RNA–Protein interactions for RNA: ENST00000557352.1

VRK1-207, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 599 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-207ENST00000557352 PDIA6Q15084 440 aa11.99□□□□□ -0.49
VRK1-207ENST00000557352 ARIH1Q9Y4X5 557 aaPredicted RBP11.99□□□□□ -0.49
VRK1-207ENST00000557352 PPP1R3GB7ZBB8 358 aa11.98□□□□□ -0.49
VRK1-207ENST00000557352 COL9A1P20849 921 aa11.98□□□□□ -0.49
VRK1-207ENST00000557352 PLCB2Q00722 1185 aa11.97□□□□□ -0.49
VRK1-207ENST00000557352 DDX12PQ92771 950 aa11.97□□□□□ -0.49
VRK1-207ENST00000557352 SPDYE16A6NNV3 312 aaPredicted RBP11.96□□□□□ -0.49
VRK1-207ENST00000557352 EPAS1Q99814 870 aa11.96□□□□□ -0.49
VRK1-207ENST00000557352 PROX2Q3B8N5 592 aa11.93□□□□□ -0.5
VRK1-207ENST00000557352 C6orf132Q5T0Z8 1188 aa11.93□□□□□ -0.5
VRK1-207ENST00000557352 MRPL50Q8N5N7 158 aaKnown RBP11.92□□□□□ -0.5
VRK1-207ENST00000557352 PLA2G2EQ9NZK7 142 aa11.91□□□□□ -0.5
VRK1-207ENST00000557352 RABGEF1Q9UJ41 708 aa11.9□□□□□ -0.5
VRK1-207ENST00000557352 NBR1Q14596 966 aa11.89□□□□□ -0.51
VRK1-207ENST00000557352 RBM33Q96EV2 1170 aaKnown RBP11.89□□□□□ -0.51
VRK1-207ENST00000557352 NBPF3Q9H094 633 aa11.89□□□□□ -0.51
VRK1-207ENST00000557352 THSD4Q6ZMP0 1018 aa11.88□□□□□ -0.51
VRK1-207ENST00000557352 PTPN5P54829 565 aa11.87□□□□□ -0.51
VRK1-207ENST00000557352 WNT2BQ93097 391 aa11.87□□□□□ -0.51
VRK1-207ENST00000557352 GOLGA8CPA6NN73 597 aa11.86□□□□□ -0.51
VRK1-207ENST00000557352 KCNV2Q8TDN2 545 aa11.86□□□□□ -0.51
VRK1-207ENST00000557352 GRXCR2A6NFK2 248 aa11.85□□□□□ -0.51
VRK1-207ENST00000557352 EN1Q05925 392 aaPredicted RBP11.85□□□□□ -0.51
VRK1-207ENST00000557352 ARHGEF1Q92888 912 aaKnown RBP11.84□□□□□ -0.51
VRK1-207ENST00000557352 KIAA1468Q9P260 1216 aa11.84□□□□□ -0.51
VRK1-207ENST00000557352 MAP3K7O43318 606 aa11.83□□□□□ -0.52
VRK1-207ENST00000557352 ONECUT3O60422 494 aaPredicted RBP11.83□□□□□ -0.52
VRK1-207ENST00000557352 PRIM1P49642 420 aaKnown RBP11.82□□□□□ -0.52
VRK1-207ENST00000557352 TSR1Q2NL82 804 aaKnown RBP11.82□□□□□ -0.52
VRK1-207ENST00000557352 TRIM6-TRIM34B2RNG4 842 aa11.8□□□□□ -0.52
VRK1-207ENST00000557352 LAPTM4BQ86VI4 370 aa11.8□□□□□ -0.52
VRK1-207ENST00000557352 OSBPP22059 807 aa11.79□□□□□ -0.52
VRK1-207ENST00000557352 HAP1P54257 671 aaPredicted RBP11.77□□□□□ -0.53
VRK1-207ENST00000557352 SEPT9Q9UHD8 586 aaPredicted RBP11.77□□□□□ -0.53
VRK1-207ENST00000557352 P3H3Q8IVL6 736 aa11.76□□□□□ -0.53
VRK1-207ENST00000557352 ANKK1Q8NFD2 765 aa11.76□□□□□ -0.53
VRK1-207ENST00000557352 ZFRQ96KR1 1074 aaKnown RBP11.76□□□□□ -0.53
VRK1-207ENST00000557352 TSKSQ9UJT2 592 aa11.76□□□□□ -0.53
VRK1-207ENST00000557352 BCAMP50895 628 aa11.74□□□□□ -0.53
VRK1-207ENST00000557352 SOWAHBA6NEL2 793 aa11.73□□□□□ -0.53
VRK1-207ENST00000557352 MLLT3P42568 568 aaPredicted RBP11.73□□□□□ -0.53
VRK1-207ENST00000557352 FAM98CQ17RN3 349 aaKnown RBP11.71□□□□□ -0.53
VRK1-207ENST00000557352 CDHR5Q9HBB8 845 aa11.71□□□□□ -0.53
VRK1-207ENST00000557352 IFFO2Q5TF58 517 aa11.7□□□□□ -0.54
VRK1-207ENST00000557352 PACS2Q86VP3 889 aa11.7□□□□□ -0.54
VRK1-207ENST00000557352 CERKQ8TCT0 537 aa11.7□□□□□ -0.54
VRK1-207ENST00000557352 CDCA7LQ96GN5 454 aa11.7□□□□□ -0.54
VRK1-207ENST00000557352 FAM198AQ9UFP1 575 aa11.7□□□□□ -0.54
VRK1-207ENST00000557352 PRSS12P56730 875 aa11.69□□□□□ -0.54
VRK1-207ENST00000557352 C3orf80F5H4A9 247 aa11.67□□□□□ -0.54
VRK1-207ENST00000557352 KDM2AQ9Y2K7 1162 aa11.67□□□□□ -0.54
VRK1-207ENST00000557352 WBP1LQ9NX94 342 aa11.66□□□□□ -0.54
VRK1-207ENST00000557352 SEMA3EO15041 775 aa11.65□□□□□ -0.54
VRK1-207ENST00000557352 SMAPO00193 183 aa11.64□□□□□ -0.55
VRK1-207ENST00000557352 NPDC1Q9NQX5 325 aaPredicted RBP11.64□□□□□ -0.55
VRK1-207ENST00000557352 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.63□□□□□ -0.55
VRK1-207ENST00000557352 ITGBL1O95965 494 aaPredicted RBP11.62□□□□□ -0.55
VRK1-207ENST00000557352 NYAP1Q6ZVC0 841 aa11.62□□□□□ -0.55
VRK1-207ENST00000557352 LRCH3Q96II8 777 aa11.62□□□□□ -0.55
VRK1-207ENST00000557352 TATDN2Q93075 761 aa11.61□□□□□ -0.55
VRK1-207ENST00000557352 RBM27Q9P2N5 1060 aaKnown RBP11.61□□□□□ -0.55
VRK1-207ENST00000557352 TSR3Q9UJK0 312 aaKnown RBP11.61□□□□□ -0.55
VRK1-207ENST00000557352 TTC13Q8NBP0 860 aa11.6□□□□□ -0.55
VRK1-207ENST00000557352 HPS5Q9UPZ3 1129 aa11.6□□□□□ -0.55
VRK1-207ENST00000557352 A0A0G2JS52 829 aa11.59□□□□□ -0.55
VRK1-207ENST00000557352 NBPF26B4DH59 902 aa11.58□□□□□ -0.56
VRK1-207ENST00000557352 VSIG10Q8N0Z9 540 aa11.58□□□□□ -0.56
VRK1-207ENST00000557352 PNMA3Q9UL41 463 aa11.58□□□□□ -0.56
VRK1-207ENST00000557352 PADI6Q6TGC4 694 aa11.57□□□□□ -0.56
VRK1-207ENST00000557352 SAMD7Q7Z3H4 446 aa11.57□□□□□ -0.56
VRK1-207ENST00000557352 NUDT18Q6ZVK8 323 aa11.56□□□□□ -0.56
VRK1-207ENST00000557352 TESPA1A2RU30 521 aaPredicted RBP11.55□□□□□ -0.56
VRK1-207ENST00000557352 PTGDRQ13258 359 aa11.55□□□□□ -0.56
VRK1-207ENST00000557352 NUTM2FA1L443 756 aa11.53□□□□□ -0.56
VRK1-207ENST00000557352 PPP4CP60510 307 aa11.53□□□□□ -0.56
VRK1-207ENST00000557352 RGS20O76081 388 aa11.51□□□□□ -0.57
VRK1-207ENST00000557352 KCNC4Q03721 635 aa11.49□□□□□ -0.57
VRK1-207ENST00000557352 SMYD5Q6GMV2 418 aa11.49□□□□□ -0.57
VRK1-207ENST00000557352 RBM26Q5T8P6 1007 aaKnown RBP11.48□□□□□ -0.57
VRK1-207ENST00000557352 EYA1Q99502 592 aa11.48□□□□□ -0.57
VRK1-207ENST00000557352 FCHSD2O94868 740 aa11.46□□□□□ -0.57
VRK1-207ENST00000557352 TJAP1Q5JTD0 557 aa11.45□□□□□ -0.58
VRK1-207ENST00000557352 HDGFP51858 240 aaKnown RBP11.44□□□□□ -0.58
VRK1-207ENST00000557352 SWT1Q5T5J6 900 aaKnown RBP11.44□□□□□ -0.58
VRK1-207ENST00000557352 RNF40O75150 1001 aa11.42□□□□□ -0.58
VRK1-207ENST00000557352 ADGRG1Q9Y653 693 aa11.42□□□□□ -0.58
VRK1-207ENST00000557352 APLP1P51693 650 aa11.41□□□□□ -0.58
VRK1-207ENST00000557352 FAM161AQ3B820 660 aa11.4□□□□□ -0.58
VRK1-207ENST00000557352 RBM46Q8TBY0 533 aaKnown RBP11.4□□□□□ -0.58
VRK1-207ENST00000557352 MTRQ99707 1265 aa11.4□□□□□ -0.58
VRK1-207ENST00000557352 HIC1Q14526 733 aa11.39□□□□□ -0.59
VRK1-207ENST00000557352 SLF2Q8IX21 1173 aa11.38□□□□□ -0.59
VRK1-207ENST00000557352 GPR37O15354 613 aa11.37□□□□□ -0.59
VRK1-207ENST00000557352 IL21Q9HBE4 155 aa11.37□□□□□ -0.59
VRK1-207ENST00000557352 DNAJB2P25686 324 aa11.36□□□□□ -0.59
VRK1-207ENST00000557352 GNPATO15228 680 aa11.35□□□□□ -0.59
VRK1-207ENST00000557352 FECHP22830 423 aa11.35□□□□□ -0.59
VRK1-207ENST00000557352 ZNF516Q92618 1163 aa11.35□□□□□ -0.59
VRK1-207ENST00000557352 RCCD1A6NED2 376 aa11.34□□□□□ -0.59
VRK1-207ENST00000557352 NECTIN2Q92692 538 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms