RNA–Protein interactions for RNA: ENST00000558138.1

SPG11-207, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5

Gene SPG11, Length 750 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-207ENST00000558138 ERBINQ96RT1 1412 aa13.63□□□□□ -0.23
SPG11-207ENST00000558138 C3P01024 1663 aa13.63□□□□□ -0.23
SPG11-207ENST00000558138 KDM5DQ9BY66 1539 aa13.62□□□□□ -0.23
SPG11-207ENST00000558138 ZMYM3Q14202 1370 aa13.61□□□□□ -0.23
SPG11-207ENST00000558138 MROH2AA6NES4 1674 aa13.61□□□□□ -0.23
SPG11-207ENST00000558138 ADGRL2O95490 1459 aa13.61□□□□□ -0.23
SPG11-207ENST00000558138 KANK1Q14678 1352 aa13.6□□□□□ -0.23
SPG11-207ENST00000558138 NCOA1Q15788 1441 aa13.6□□□□□ -0.23
SPG11-207ENST00000558138 RRBP1Q9P2E9 1410 aaKnown RBP13.6□□□□□ -0.23
SPG11-207ENST00000558138 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.59□□□□□ -0.23
SPG11-207ENST00000558138 UHRF1BP1Q6BDS2 1440 aa13.59□□□□□ -0.23
SPG11-207ENST00000558138 RNF17Q9BXT8 1623 aaKnown RBP13.59□□□□□ -0.23
SPG11-207ENST00000558138 PREX1Q8TCU6 1659 aa13.58□□□□□ -0.24
SPG11-207ENST00000558138 ANKRD50Q9ULJ7 1429 aa13.57□□□□□ -0.24
SPG11-207ENST00000558138 FAM135AQ9P2D6 1515 aa13.57□□□□□ -0.24
SPG11-207ENST00000558138 ZC3H13Q5T200 1668 aaKnown RBP13.56□□□□□ -0.24
SPG11-207ENST00000558138 PTPRKQ15262 1439 aa13.56□□□□□ -0.24
SPG11-207ENST00000558138 CEP152O94986 1710 aa13.56□□□□□ -0.24
SPG11-207ENST00000558138 ROCK1Q13464 1354 aa13.56□□□□□ -0.24
SPG11-207ENST00000558138 HSPA2P54652 639 aa13.55□□□□□ -0.24
SPG11-207ENST00000558138 LMTK3Q96Q04 1460 aa13.55□□□□□ -0.24
SPG11-207ENST00000558138 ABCC3O15438 1527 aa13.54□□□□□ -0.24
SPG11-207ENST00000558138 NPATQ14207 1427 aa13.54□□□□□ -0.24
SPG11-207ENST00000558138 PRDM15P57071 1507 aaPredicted RBP13.54□□□□□ -0.24
SPG11-207ENST00000558138 MROH1Q8NDA8 1641 aa13.53□□□□□ -0.24
SPG11-207ENST00000558138 SETD1BQ9UPS6 1966 aaKnown RBP13.52□□□□□ -0.24
SPG11-207ENST00000558138 PZPP20742 1482 aa13.52□□□□□ -0.25
SPG11-207ENST00000558138 CAMSAP1Q5T5Y3 1602 aa13.52□□□□□ -0.25
SPG11-207ENST00000558138 DEPDC5O75140 1603 aa13.51□□□□□ -0.25
SPG11-207ENST00000558138 TNRQ92752 1358 aa13.51□□□□□ -0.25
SPG11-207ENST00000558138 FBXO31Q5XUX0 539 aaPredicted RBP13.51□□□□□ -0.25
SPG11-207ENST00000558138 MYO3AQ8NEV4 1616 aa13.5□□□□□ -0.25
SPG11-207ENST00000558138 CFAP65Q6ZU64 1925 aaKnown RBP13.49□□□□□ -0.25
SPG11-207ENST00000558138 GCC2Q8IWJ2 1684 aa13.47□□□□□ -0.25
SPG11-207ENST00000558138 NUP155O75694 1391 aa13.46□□□□□ -0.25
SPG11-207ENST00000558138 UNC13BO14795 1591 aa13.46□□□□□ -0.25
SPG11-207ENST00000558138 CEP170BQ9Y4F5 1589 aaPredicted RBP13.46□□□□□ -0.25
SPG11-207ENST00000558138 TRIM52Q96A61 297 aa13.46□□□□□ -0.25
SPG11-207ENST00000558138 ERVK-7P63135 1459 aa13.45□□□□□ -0.26
SPG11-207ENST00000558138 STAG3Q9UJ98 1225 aa13.45□□□□□ -0.26
SPG11-207ENST00000558138 ZNF142P52746 1687 aaPredicted RBP13.44□□□□□ -0.26
SPG11-207ENST00000558138 A2ML1A8K2U0 1454 aa13.44□□□□□ -0.26
SPG11-207ENST00000558138 EFCAB6Q5THR3 1501 aa13.44□□□□□ -0.26
SPG11-207ENST00000558138 LMTK2Q8IWU2 1503 aa13.44□□□□□ -0.26
SPG11-207ENST00000558138 HFM1A2PYH4 1435 aa13.43□□□□□ -0.26
SPG11-207ENST00000558138 NAIPQ13075 1403 aa13.43□□□□□ -0.26
SPG11-207ENST00000558138 ARHGAP31Q2M1Z3 1444 aa13.43□□□□□ -0.26
SPG11-207ENST00000558138 SPATA31D1Q6ZQQ2 1576 aa13.43□□□□□ -0.26
SPG11-207ENST00000558138 VWDEQ8N2E2 1590 aa13.43□□□□□ -0.26
SPG11-207ENST00000558138 NLRP1Q9C000 1473 aa13.42□□□□□ -0.26
SPG11-207ENST00000558138 TET3O43151 1660 aa13.42□□□□□ -0.26
SPG11-207ENST00000558138 DMRT2Q9Y5R5 561 aa13.41□□□□□ -0.26
SPG11-207ENST00000558138 IQGAP3Q86VI3 1631 aa13.41□□□□□ -0.26
SPG11-207ENST00000558138 UGGT1Q9NYU2 1555 aa13.41□□□□□ -0.26
SPG11-207ENST00000558138 CHGAP10645 457 aaKnown RBP13.39□□□□□ -0.27
SPG11-207ENST00000558138 THEMISQ8N1K5 641 aaPredicted RBP13.39□□□□□ -0.27
SPG11-207ENST00000558138 NCKAP5LQ9HCH0 1330 aa13.39□□□□□ -0.27
SPG11-207ENST00000558138 RPRD2Q5VT52 1461 aaKnown RBP13.38□□□□□ -0.27
SPG11-207ENST00000558138 PKD2Q13563 968 aa13.36□□□□□ -0.27
SPG11-207ENST00000558138 ANKLE2Q86XL3 938 aa13.36□□□□□ -0.27
SPG11-207ENST00000558138 SLC4A1APQ9BWU0 796 aaKnown RBP13.36□□□□□ -0.27
SPG11-207ENST00000558138 E9PCH4 1651 aa13.36□□□□□ -0.27
SPG11-207ENST00000558138 PLA2R1Q13018 1463 aa13.36□□□□□ -0.27
SPG11-207ENST00000558138 STRCQ7RTU9 1775 aa13.35□□□□□ -0.27
SPG11-207ENST00000558138 SETD5Q9C0A6 1442 aa13.35□□□□□ -0.27
SPG11-207ENST00000558138 PIK3C2BO00750 1634 aa13.35□□□□□ -0.27
SPG11-207ENST00000558138 SYNMO15061 1565 aa13.34□□□□□ -0.27
SPG11-207ENST00000558138 SLC52A1Q9NWF4 448 aa13.34□□□□□ -0.27
SPG11-207ENST00000558138 POLR1AO95602 1720 aaPredicted RBP13.33□□□□□ -0.27
SPG11-207ENST00000558138 NOS1P29475 1434 aa13.33□□□□□ -0.28
SPG11-207ENST00000558138 IDI1Q13907 227 aa13.33□□□□□ -0.28
SPG11-207ENST00000558138 EID1Q9Y6B2 187 aa13.33□□□□□ -0.28
SPG11-207ENST00000558138 UBR1Q8IWV7 1749 aa13.33□□□□□ -0.28
SPG11-207ENST00000558138 BCANQ96GW7 911 aa13.32□□□□□ -0.28
SPG11-207ENST00000558138 PTPRTO14522 1441 aa13.31□□□□□ -0.28
SPG11-207ENST00000558138 SPHKAPQ2M3C7 1700 aa13.31□□□□□ -0.28
SPG11-207ENST00000558138 ADGRB3O60242 1522 aa13.31□□□□□ -0.28
SPG11-207ENST00000558138 PPP1R15AO75807 674 aaPredicted RBP13.31□□□□□ -0.28
SPG11-207ENST00000558138 ACIN1Q9UKV3 1341 aaKnown RBP13.31□□□□□ -0.28
SPG11-207ENST00000558138 TXNDC2Q86VQ3 553 aa13.3□□□□□ -0.28
SPG11-207ENST00000558138 RAB3GAP2Q9H2M9 1393 aa13.3□□□□□ -0.28
SPG11-207ENST00000558138 ZNF326Q5BKZ1 582 aaKnown RBP13.28□□□□□ -0.28
SPG11-207ENST00000558138 SENP3Q9H4L4 574 aaPredicted RBP13.28□□□□□ -0.28
SPG11-207ENST00000558138 NPHP4O75161 1426 aaPredicted RBP13.28□□□□□ -0.28
SPG11-207ENST00000558138 SCAF11Q99590 1463 aaKnown RBP13.28□□□□□ -0.28
SPG11-207ENST00000558138 HDGFP51858 240 aaKnown RBP13.27□□□□□ -0.29
SPG11-207ENST00000558138 FOXD1Q16676 465 aa13.27□□□□□ -0.29
SPG11-207ENST00000558138 MPHOSPH9Q99550 1183 aa13.27□□□□□ -0.29
SPG11-207ENST00000558138 TMEM2Q9UHN6 1383 aa13.27□□□□□ -0.29
SPG11-207ENST00000558138 KDM5AP29375 1690 aaKnown RBP13.26□□□□□ -0.29
SPG11-207ENST00000558138 IQGAP1P46940 1657 aa13.26□□□□□ -0.29
SPG11-207ENST00000558138 MYO5BQ9ULV0 1848 aa13.25□□□□□ -0.29
SPG11-207ENST00000558138 NEURL4Q96JN8 1562 aa13.25□□□□□ -0.29
SPG11-207ENST00000558138 SLIT1O75093 1534 aa13.25□□□□□ -0.29
SPG11-207ENST00000558138 TRPM2O94759 1503 aa13.24□□□□□ -0.29
SPG11-207ENST00000558138 NUTM2DQ5VT03 806 aaPredicted RBP13.24□□□□□ -0.29
SPG11-207ENST00000558138 RIMS2Q9UQ26 1411 aa13.23□□□□□ -0.29
SPG11-207ENST00000558138 ZNF335Q9H4Z2 1342 aaPredicted RBP13.23□□□□□ -0.29
SPG11-207ENST00000558138 LTKP29376 864 aa13.23□□□□□ -0.29
SPG11-207ENST00000558138 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms