RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 E2F4Q16254 413 aa12.03□□□□□ -0.48
SCFD1-217ENST00000555953 DDX12PQ92771 950 aa12.03□□□□□ -0.48
SCFD1-217ENST00000555953 EPAS1Q99814 870 aa12.02□□□□□ -0.49
SCFD1-217ENST00000555953 WDR70Q9NW82 654 aa12.01□□□□□ -0.49
SCFD1-217ENST00000555953 PROX2Q3B8N5 592 aa11.99□□□□□ -0.49
SCFD1-217ENST00000555953 C6orf132Q5T0Z8 1188 aa11.98□□□□□ -0.49
SCFD1-217ENST00000555953 RBM33Q96EV2 1170 aaKnown RBP11.98□□□□□ -0.49
SCFD1-217ENST00000555953 SPDYE16A6NNV3 312 aaPredicted RBP11.97□□□□□ -0.49
SCFD1-217ENST00000555953 ARIH1Q9Y4X5 557 aaPredicted RBP11.97□□□□□ -0.49
SCFD1-217ENST00000555953 MRPL50Q8N5N7 158 aaKnown RBP11.96□□□□□ -0.49
SCFD1-217ENST00000555953 TSHZ2Q9NRE2 1034 aa11.96□□□□□ -0.49
SCFD1-217ENST00000555953 NBR1Q14596 966 aa11.95□□□□□ -0.5
SCFD1-217ENST00000555953 NBPF3Q9H094 633 aa11.95□□□□□ -0.5
SCFD1-217ENST00000555953 RABGEF1Q9UJ41 708 aa11.94□□□□□ -0.5
SCFD1-217ENST00000555953 GOLGA8CPA6NN73 597 aa11.92□□□□□ -0.5
SCFD1-217ENST00000555953 EN1Q05925 392 aaPredicted RBP11.92□□□□□ -0.5
SCFD1-217ENST00000555953 THSD4Q6ZMP0 1018 aa11.92□□□□□ -0.5
SCFD1-217ENST00000555953 PTPN5P54829 565 aa11.91□□□□□ -0.5
SCFD1-217ENST00000555953 WNT2BQ93097 391 aa11.91□□□□□ -0.5
SCFD1-217ENST00000555953 PLA2G2EQ9NZK7 142 aa11.91□□□□□ -0.5
SCFD1-217ENST00000555953 TSR1Q2NL82 804 aaKnown RBP11.9□□□□□ -0.5
SCFD1-217ENST00000555953 MAP3K7O43318 606 aa11.89□□□□□ -0.51
SCFD1-217ENST00000555953 PRIM1P49642 420 aaKnown RBP11.89□□□□□ -0.51
SCFD1-217ENST00000555953 KIAA1468Q9P260 1216 aa11.89□□□□□ -0.51
SCFD1-217ENST00000555953 GRXCR2A6NFK2 248 aa11.87□□□□□ -0.51
SCFD1-217ENST00000555953 TRIM6-TRIM34B2RNG4 842 aa11.87□□□□□ -0.51
SCFD1-217ENST00000555953 ONECUT3O60422 494 aaPredicted RBP11.86□□□□□ -0.51
SCFD1-217ENST00000555953 LAPTM4BQ86VI4 370 aa11.84□□□□□ -0.51
SCFD1-217ENST00000555953 SEPT9Q9UHD8 586 aaPredicted RBP11.84□□□□□ -0.51
SCFD1-217ENST00000555953 OSBPP22059 807 aa11.82□□□□□ -0.52
SCFD1-217ENST00000555953 ANKK1Q8NFD2 765 aa11.82□□□□□ -0.52
SCFD1-217ENST00000555953 TSKSQ9UJT2 592 aa11.81□□□□□ -0.52
SCFD1-217ENST00000555953 KCNV2Q8TDN2 545 aa11.8□□□□□ -0.52
SCFD1-217ENST00000555953 ZFRQ96KR1 1074 aaKnown RBP11.8□□□□□ -0.52
SCFD1-217ENST00000555953 BCAMP50895 628 aa11.79□□□□□ -0.52
SCFD1-217ENST00000555953 CDHR5Q9HBB8 845 aa11.78□□□□□ -0.52
SCFD1-217ENST00000555953 FAM98CQ17RN3 349 aaKnown RBP11.77□□□□□ -0.53
SCFD1-217ENST00000555953 ARHGEF1Q92888 912 aaKnown RBP11.77□□□□□ -0.53
SCFD1-217ENST00000555953 CDCA7LQ96GN5 454 aa11.77□□□□□ -0.53
SCFD1-217ENST00000555953 FAM198AQ9UFP1 575 aa11.77□□□□□ -0.53
SCFD1-217ENST00000555953 SOWAHBA6NEL2 793 aa11.76□□□□□ -0.53
SCFD1-217ENST00000555953 PRSS12P56730 875 aa11.76□□□□□ -0.53
SCFD1-217ENST00000555953 PACS2Q86VP3 889 aa11.75□□□□□ -0.53
SCFD1-217ENST00000555953 CERKQ8TCT0 537 aa11.74□□□□□ -0.53
SCFD1-217ENST00000555953 C3orf80F5H4A9 247 aa11.72□□□□□ -0.53
SCFD1-217ENST00000555953 MLLT3P42568 568 aaPredicted RBP11.72□□□□□ -0.53
SCFD1-217ENST00000555953 PLCB2Q00722 1185 aa11.72□□□□□ -0.53
SCFD1-217ENST00000555953 SMAPO00193 183 aa11.71□□□□□ -0.53
SCFD1-217ENST00000555953 WBP1LQ9NX94 342 aa11.7□□□□□ -0.54
SCFD1-217ENST00000555953 NPDC1Q9NQX5 325 aaPredicted RBP11.69□□□□□ -0.54
SCFD1-217ENST00000555953 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.69□□□□□ -0.54
SCFD1-217ENST00000555953 IFFO2Q5TF58 517 aa11.68□□□□□ -0.54
SCFD1-217ENST00000555953 LRCH3Q96II8 777 aa11.68□□□□□ -0.54
SCFD1-217ENST00000555953 TATDN2Q93075 761 aa11.67□□□□□ -0.54
SCFD1-217ENST00000555953 RBM27Q9P2N5 1060 aaKnown RBP11.67□□□□□ -0.54
SCFD1-217ENST00000555953 NBPF26B4DH59 902 aa11.66□□□□□ -0.54
SCFD1-217ENST00000555953 PNMA3Q9UL41 463 aa11.66□□□□□ -0.54
SCFD1-217ENST00000555953 HPS5Q9UPZ3 1129 aa11.66□□□□□ -0.54
SCFD1-217ENST00000555953 TSR3Q9UJK0 312 aaKnown RBP11.65□□□□□ -0.54
SCFD1-217ENST00000555953 PADI6Q6TGC4 694 aa11.64□□□□□ -0.55
SCFD1-217ENST00000555953 NYAP1Q6ZVC0 841 aa11.64□□□□□ -0.55
SCFD1-217ENST00000555953 P3H3Q8IVL6 736 aa11.64□□□□□ -0.55
SCFD1-217ENST00000555953 TTC13Q8NBP0 860 aa11.64□□□□□ -0.55
SCFD1-217ENST00000555953 NUDT18Q6ZVK8 323 aa11.63□□□□□ -0.55
SCFD1-217ENST00000555953 SAMD7Q7Z3H4 446 aa11.63□□□□□ -0.55
SCFD1-217ENST00000555953 ITGBL1O95965 494 aaPredicted RBP11.62□□□□□ -0.55
SCFD1-217ENST00000555953 A0A0G2JS52 829 aa11.6□□□□□ -0.55
SCFD1-217ENST00000555953 SEMA3EO15041 775 aa11.59□□□□□ -0.55
SCFD1-217ENST00000555953 PPP4CP60510 307 aa11.57□□□□□ -0.56
SCFD1-217ENST00000555953 PTGDRQ13258 359 aa11.56□□□□□ -0.56
SCFD1-217ENST00000555953 NUTM2FA1L443 756 aa11.53□□□□□ -0.56
SCFD1-217ENST00000555953 HAP1P54257 671 aaPredicted RBP11.53□□□□□ -0.56
SCFD1-217ENST00000555953 KCNC4Q03721 635 aa11.53□□□□□ -0.56
SCFD1-217ENST00000555953 EYA1Q99502 592 aa11.53□□□□□ -0.56
SCFD1-217ENST00000555953 RNF40O75150 1001 aa11.52□□□□□ -0.57
SCFD1-217ENST00000555953 SWT1Q5T5J6 900 aaKnown RBP11.51□□□□□ -0.57
SCFD1-217ENST00000555953 RGS20O76081 388 aa11.5□□□□□ -0.57
SCFD1-217ENST00000555953 HDGFP51858 240 aaKnown RBP11.5□□□□□ -0.57
SCFD1-217ENST00000555953 TESPA1A2RU30 521 aaPredicted RBP11.48□□□□□ -0.57
SCFD1-217ENST00000555953 KDM2AQ9Y2K7 1162 aa11.48□□□□□ -0.57
SCFD1-217ENST00000555953 TJAP1Q5JTD0 557 aa11.47□□□□□ -0.57
SCFD1-217ENST00000555953 ADGRG1Q9Y653 693 aa11.47□□□□□ -0.57
SCFD1-217ENST00000555953 APLP1P51693 650 aa11.46□□□□□ -0.57
SCFD1-217ENST00000555953 FCHSD2O94868 740 aa11.45□□□□□ -0.58
SCFD1-217ENST00000555953 FAM161AQ3B820 660 aa11.45□□□□□ -0.58
SCFD1-217ENST00000555953 SLF2Q8IX21 1173 aa11.45□□□□□ -0.58
SCFD1-217ENST00000555953 MTRQ99707 1265 aa11.45□□□□□ -0.58
SCFD1-217ENST00000555953 RBM26Q5T8P6 1007 aaKnown RBP11.44□□□□□ -0.58
SCFD1-217ENST00000555953 RBM46Q8TBY0 533 aaKnown RBP11.43□□□□□ -0.58
SCFD1-217ENST00000555953 DNAJB2P25686 324 aa11.42□□□□□ -0.58
SCFD1-217ENST00000555953 IL21Q9HBE4 155 aa11.41□□□□□ -0.58
SCFD1-217ENST00000555953 NECTIN2Q92692 538 aa11.4□□□□□ -0.58
SCFD1-217ENST00000555953 TMEM134Q9H6X4 195 aa11.4□□□□□ -0.58
SCFD1-217ENST00000555953 RCCD1A6NED2 376 aa11.39□□□□□ -0.59
SCFD1-217ENST00000555953 ZNF516Q92618 1163 aa11.39□□□□□ -0.59
SCFD1-217ENST00000555953 SLC4A3P48751 1232 aa11.38□□□□□ -0.59
SCFD1-217ENST00000555953 SMYD5Q6GMV2 418 aa11.38□□□□□ -0.59
SCFD1-217ENST00000555953 HIC1Q14526 733 aa11.37□□□□□ -0.59
SCFD1-217ENST00000555953 GPR37O15354 613 aa11.36□□□□□ -0.59
SCFD1-217ENST00000555953 COPS2P61201 443 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms