RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 BRD4O60885 1362 aaPredicted RBP6.41□□□□□ -1.38
LIMA1-214ENST00000552783 TSPY4P0CV99 314 aa6.4□□□□□ -1.38
LIMA1-214ENST00000552783 TSPY10P0CW01 314 aa6.4□□□□□ -1.38
LIMA1-214ENST00000552783 UBE2Q2Q8WVN8 375 aa6.4□□□□□ -1.38
LIMA1-214ENST00000552783 C8orf34Q49A92 452 aa6.4□□□□□ -1.38
LIMA1-214ENST00000552783 CC2D1BQ5T0F9 858 aaKnown RBP6.4□□□□□ -1.38
LIMA1-214ENST00000552783 ROCK1Q13464 1354 aa6.4□□□□□ -1.39
LIMA1-214ENST00000552783 IFT140Q96RY7 1462 aa6.4□□□□□ -1.39
LIMA1-214ENST00000552783 PLEKHD1A6NEE1 506 aa6.39□□□□□ -1.39
LIMA1-214ENST00000552783 SLC24A1O60721 1099 aa6.39□□□□□ -1.39
LIMA1-214ENST00000552783 KDM2BQ8NHM5 1336 aa6.39□□□□□ -1.39
LIMA1-214ENST00000552783 PER1O15534 1290 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-214ENST00000552783 DNMT1P26358 1616 aaKnown RBP6.39□□□□□ -1.39
LIMA1-214ENST00000552783 KIAA1107Q9UPP5 1409 aa6.39□□□□□ -1.39
LIMA1-214ENST00000552783 KIF14Q15058 1648 aa6.38□□□□□ -1.39
LIMA1-214ENST00000552783 RGS3P49796 1198 aa6.38□□□□□ -1.39
LIMA1-214ENST00000552783 NBPF1Q3BBV0 1214 aa6.38□□□□□ -1.39
LIMA1-214ENST00000552783 RALBP1Q15311 655 aa6.38□□□□□ -1.39
LIMA1-214ENST00000552783 NLRP13Q86W25 1043 aa6.38□□□□□ -1.39
LIMA1-214ENST00000552783 PARD3Q8TEW0 1356 aa6.38□□□□□ -1.39
LIMA1-214ENST00000552783 POGKQ9P215 609 aa6.37□□□□□ -1.39
LIMA1-214ENST00000552783 ARID4BQ4LE39 1312 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-214ENST00000552783 KIAA0586Q9BVV6 1533 aa6.37□□□□□ -1.39
LIMA1-214ENST00000552783 TARBP1Q13395 1621 aaKnown RBP6.37□□□□□ -1.39
LIMA1-214ENST00000552783 RALGAPBQ86X10 1494 aa6.36□□□□□ -1.39
LIMA1-214ENST00000552783 PRG4Q92954 1404 aaPredicted RBP6.36□□□□□ -1.39
LIMA1-214ENST00000552783 SEC24BO95487 1268 aa6.36□□□□□ -1.39
LIMA1-214ENST00000552783 DDRGK1Q96HY6 314 aa6.36□□□□□ -1.39
LIMA1-214ENST00000552783 ADAMTS8Q9UP79 889 aa6.36□□□□□ -1.39
LIMA1-214ENST00000552783 ROCK2O75116 1388 aaKnown RBP6.36□□□□□ -1.39
LIMA1-214ENST00000552783 PLEKHH1Q9ULM0 1364 aa6.36□□□□□ -1.39
LIMA1-214ENST00000552783 E9PCH4 1651 aa6.36□□□□□ -1.39
LIMA1-214ENST00000552783 HNRNPMP52272 730 aaKnown RBP eCLIP6.36□□□□□ -1.39
LIMA1-214ENST00000552783 UHRF1BP1Q6BDS2 1440 aa6.35□□□□□ -1.39
LIMA1-214ENST00000552783 PDE3BQ13370 1112 aa6.35□□□□□ -1.39
LIMA1-214ENST00000552783 ARXQ96QS3 562 aa6.35□□□□□ -1.39
LIMA1-214ENST00000552783 RRAGDQ9NQL2 400 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-214ENST00000552783 USP19O94966 1318 aa6.35□□□□□ -1.39
LIMA1-214ENST00000552783 FAM161AQ3B820 660 aa6.35□□□□□ -1.39
LIMA1-214ENST00000552783 SPINK5Q9NQ38 1064 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-214ENST00000552783 NUP155O75694 1391 aa6.35□□□□□ -1.39
LIMA1-214ENST00000552783 KTN1Q86UP2 1357 aaKnown RBP6.35□□□□□ -1.39
LIMA1-214ENST00000552783 DISP3Q9P2K9 1392 aa6.35□□□□□ -1.39
LIMA1-214ENST00000552783 NUP153P49790 1475 aaKnown RBP6.35□□□□□ -1.39
LIMA1-214ENST00000552783 PANK3Q9H999 370 aa6.35□□□□□ -1.39
LIMA1-214ENST00000552783 ZNF608Q9ULD9 1512 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-214ENST00000552783 CAMSAP2Q08AD1 1489 aa6.34□□□□□ -1.39
LIMA1-214ENST00000552783 DUSP27Q5VZP5 1158 aa6.34□□□□□ -1.39
LIMA1-214ENST00000552783 JPH4Q96JJ6 628 aa6.34□□□□□ -1.39
LIMA1-214ENST00000552783 DNAJC5Q9H3Z4 198 aa6.34□□□□□ -1.39
LIMA1-214ENST00000552783 DAXXQ9UER7 740 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-214ENST00000552783 EIF4G3O43432 1585 aaKnown RBP6.34□□□□□ -1.4
LIMA1-214ENST00000552783 IGHDP01880 384 aa6.33□□□□□ -1.4
LIMA1-214ENST00000552783 BLMP54132 1417 aaPredicted RBP6.33□□□□□ -1.4
LIMA1-214ENST00000552783 SLKQ9H2G2 1235 aaPredicted RBP6.33□□□□□ -1.4
LIMA1-214ENST00000552783 IQGAP2Q13576 1575 aa6.33□□□□□ -1.4
LIMA1-214ENST00000552783 ANKRD50Q9ULJ7 1429 aa6.33□□□□□ -1.4
LIMA1-214ENST00000552783 BCAR3O75815 825 aa6.33□□□□□ -1.4
LIMA1-214ENST00000552783 CENPQQ7L2Z9 268 aaPredicted RBP6.33□□□□□ -1.4
LIMA1-214ENST00000552783 TESK2Q96S53 571 aa6.33□□□□□ -1.4
LIMA1-214ENST00000552783 DMRT2Q9Y5R5 561 aa6.32□□□□□ -1.4
LIMA1-214ENST00000552783 CCDC146Q8IYE0 955 aa6.32□□□□□ -1.4
LIMA1-214ENST00000552783 GPATCH8Q9UKJ3 1502 aaKnown RBP6.32□□□□□ -1.4
LIMA1-214ENST00000552783 FAM43AQ8N2R8 423 aa6.31□□□□□ -1.4
LIMA1-214ENST00000552783 ZMYM4Q5VZL5 1548 aa6.31□□□□□ -1.4
LIMA1-214ENST00000552783 DISP1Q96F81 1524 aa6.3□□□□□ -1.4
LIMA1-214ENST00000552783 CHGAP10645 457 aaKnown RBP6.3□□□□□ -1.4
LIMA1-214ENST00000552783 PANK2Q9BZ23 570 aa6.3□□□□□ -1.4
LIMA1-214ENST00000552783 ZNF521Q96K83 1311 aa6.3□□□□□ -1.4
LIMA1-214ENST00000552783 ANKRD30AQ9BXX3 1397 aa6.3□□□□□ -1.4
LIMA1-214ENST00000552783 SPRYD3Q8NCJ5 442 aa6.3□□□□□ -1.4
LIMA1-214ENST00000552783 PLB1Q6P1J6 1458 aa6.29□□□□□ -1.4
LIMA1-214ENST00000552783 PRAG1Q86YV5 1406 aa6.29□□□□□ -1.4
LIMA1-214ENST00000552783 KDM5DQ9BY66 1539 aa6.29□□□□□ -1.4
LIMA1-214ENST00000552783 RSPH6AQ9H0K4 717 aa6.29□□□□□ -1.4
LIMA1-214ENST00000552783 ADGRL2O95490 1459 aa6.29□□□□□ -1.4
LIMA1-214ENST00000552783 ARHGEF12Q9NZN5 1544 aa6.29□□□□□ -1.4
LIMA1-214ENST00000552783 GZF1Q9H116 711 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-214ENST00000552783 ANTXR1Q9H6X2 564 aa6.29□□□□□ -1.4
LIMA1-214ENST00000552783 TNNQ9UQP3 1299 aa6.29□□□□□ -1.4
LIMA1-214ENST00000552783 CARMIL2Q6F5E8 1435 aa6.28□□□□□ -1.4
LIMA1-214ENST00000552783 MAGI2Q86UL8 1455 aa6.28□□□□□ -1.4
LIMA1-214ENST00000552783 CEP170Q5SW79 1584 aa6.28□□□□□ -1.4
LIMA1-214ENST00000552783 PPP2R1AP30153 589 aa6.28□□□□□ -1.4
LIMA1-214ENST00000552783 SLFN5Q08AF3 891 aa6.28□□□□□ -1.4
LIMA1-214ENST00000552783 ADGBQ8N7X0 1667 aa6.28□□□□□ -1.4
LIMA1-214ENST00000552783 GOLGA2Q08379 1002 aa6.28□□□□□ -1.4
LIMA1-214ENST00000552783 PANK1Q8TE04 598 aa6.28□□□□□ -1.4
LIMA1-214ENST00000552783 NLRP1Q9C000 1473 aa6.28□□□□□ -1.4
LIMA1-214ENST00000552783 COL17A1Q9UMD9 1497 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-214ENST00000552783 TROQ12816 1431 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-214ENST00000552783 TRPM1Q7Z4N2 1603 aa6.28□□□□□ -1.4
LIMA1-214ENST00000552783 APAF1O14727 1248 aa6.27□□□□□ -1.4
LIMA1-214ENST00000552783 XRCC6P12956 609 aaKnown RBP eCLIP6.27□□□□□ -1.4
LIMA1-214ENST00000552783 CROCC2H7BZ55 1655 aa6.27□□□□□ -1.41
LIMA1-214ENST00000552783 PLA2R1Q13018 1463 aa6.27□□□□□ -1.41
LIMA1-214ENST00000552783 RAPGEF6Q8TEU7 1601 aa6.27□□□□□ -1.41
LIMA1-214ENST00000552783 C9orf84Q5VXU9 1444 aa6.27□□□□□ -1.41
LIMA1-214ENST00000552783 COG6Q9Y2V7 657 aa6.27□□□□□ -1.41
LIMA1-214ENST00000552783 PBRM1Q86U86 1689 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms