RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 RRP1P56182 461 aaKnown RBP20.22■□□□□ 0.83
CUX1-211ENST00000546411 DAPK1P53355 1430 aa20.22■□□□□ 0.83
CUX1-211ENST00000546411 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.21■□□□□ 0.838e-6■□□□□ 8.4
CUX1-211ENST00000546411 BECN1Q14457 450 aa20.21■□□□□ 0.83
CUX1-211ENST00000546411 TROQ12816 1431 aaPredicted RBP20.2■□□□□ 0.82
CUX1-211ENST00000546411 DEKP35659 375 aaKnown RBP20.2■□□□□ 0.82
CUX1-211ENST00000546411 PDE3BQ13370 1112 aa20.19■□□□□ 0.82
CUX1-211ENST00000546411 SPRYD3Q8NCJ5 442 aa20.19■□□□□ 0.82
CUX1-211ENST00000546411 CRBNQ96SW2 442 aa20.19■□□□□ 0.82
CUX1-211ENST00000546411 TCERG1O14776 1098 aaKnown RBP20.18■□□□□ 0.82
CUX1-211ENST00000546411 PLB1Q6P1J6 1458 aa20.17■□□□□ 0.82
CUX1-211ENST00000546411 NUTM2FA1L443 756 aa20.17■□□□□ 0.82
CUX1-211ENST00000546411 C9orf84Q5VXU9 1444 aa20.16■□□□□ 0.82
CUX1-211ENST00000546411 MAPKBP1O60336 1514 aa20.15■□□□□ 0.82
CUX1-211ENST00000546411 KIAA1107Q9UPP5 1409 aa20.15■□□□□ 0.82
CUX1-211ENST00000546411 ZNF608Q9ULD9 1512 aaPredicted RBP20.15■□□□□ 0.82
CUX1-211ENST00000546411 IFT140Q96RY7 1462 aa20.15■□□□□ 0.82
CUX1-211ENST00000546411 SUPT6HQ7KZ85 1726 aaKnown RBP20.14■□□□□ 0.82
CUX1-211ENST00000546411 EIF3AQ14152 1382 aaKnown RBP20.14■□□□□ 0.81
CUX1-211ENST00000546411 TMEM132EQ6IEE7 984 aa20.14■□□□□ 0.81
CUX1-211ENST00000546411 MAP3K1Q13233 1512 aa20.14■□□□□ 0.81
CUX1-211ENST00000546411 CFAP70Q5T0N1 1121 aa20.14■□□□□ 0.81
CUX1-211ENST00000546411 LMOD2Q6P5Q4 547 aa20.14■□□□□ 0.81
CUX1-211ENST00000546411 ADAMTS8Q9UP79 889 aa20.14■□□□□ 0.81
CUX1-211ENST00000546411 IPO9Q96P70 1041 aaKnown RBP20.13■□□□□ 0.81
CUX1-211ENST00000546411 AKNAQ7Z591 1439 aa20.13■□□□□ 0.81
CUX1-211ENST00000546411 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.13■□□□□ 0.813e-6■□□□□ 10.3
CUX1-211ENST00000546411 SLC4A3P48751 1232 aa20.13■□□□□ 0.81
CUX1-211ENST00000546411 ANKRD30BQ9BXX2 1392 aa20.12■□□□□ 0.81
CUX1-211ENST00000546411 PNISRQ8TF01 805 aaKnown RBP20.12■□□□□ 0.81
CUX1-211ENST00000546411 ABCC5O15440 1437 aa20.12■□□□□ 0.81
CUX1-211ENST00000546411 CYB5RLQ6IPT4 315 aa20.11■□□□□ 0.81
CUX1-211ENST00000546411 KIAA0586Q9BVV6 1533 aa20.11■□□□□ 0.81
CUX1-211ENST00000546411 HECW1Q76N89 1606 aa20.1■□□□□ 0.81
CUX1-211ENST00000546411 IQGAP2Q13576 1575 aa20.1■□□□□ 0.81
CUX1-211ENST00000546411 HDGFL2Q7Z4V5 671 aaPredicted RBP20.1■□□□□ 0.81
CUX1-211ENST00000546411 PDE4AP27815 886 aa20.1■□□□□ 0.81
CUX1-211ENST00000546411 APBB1O00213 710 aa20.09■□□□□ 0.81
CUX1-211ENST00000546411 CENPJQ9HC77 1338 aaPredicted RBP20.08■□□□□ 0.81
CUX1-211ENST00000546411 ITPRIPQ8IWB1 547 aa20.08■□□□□ 0.81
CUX1-211ENST00000546411 SLKQ9H2G2 1235 aaPredicted RBP20.08■□□□□ 0.81
CUX1-211ENST00000546411 PTPN23Q9H3S7 1636 aa20.08■□□□□ 0.81
CUX1-211ENST00000546411 ARHGAP5Q13017 1502 aa20.08■□□□□ 0.8
CUX1-211ENST00000546411 SYNJ2O15056 1496 aa20.08■□□□□ 0.8
CUX1-211ENST00000546411 MINK1Q8N4C8 1332 aaPredicted RBP20.07■□□□□ 0.8
CUX1-211ENST00000546411 COG6Q9Y2V7 657 aa20.07■□□□□ 0.8
CUX1-211ENST00000546411 LAMC3Q9Y6N6 1575 aa20.07■□□□□ 0.8
CUX1-211ENST00000546411 SMC4Q9NTJ3 1288 aa20.07■□□□□ 0.8
CUX1-211ENST00000546411 ARHGEF11O15085 1522 aa20.06■□□□□ 0.8
CUX1-211ENST00000546411 ELL2O00472 640 aaPredicted RBP20.06■□□□□ 0.8
CUX1-211ENST00000546411 CUL7Q14999 1698 aa20.04■□□□□ 0.8
CUX1-211ENST00000546411 TPRNQ4KMQ1 711 aa20.03■□□□□ 0.8
CUX1-211ENST00000546411 ANP32BQ92688 251 aaKnown RBP20.03■□□□□ 0.8
CUX1-211ENST00000546411 TERF2IPQ9NYB0 399 aa20.01■□□□□ 0.79
CUX1-211ENST00000546411 MS4A1P11836 297 aa20■□□□□ 0.79
CUX1-211ENST00000546411 NCOA1Q15788 1441 aa20■□□□□ 0.79
CUX1-211ENST00000546411 BRD4O60885 1362 aaPredicted RBP20■□□□□ 0.79
CUX1-211ENST00000546411 ROCK1Q13464 1354 aa20■□□□□ 0.79
CUX1-211ENST00000546411 THOC2Q8NI27 1593 aaKnown RBP19.99■□□□□ 0.79
CUX1-211ENST00000546411 VGFO15240 615 aaPredicted RBP19.99■□□□□ 0.79
CUX1-211ENST00000546411 PNNQ9H307 717 aaKnown RBP19.99■□□□□ 0.79
CUX1-211ENST00000546411 FANCIQ9NVI1 1328 aa19.98■□□□□ 0.79
CUX1-211ENST00000546411 OSCARQ8IYS5 282 aa19.98■□□□□ 0.79
CUX1-211ENST00000546411 NCLP19338 710 aaKnown RBP19.98■□□□□ 0.79
CUX1-211ENST00000546411 PPP2R1AP30153 589 aa19.97■□□□□ 0.79
CUX1-211ENST00000546411 CAMSAP2Q08AD1 1489 aa19.97■□□□□ 0.79
CUX1-211ENST00000546411 RWDD1Q9H446 243 aaPredicted RBP19.97■□□□□ 0.79
CUX1-211ENST00000546411 GRIN2AQ12879 1464 aa19.96■□□□□ 0.79
CUX1-211ENST00000546411 E9PSI1 815 aa19.96■□□□□ 0.79
CUX1-211ENST00000546411 SLC12A5Q9H2X9 1139 aa19.96■□□□□ 0.79
CUX1-211ENST00000546411 CABP2Q9NPB3 220 aa19.96■□□□□ 0.79
CUX1-211ENST00000546411 CGNL1Q0VF96 1302 aa19.96■□□□□ 0.79
CUX1-211ENST00000546411 A0A0G2JS52 829 aa19.96■□□□□ 0.79
CUX1-211ENST00000546411 GGNBP2Q9H3C7 697 aa19.96■□□□□ 0.79
CUX1-211ENST00000546411 TRHP20396 242 aaPredicted RBP19.95■□□□□ 0.78
CUX1-211ENST00000546411 SCAPERQ9BY12 1400 aa19.95■□□□□ 0.78
CUX1-211ENST00000546411 MFAP1P55081 439 aaKnown RBP19.94■□□□□ 0.78
CUX1-211ENST00000546411 EVC2Q86UK5 1308 aa19.94■□□□□ 0.78
CUX1-211ENST00000546411 IPO8O15397 1037 aaKnown RBP19.93■□□□□ 0.78
CUX1-211ENST00000546411 PAK3O75914 559 aaPredicted RBP19.93■□□□□ 0.78
CUX1-211ENST00000546411 CENPQQ7L2Z9 268 aaPredicted RBP19.93■□□□□ 0.78
CUX1-211ENST00000546411 PANK1Q8TE04 598 aa19.93■□□□□ 0.78
CUX1-211ENST00000546411 HSP90AB1P08238 724 aaKnown RBP19.92■□□□□ 0.78
CUX1-211ENST00000546411 SKAP1Q86WV1 359 aa19.92■□□□□ 0.78
CUX1-211ENST00000546411 MTHFSP49914 203 aa19.92■□□□□ 0.78
CUX1-211ENST00000546411 MAGI1Q96QZ7 1491 aaPredicted RBP19.92■□□□□ 0.78
CUX1-211ENST00000546411 RPRD2Q5VT52 1461 aaKnown RBP19.91■□□□□ 0.78
CUX1-211ENST00000546411 HDGFP51858 240 aaKnown RBP19.9■□□□□ 0.78
CUX1-211ENST00000546411 GZF1Q9H116 711 aaPredicted RBP19.9■□□□□ 0.78
CUX1-211ENST00000546411 RAPGEF3O95398 923 aa19.89■□□□□ 0.77
CUX1-211ENST00000546411 PMFBP1Q8TBY8 1022 aa19.89■□□□□ 0.77
CUX1-211ENST00000546411 BCAR3O75815 825 aa19.87■□□□□ 0.77
CUX1-211ENST00000546411 RTF1Q92541 710 aaKnown RBP19.87■□□□□ 0.77
CUX1-211ENST00000546411 FAM161AQ3B820 660 aa19.87■□□□□ 0.77
CUX1-211ENST00000546411 HSCBQ8IWL3 235 aa19.86■□□□□ 0.77
CUX1-211ENST00000546411 TCP11L2Q8N4U5 519 aa19.86■□□□□ 0.77
CUX1-211ENST00000546411 LTV1Q96GA3 475 aaPredicted RBP19.85■□□□□ 0.77
CUX1-211ENST00000546411 GOLGA6L22H0YM25 854 aa19.84■□□□□ 0.77
CUX1-211ENST00000546411 GPATCH8Q9UKJ3 1502 aaKnown RBP19.84■□□□□ 0.77
CUX1-211ENST00000546411 HMOX1P09601 288 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms