ -1.17
SPG11-211ENST00000558561 FAM161AQ3B820 660 aa7.74□□□□□ -1.17
SPG11-211ENST00000558561 PADI6Q6TGC4 694 aa7.74□□□□□ -1.17
SPG11-211ENST00000558561 FAM198AQ9UFP1 575 aa7.74□□□□□ -1.17
SPG11-211ENST00000558561 SUPT5HO00267 1087 aaKnown RBP7.73□□□□□ -1.17
SPG11-211ENST00000558561 PBX2P40425 430 aa7.73□□□□□ -1.17
SPG11-211ENST00000558561 PROX2Q3B8N5 592 aa7.73□□□□□ -1.17
SPG11-211ENST00000558561 KCNH8Q96L42 1107 aa7.73□□□□□ -1.17
SPG11-211ENST00000558561 IRF6O14896 467 aa7.72□□□□□ -1.17
SPG11-211ENST00000558561 MAP2K5Q13163 448 aa7.72□□□□□ -1.17
SPG11-211ENST00000558561 TTC13Q8NBP0 860 aa7.72□□□□□ -1.17
SPG11-211ENST00000558561 ZBED2Q9BTP6 218 aa7.72□□□□□ -1.17
SPG11-211ENST00000558561 TSKSQ9UJT2 592 aa7.72□□□□□ -1.17
SPG11-211ENST00000558561 MINK1Q8N4C8 1332 aaPredicted RBP7.72□□□□□ -1.17
SPG11-211ENST00000558561 CADPSQ9ULU8 1353 aa7.71□□□□□ -1.18
SPG11-211ENST00000558561 CCDC88BA6NC98 1476 aa7.7□□□□□ -1.18
SPG11-211ENST00000558561 ERCC6Q03468 1493 aa7.7□□□□□ -1.18
SPG11-211ENST00000558561 TRIM6-TRIM34B2RNG4 842 aa7.7□□□□□ -1.18
SPG11-211ENST00000558561 C3orf80F5H4A9 247 aa7.7□□□□□ -1.18
SPG11-211ENST00000558561 CDAN1Q8IWY9 1227 aa7.69□□□□□ -1.18
SPG11-211ENST00000558561 CCDC102AQ96A19 550 aa7.69□□□□□ -1.18
SPG11-211ENST00000558561 AK7Q96M32 723 aa7.69□□□□□ -1.18
SPG11-211ENST00000558561 KIAA1468Q9P260 1216 aa7.69□□□□□ -1.18
SPG11-211ENST00000558561 RBM27Q9P2N5 1060 aaKnown RBP7.69□□□□□ -1.18
SPG11-211ENST00000558561 VPS9D1Q9Y2B5 631 aa7.69□□□□□ -1.18
SPG11-211ENST00000558561 ADGRG1Q9Y653 693 aa7.69□□□□□ -1.18
SPG11-211ENST00000558561 KIF21AQ7Z4S6 1674 aa7.68□□□□□ -1.18
SPG11-211ENST00000558561 LSM11P83369 360 aaKnown RBP eCLIP7.68□□□□□ -1.18
SPG11-211ENST00000558561 ANKRD13DQ6ZTN6 518 aa7.68□□□□□ -1.18
SPG11-211ENST00000558561 TOP2AP11388 1531 aaKnown RBP7.68□□□□□ -1.18
SPG11-211ENST00000558561 SMAPO00193 183 aa7.67□□□□□ -1.18
SPG11-211ENST00000558561 TRIM66O15016 1216 aa7.67□□□□□ -1.18
SPG11-211ENST00000558561 PACS2Q86VP3 889 aa7.67□□□□□ -1.18
SPG11-211ENST00000558561 PHOX2BQ99453 314 aa7.67□□□□□ -1.18
SPG11-211ENST00000558561 SLC4A5Q9BY07 1137 aa7.67□□□□□ -1.18
SPG11-211ENST00000558561 KRTAP3-3Q9BYR6 98 aa7.67□□□□□ -1.18
SPG11-211ENST00000558561 KRTAP3-2Q9BYR7 98 aa7.67□□□□□ -1.18
SPG11-211ENST00000558561 NUDT18Q6ZVK8 323 aa7.66□□□□□ -1.18
SPG11-211ENST00000558561 TATDN2Q93075 761 aa7.66□□□□□ -1.18
SPG11-211ENST00000558561 ONECUT3O60422 494 aaPredicted RBP7.65□□□□□ -1.18
SPG11-211ENST00000558561 OATP04181 439 aa7.65□□□□□ -1.18
SPG11-211ENST00000558561 METTL3Q86U44 580 aaKnown RBP7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms