RNA–Protein interactions for RNA: ENST00000554514.1

ARHGEF40-203, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 2,928 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-203ENST00000554514 CCDC144AA2RUR9 1427 aa21.27■■□□□ 1
ARHGEF40-203ENST00000554514 CHD1O14646 1710 aa21.27■■□□□ 1
ARHGEF40-203ENST00000554514 ARHGEF12Q9NZN5 1544 aa21.27■□□□□ 0.99
ARHGEF40-203ENST00000554514 PREX2Q70Z35 1606 aa21.26■□□□□ 0.99
ARHGEF40-203ENST00000554514 ARID4BQ4LE39 1312 aaPredicted RBP21.26■□□□□ 0.99
ARHGEF40-203ENST00000554514 TTC37Q6PGP7 1564 aa21.26■□□□□ 0.99
ARHGEF40-203ENST00000554514 SALL2Q9Y467 1007 aaPredicted RBP21.25■□□□□ 0.99
ARHGEF40-203ENST00000554514 ERCC6L2Q5T890 1561 aa21.24■□□□□ 0.99
ARHGEF40-203ENST00000554514 RSPH4AQ5TD94 716 aa21.24■□□□□ 0.99
ARHGEF40-203ENST00000554514 PNISRQ8TF01 805 aaKnown RBP21.24■□□□□ 0.99
ARHGEF40-203ENST00000554514 ERICH6BQ5W0A0 696 aa21.22■□□□□ 0.99
ARHGEF40-203ENST00000554514 NUDCQ9Y266 331 aa21.21■□□□□ 0.99
ARHGEF40-203ENST00000554514 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.21■□□□□ 0.99
ARHGEF40-203ENST00000554514 PLEKHH2Q8IVE3 1493 aa21.2■□□□□ 0.98
ARHGEF40-203ENST00000554514 SMG6Q86US8 1419 aaKnown RBP21.17■□□□□ 0.98
ARHGEF40-203ENST00000554514 PRAG1Q86YV5 1406 aa21.17■□□□□ 0.98
ARHGEF40-203ENST00000554514 MYBBP1AQ9BQG0 1328 aaKnown RBP21.17■□□□□ 0.98
ARHGEF40-203ENST00000554514 MSH5O43196 834 aa21.16■□□□□ 0.98
ARHGEF40-203ENST00000554514 PLA2R1Q13018 1463 aa21.16■□□□□ 0.98
ARHGEF40-203ENST00000554514 CC2D1BQ5T0F9 858 aaKnown RBP21.14■□□□□ 0.97
ARHGEF40-203ENST00000554514 RALBP1Q15311 655 aa21.13■□□□□ 0.97
ARHGEF40-203ENST00000554514 A2MP01023 1474 aa21.13■□□□□ 0.97
ARHGEF40-203ENST00000554514 ABCC2Q92887 1545 aa21.12■□□□□ 0.97
ARHGEF40-203ENST00000554514 MYO5CQ9NQX4 1742 aa21.11■□□□□ 0.97
ARHGEF40-203ENST00000554514 TRPM1Q7Z4N2 1603 aa21.1■□□□□ 0.97
ARHGEF40-203ENST00000554514 KTN1Q86UP2 1357 aaKnown RBP21.1■□□□□ 0.97
ARHGEF40-203ENST00000554514 EFCAB2Q5VUJ9 269 aa21.09■□□□□ 0.97
ARHGEF40-203ENST00000554514 CCDC136Q96JN2 1154 aa21.09■□□□□ 0.97
ARHGEF40-203ENST00000554514 BRD4O60885 1362 aaPredicted RBP21.09■□□□□ 0.97
ARHGEF40-203ENST00000554514 DISP3Q9P2K9 1392 aa21.09■□□□□ 0.97
ARHGEF40-203ENST00000554514 BCL11AQ9H165 835 aa21.08■□□□□ 0.97
ARHGEF40-203ENST00000554514 UNC13BO14795 1591 aa21.08■□□□□ 0.96
ARHGEF40-203ENST00000554514 MYT1LQ9UL68 1186 aa21.08■□□□□ 0.96
ARHGEF40-203ENST00000554514 SHROOM2Q13796 1616 aa21.07■□□□□ 0.96
ARHGEF40-203ENST00000554514 AFAP1Q8N556 730 aa21.06■□□□□ 0.96
ARHGEF40-203ENST00000554514 ERICH6Q7L0X2 663 aa21.06■□□□□ 0.96
ARHGEF40-203ENST00000554514 PANK3Q9H999 370 aa21.06■□□□□ 0.96
ARHGEF40-203ENST00000554514 MAST1Q9Y2H9 1570 aa21.06■□□□□ 0.96
ARHGEF40-203ENST00000554514 NLRP13Q86W25 1043 aa21.05■□□□□ 0.96
ARHGEF40-203ENST00000554514 TRAPPC8Q9Y2L5 1435 aa21.05■□□□□ 0.96
ARHGEF40-203ENST00000554514 LRPPRCP42704 1394 aaKnown RBP21.04■□□□□ 0.96
ARHGEF40-203ENST00000554514 TESK2Q96S53 571 aa21.04■□□□□ 0.96
ARHGEF40-203ENST00000554514 DUOX2Q9NRD8 1548 aa21.04■□□□□ 0.96
ARHGEF40-203ENST00000554514 FANCIQ9NVI1 1328 aa21.03■□□□□ 0.96
ARHGEF40-203ENST00000554514 E9PCH4 1651 aa21.03■□□□□ 0.96
ARHGEF40-203ENST00000554514 PLCH2O75038 1416 aa21.03■□□□□ 0.96
ARHGEF40-203ENST00000554514 IQGAP3Q86VI3 1631 aa21.02■□□□□ 0.96
ARHGEF40-203ENST00000554514 PER1O15534 1290 aaPredicted RBP21.02■□□□□ 0.96
ARHGEF40-203ENST00000554514 PLXNC1O60486 1568 aa21.02■□□□□ 0.96
ARHGEF40-203ENST00000554514 TMF1P82094 1093 aa21.01■□□□□ 0.95
ARHGEF40-203ENST00000554514 SPAG9O60271 1321 aaKnown RBP21.01■□□□□ 0.95
ARHGEF40-203ENST00000554514 ERBINQ96RT1 1412 aa21.01■□□□□ 0.95
ARHGEF40-203ENST00000554514 ZCCHC11Q5TAX3 1644 aaKnown RBP21■□□□□ 0.95
ARHGEF40-203ENST00000554514 PARD3Q8TEW0 1356 aa21■□□□□ 0.95
ARHGEF40-203ENST00000554514 GPRASP1Q5JY77 1395 aa20.99■□□□□ 0.95
ARHGEF40-203ENST00000554514 RNF123Q5XPI4 1314 aa20.99■□□□□ 0.95
ARHGEF40-203ENST00000554514 COL17A1Q9UMD9 1497 aaPredicted RBP20.99■□□□□ 0.95
ARHGEF40-203ENST00000554514 CDCA7LQ96GN5 454 aa20.98■□□□□ 0.95
ARHGEF40-203ENST00000554514 PRDM15P57071 1507 aaPredicted RBP20.96■□□□□ 0.95
ARHGEF40-203ENST00000554514 RCAN3Q9UKA8 241 aa20.95■□□□□ 0.94
ARHGEF40-203ENST00000554514 RRP1P56182 461 aaKnown RBP20.94■□□□□ 0.94
ARHGEF40-203ENST00000554514 ABCC1P33527 1531 aa20.94■□□□□ 0.94
ARHGEF40-203ENST00000554514 EXOC6Q8TAG9 804 aa20.93■□□□□ 0.94
ARHGEF40-203ENST00000554514 EIF2AK4Q9P2K8 1649 aaKnown RBP20.91■□□□□ 0.94
ARHGEF40-203ENST00000554514 MAGI2Q86UL8 1455 aa20.91■□□□□ 0.94
ARHGEF40-203ENST00000554514 KIF3BO15066 747 aa20.9■□□□□ 0.94
ARHGEF40-203ENST00000554514 ATP10AO60312 1499 aa20.89■□□□□ 0.93
ARHGEF40-203ENST00000554514 PLIN1O60240 522 aa20.88■□□□□ 0.93
ARHGEF40-203ENST00000554514 KNSTRNQ9Y448 316 aa20.88■□□□□ 0.93
ARHGEF40-203ENST00000554514 LAMC1P11047 1609 aa20.86■□□□□ 0.93
ARHGEF40-203ENST00000554514 CLASP1Q7Z460 1538 aa20.85■□□□□ 0.93
ARHGEF40-203ENST00000554514 ADAMTS8Q9UP79 889 aa20.84■□□□□ 0.93
ARHGEF40-203ENST00000554514 WASHC2CQ9Y4E1 1318 aa20.84■□□□□ 0.93
ARHGEF40-203ENST00000554514 UHRF1BP1LA0JNW5 1464 aa20.84■□□□□ 0.93
ARHGEF40-203ENST00000554514 SCAPERQ9BY12 1400 aa20.83■□□□□ 0.93
ARHGEF40-203ENST00000554514 ZFYVE16Q7Z3T8 1539 aa20.83■□□□□ 0.92
ARHGEF40-203ENST00000554514 PDE3BQ13370 1112 aa20.83■□□□□ 0.92
ARHGEF40-203ENST00000554514 KANK1Q14678 1352 aa20.81■□□□□ 0.92
ARHGEF40-203ENST00000554514 FANCAO15360 1455 aa20.81■□□□□ 0.92
ARHGEF40-203ENST00000554514 WDR43Q15061 677 aaKnown RBP eCLIP20.81■□□□□ 0.92
ARHGEF40-203ENST00000554514 MADDQ8WXG6 1647 aa20.8■□□□□ 0.92
ARHGEF40-203ENST00000554514 PPP2R1AP30153 589 aa20.8■□□□□ 0.92
ARHGEF40-203ENST00000554514 RNF17Q9BXT8 1623 aaKnown RBP20.8■□□□□ 0.92
ARHGEF40-203ENST00000554514 CLTCL1P53675 1640 aa20.79■□□□□ 0.92
ARHGEF40-203ENST00000554514 CFAP70Q5T0N1 1121 aa20.79■□□□□ 0.92
ARHGEF40-203ENST00000554514 CHGAP10645 457 aaKnown RBP20.79■□□□□ 0.92
ARHGEF40-203ENST00000554514 WDR7Q9Y4E6 1490 aa20.79■□□□□ 0.92
ARHGEF40-203ENST00000554514 TRPM2O94759 1503 aa20.78■□□□□ 0.92
ARHGEF40-203ENST00000554514 RTEL1-TNFRSF6BF6WH68 1400 aa20.78■□□□□ 0.92
ARHGEF40-203ENST00000554514 SPHKAPQ2M3C7 1700 aa20.76■□□□□ 0.91
ARHGEF40-203ENST00000554514 BLMP54132 1417 aaPredicted RBP20.76■□□□□ 0.91
ARHGEF40-203ENST00000554514 UGGT1Q9NYU2 1555 aa20.76■□□□□ 0.91
ARHGEF40-203ENST00000554514 NPM2Q86SE8 214 aaKnown RBP20.76■□□□□ 0.91
ARHGEF40-203ENST00000554514 SCAF11Q99590 1463 aaKnown RBP20.76■□□□□ 0.91
ARHGEF40-203ENST00000554514 ATP7AQ04656 1500 aa20.76■□□□□ 0.91
ARHGEF40-203ENST00000554514 PAK3O75914 559 aaPredicted RBP20.76■□□□□ 0.91
ARHGEF40-203ENST00000554514 AMER1Q5JTC6 1135 aaPredicted RBP20.76■□□□□ 0.91
ARHGEF40-203ENST00000554514 ADGRL1O94910 1474 aa20.75■□□□□ 0.91
ARHGEF40-203ENST00000554514 CDCA8Q53HL2 280 aa20.75■□□□□ 0.91
ARHGEF40-203ENST00000554514 ANP32AP39687 249 aaKnown RBP20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms