RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 CNGB1Q14028 1251 aaPredicted RBP16.32■□□□□ 0.2
SHMT2-212ENST00000554467 ABCA9Q8IUA7 1624 aa16.32■□□□□ 0.2
SHMT2-212ENST00000554467 CCDC144AA2RUR9 1427 aa16.29■□□□□ 0.2
SHMT2-212ENST00000554467 KIF3BO15066 747 aa16.29■□□□□ 0.2
SHMT2-212ENST00000554467 PLA2R1Q13018 1463 aa16.29■□□□□ 0.2
SHMT2-212ENST00000554467 ZFYVE16Q7Z3T8 1539 aa16.29■□□□□ 0.2
SHMT2-212ENST00000554467 UNC13BO14795 1591 aa16.29■□□□□ 0.2
SHMT2-212ENST00000554467 ERBINQ96RT1 1412 aa16.28■□□□□ 0.2
SHMT2-212ENST00000554467 CD109Q6YHK3 1445 aa16.27■□□□□ 0.2
SHMT2-212ENST00000554467 CARD11Q9BXL7 1154 aa16.26■□□□□ 0.19
SHMT2-212ENST00000554467 ARAP3Q8WWN8 1544 aa16.26■□□□□ 0.19
SHMT2-212ENST00000554467 USP47Q96K76 1375 aa16.26■□□□□ 0.19
SHMT2-212ENST00000554467 CCDC7Q96M83 1385 aa16.25■□□□□ 0.19
SHMT2-212ENST00000554467 ATP7AQ04656 1500 aa16.25■□□□□ 0.19
SHMT2-212ENST00000554467 KIF7Q2M1P5 1343 aa16.25■□□□□ 0.19
SHMT2-212ENST00000554467 SPATA31E1Q6ZUB1 1445 aa16.25■□□□□ 0.19
SHMT2-212ENST00000554467 IQGAP3Q86VI3 1631 aa16.24■□□□□ 0.19
SHMT2-212ENST00000554467 RAPGEF3O95398 923 aa16.24■□□□□ 0.19
SHMT2-212ENST00000554467 RTEL1-TNFRSF6BF6WH68 1400 aa16.22■□□□□ 0.19
SHMT2-212ENST00000554467 NBPF1Q3BBV0 1214 aa16.22■□□□□ 0.19
SHMT2-212ENST00000554467 PRKCSHP14314 528 aaPredicted RBP16.2■□□□□ 0.18
SHMT2-212ENST00000554467 MAGI2Q86UL8 1455 aa16.2■□□□□ 0.18
SHMT2-212ENST00000554467 ST20-MTHFSA0A0A6YYL1 179 aa16.2■□□□□ 0.18
SHMT2-212ENST00000554467 INO80Q9ULG1 1556 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-212ENST00000554467 ROCK2O75116 1388 aaKnown RBP16.19■□□□□ 0.18
SHMT2-212ENST00000554467 BCANQ96GW7 911 aa16.19■□□□□ 0.18
SHMT2-212ENST00000554467 UHRF1BP1Q6BDS2 1440 aa16.18■□□□□ 0.18
SHMT2-212ENST00000554467 GGT6Q6P531 493 aa16.18■□□□□ 0.18
SHMT2-212ENST00000554467 A2MP01023 1474 aa16.18■□□□□ 0.18
SHMT2-212ENST00000554467 DHX29Q7Z478 1369 aaKnown RBP16.17■□□□□ 0.18
SHMT2-212ENST00000554467 CNTLNQ9NXG0 1405 aa16.17■□□□□ 0.18
SHMT2-212ENST00000554467 RALGAPBQ86X10 1494 aa16.17■□□□□ 0.18
SHMT2-212ENST00000554467 BCORL1Q5H9F3 1711 aa16.17■□□□□ 0.18
SHMT2-212ENST00000554467 CCDC184Q52MB2 194 aa16.17■□□□□ 0.18
SHMT2-212ENST00000554467 KIDINS220Q9ULH0 1771 aa16.16■□□□□ 0.18
SHMT2-212ENST00000554467 E9PCH4 1651 aa16.16■□□□□ 0.18
SHMT2-212ENST00000554467 ZNF518AQ6AHZ1 1483 aa16.16■□□□□ 0.18
SHMT2-212ENST00000554467 CCER2I3L3R5 266 aa16.16■□□□□ 0.18
SHMT2-212ENST00000554467 KDM5CP41229 1560 aa16.15■□□□□ 0.18
SHMT2-212ENST00000554467 KANK1Q14678 1352 aa16.15■□□□□ 0.18
SHMT2-212ENST00000554467 PRAG1Q86YV5 1406 aa16.14■□□□□ 0.17
SHMT2-212ENST00000554467 RIMBP3CA6NJZ7 1639 aa16.14■□□□□ 0.17
SHMT2-212ENST00000554467 RIMBP3BA6NNM3 1639 aa16.14■□□□□ 0.17
SHMT2-212ENST00000554467 RIMBP3Q9UFD9 1639 aa16.14■□□□□ 0.17
SHMT2-212ENST00000554467 POGZQ7Z3K3 1410 aa16.13■□□□□ 0.17
SHMT2-212ENST00000554467 ATP10AO60312 1499 aa16.13■□□□□ 0.17
SHMT2-212ENST00000554467 FAM69CQ0P6D2 419 aa16.13■□□□□ 0.17
SHMT2-212ENST00000554467 UGGT1Q9NYU2 1555 aa16.11■□□□□ 0.17
SHMT2-212ENST00000554467 CFAP65Q6ZU64 1925 aaKnown RBP16.11■□□□□ 0.17
SHMT2-212ENST00000554467 PRKRIP1Q9H875 184 aaPredicted RBP16.1■□□□□ 0.17
SHMT2-212ENST00000554467 DEPDC5O75140 1603 aa16.09■□□□□ 0.17
SHMT2-212ENST00000554467 CHGAP10645 457 aaKnown RBP16.09■□□□□ 0.17
SHMT2-212ENST00000554467 MROH1Q8NDA8 1641 aa16.09■□□□□ 0.17
SHMT2-212ENST00000554467 CLTCL1P53675 1640 aa16.07■□□□□ 0.16
SHMT2-212ENST00000554467 TRPM1Q7Z4N2 1603 aa16.07■□□□□ 0.16
SHMT2-212ENST00000554467 FAM9BQ8IZU0 186 aa16.06■□□□□ 0.16
SHMT2-212ENST00000554467 SENP3Q9H4L4 574 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-212ENST00000554467 TET3O43151 1660 aa16.06■□□□□ 0.16
SHMT2-212ENST00000554467 SPHKAPQ2M3C7 1700 aa16.06■□□□□ 0.16
SHMT2-212ENST00000554467 FRMPD1Q5SYB0 1578 aa16.05■□□□□ 0.16
SHMT2-212ENST00000554467 WASHC2CQ9Y4E1 1318 aa16.05■□□□□ 0.16
SHMT2-212ENST00000554467 TRPM2O94759 1503 aa16.05■□□□□ 0.16
SHMT2-212ENST00000554467 HNRNPUQ00839 825 aaKnown RBP eCLIP16.04■□□□□ 0.16
SHMT2-212ENST00000554467 MRS2Q9HD23 443 aa16.04■□□□□ 0.16
SHMT2-212ENST00000554467 PRDM15P57071 1507 aaPredicted RBP16.04■□□□□ 0.16
SHMT2-212ENST00000554467 CFAP74Q9C0B2 1584 aa16.04■□□□□ 0.16
SHMT2-212ENST00000554467 HECW2Q9P2P5 1572 aa16.04■□□□□ 0.16
SHMT2-212ENST00000554467 TSPOAP1O95153 1857 aa16.04■□□□□ 0.16
SHMT2-212ENST00000554467 ABCA6Q8N139 1617 aa16.04■□□□□ 0.16
SHMT2-212ENST00000554467 PTPRTO14522 1441 aa16.04■□□□□ 0.16
SHMT2-212ENST00000554467 VWDEQ8N2E2 1590 aa16.04■□□□□ 0.16
SHMT2-212ENST00000554467 SENP3-EIF4A1A0A087X0R7 540 aa16.04■□□□□ 0.16
SHMT2-212ENST00000554467 CEP152O94986 1710 aa16.04■□□□□ 0.16
SHMT2-212ENST00000554467 YEATS2Q9ULM3 1422 aa16.03■□□□□ 0.16
SHMT2-212ENST00000554467 POLR1AO95602 1720 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-212ENST00000554467 MLH3Q9UHC1 1453 aa16.03■□□□□ 0.16
SHMT2-212ENST00000554467 RBM19Q9Y4C8 960 aaKnown RBP16.03■□□□□ 0.16
SHMT2-212ENST00000554467 NEO1Q92859 1461 aa16.02■□□□□ 0.16
SHMT2-212ENST00000554467 PPRC1Q5VV67 1664 aaKnown RBP16.02■□□□□ 0.15
SHMT2-212ENST00000554467 EIF2AK4Q9P2K8 1649 aaKnown RBP16.02■□□□□ 0.15
SHMT2-212ENST00000554467 MSH5O43196 834 aa16.01■□□□□ 0.15
SHMT2-212ENST00000554467 NUTM2DQ5VT03 806 aaPredicted RBP16■□□□□ 0.15
SHMT2-212ENST00000554467 DISP3Q9P2K9 1392 aa16■□□□□ 0.15
SHMT2-212ENST00000554467 EFCAB6Q5THR3 1501 aa15.99■□□□□ 0.15
SHMT2-212ENST00000554467 MAP3K4Q9Y6R4 1608 aa15.99■□□□□ 0.15
SHMT2-212ENST00000554467 ADGRF5Q8IZF2 1346 aa15.99■□□□□ 0.15
SHMT2-212ENST00000554467 FKBP8Q14318 412 aa15.99■□□□□ 0.15
SHMT2-212ENST00000554467 TESK2Q96S53 571 aa15.99■□□□□ 0.15
SHMT2-212ENST00000554467 GPRASP1Q5JY77 1395 aa15.98■□□□□ 0.15
SHMT2-212ENST00000554467 CFAP70Q5T0N1 1121 aa15.98■□□□□ 0.15
SHMT2-212ENST00000554467 NPATQ14207 1427 aa15.98■□□□□ 0.15
SHMT2-212ENST00000554467 DIP2CQ9Y2E4 1556 aa15.96■□□□□ 0.15
SHMT2-212ENST00000554467 MADDQ8WXG6 1647 aa15.96■□□□□ 0.14
SHMT2-212ENST00000554467 RICTORQ6R327 1708 aa15.95■□□□□ 0.14
SHMT2-212ENST00000554467 ARID4BQ4LE39 1312 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-212ENST00000554467 DIP2BQ9P265 1576 aa15.95■□□□□ 0.14
SHMT2-212ENST00000554467 RNF17Q9BXT8 1623 aaKnown RBP15.94■□□□□ 0.14
SHMT2-212ENST00000554467 MLECQ14165 292 aa15.94■□□□□ 0.14
SHMT2-212ENST00000554467 ABCC3O15438 1527 aa15.93■□□□□ 0.14
SHMT2-212ENST00000554467 MROH2AA6NES4 1674 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms