RNA–Protein interactions for RNA: ENST00000546296.5

LTBR-215, Transcript of lymphotoxin beta receptor, humanhuman

TSL 4

Gene LTBR, Length 783 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-215ENST00000546296 ERBINQ96RT1 1412 aa25.46■■□□□ 1.67
LTBR-215ENST00000546296 CNTLNQ9NXG0 1405 aa25.46■■□□□ 1.67
LTBR-215ENST00000546296 WASHC2CQ9Y4E1 1318 aa25.45■■□□□ 1.66
LTBR-215ENST00000546296 CEBPAP49715 358 aaPredicted RBP25.45■■□□□ 1.66
LTBR-215ENST00000546296 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.43■■□□□ 1.662e-7■□□□□ 9.7
LTBR-215ENST00000546296 ANKRD50Q9ULJ7 1429 aa25.41■■□□□ 1.66
LTBR-215ENST00000546296 EIF2AK4Q9P2K8 1649 aaKnown RBP25.41■■□□□ 1.66
LTBR-215ENST00000546296 ZMYM3Q14202 1370 aa25.4■■□□□ 1.66
LTBR-215ENST00000546296 KANK1Q14678 1352 aa25.35■■□□□ 1.65
LTBR-215ENST00000546296 RNF17Q9BXT8 1623 aaKnown RBP25.35■■□□□ 1.65
LTBR-215ENST00000546296 CLTCQ00610 1675 aaKnown RBP25.35■■□□□ 1.65
LTBR-215ENST00000546296 KDM5DQ9BY66 1539 aa25.33■■□□□ 1.65
LTBR-215ENST00000546296 FAM135AQ9P2D6 1515 aa25.31■■□□□ 1.64
LTBR-215ENST00000546296 MROH2AA6NES4 1674 aa25.29■■□□□ 1.64
LTBR-215ENST00000546296 C3P01024 1663 aa25.29■■□□□ 1.64
LTBR-215ENST00000546296 MROH1Q8NDA8 1641 aa25.28■■□□□ 1.64
LTBR-215ENST00000546296 ABCC3O15438 1527 aa25.27■■□□□ 1.64
LTBR-215ENST00000546296 NAIPQ13075 1403 aa25.26■■□□□ 1.63
LTBR-215ENST00000546296 PRDM15P57071 1507 aaPredicted RBP25.26■■□□□ 1.63
LTBR-215ENST00000546296 DEPDC5O75140 1603 aa25.24■■□□□ 1.63
LTBR-215ENST00000546296 FBXO31Q5XUX0 539 aaPredicted RBP25.24■■□□□ 1.63
LTBR-215ENST00000546296 HFM1A2PYH4 1435 aa25.23■■□□□ 1.63
LTBR-215ENST00000546296 NPATQ14207 1427 aa25.23■■□□□ 1.63
LTBR-215ENST00000546296 ZC3H13Q5T200 1668 aaKnown RBP25.22■■□□□ 1.63
LTBR-215ENST00000546296 PZPP20742 1482 aa25.21■■□□□ 1.63
LTBR-215ENST00000546296 NUP155O75694 1391 aa25.2■■□□□ 1.63
LTBR-215ENST00000546296 CEP152O94986 1710 aa25.18■■□□□ 1.62
LTBR-215ENST00000546296 UHRF1BP1Q6BDS2 1440 aa25.18■■□□□ 1.62
LTBR-215ENST00000546296 TRIM52Q96A61 297 aa25.17■■□□□ 1.62
LTBR-215ENST00000546296 VWDEQ8N2E2 1590 aa25.16■■□□□ 1.62
LTBR-215ENST00000546296 TNRQ92752 1358 aa25.16■■□□□ 1.62
LTBR-215ENST00000546296 UNC13BO14795 1591 aa25.15■■□□□ 1.62
LTBR-215ENST00000546296 GCC2Q8IWJ2 1684 aa25.15■■□□□ 1.62
LTBR-215ENST00000546296 LMTK2Q8IWU2 1503 aa25.15■■□□□ 1.62
LTBR-215ENST00000546296 CAMSAP1Q5T5Y3 1602 aa25.15■■□□□ 1.62
LTBR-215ENST00000546296 ARHGAP31Q2M1Z3 1444 aa25.14■■□□□ 1.62
LTBR-215ENST00000546296 LMTK3Q96Q04 1460 aa25.14■■□□□ 1.61
LTBR-215ENST00000546296 HSPA2P54652 639 aa25.13■■□□□ 1.61
LTBR-215ENST00000546296 SETD1BQ9UPS6 1966 aaKnown RBP25.13■■□□□ 1.61
LTBR-215ENST00000546296 PREX1Q8TCU6 1659 aa25.11■■□□□ 1.61
LTBR-215ENST00000546296 SETD5Q9C0A6 1442 aa25.11■■□□□ 1.61
LTBR-215ENST00000546296 ERVK-7P63135 1459 aa25.09■■□□□ 1.61
LTBR-215ENST00000546296 EFCAB6Q5THR3 1501 aa25.07■■□□□ 1.6
LTBR-215ENST00000546296 IQGAP3Q86VI3 1631 aa25.05■■□□□ 1.6
LTBR-215ENST00000546296 SPATA31D1Q6ZQQ2 1576 aa25.05■■□□□ 1.6
LTBR-215ENST00000546296 TET3O43151 1660 aa25.04■■□□□ 1.6
LTBR-215ENST00000546296 ACIN1Q9UKV3 1341 aaKnown RBP25.04■■□□□ 1.6
LTBR-215ENST00000546296 RPRD2Q5VT52 1461 aaKnown RBP25.02■■□□□ 1.6
LTBR-215ENST00000546296 MYO3AQ8NEV4 1616 aa25.02■■□□□ 1.6
LTBR-215ENST00000546296 SLC4A1APQ9BWU0 796 aaKnown RBP25.02■■□□□ 1.6
LTBR-215ENST00000546296 CFAP65Q6ZU64 1925 aaKnown RBP25.02■■□□□ 1.6
LTBR-215ENST00000546296 A2ML1A8K2U0 1454 aa25.02■■□□□ 1.6
LTBR-215ENST00000546296 NLRP1Q9C000 1473 aa25.02■■□□□ 1.6
LTBR-215ENST00000546296 RAB3GAP2Q9H2M9 1393 aa25.01■■□□□ 1.59
LTBR-215ENST00000546296 CEP170BQ9Y4F5 1589 aaPredicted RBP24.99■■□□□ 1.59
LTBR-215ENST00000546296 TRIM26Q12899 539 aaPredicted RBP24.98■■□□□ 1.59
LTBR-215ENST00000546296 PKD2Q13563 968 aa24.98■■□□□ 1.59
LTBR-215ENST00000546296 THEMISQ8N1K5 641 aaPredicted RBP24.98■■□□□ 1.59
LTBR-215ENST00000546296 STAG3Q9UJ98 1225 aa24.98■■□□□ 1.59
LTBR-215ENST00000546296 NOS1P29475 1434 aa24.97■■□□□ 1.59
LTBR-215ENST00000546296 SLC52A1Q9NWF4 448 aa24.97■■□□□ 1.59
LTBR-215ENST00000546296 IDI1Q13907 227 aa24.96■■□□□ 1.59
LTBR-215ENST00000546296 MPHOSPH9Q99550 1183 aa24.94■■□□□ 1.58
LTBR-215ENST00000546296 E9PCH4 1651 aa24.94■■□□□ 1.58
LTBR-215ENST00000546296 ZNF142P52746 1687 aaPredicted RBP24.93■■□□□ 1.58
LTBR-215ENST00000546296 UGGT1Q9NYU2 1555 aa24.93■■□□□ 1.58
LTBR-215ENST00000546296 HRCP23327 699 aa24.92■■□□□ 1.58
LTBR-215ENST00000546296 SYNMO15061 1565 aa24.91■■□□□ 1.58
LTBR-215ENST00000546296 NCKAP5LQ9HCH0 1330 aa24.89■■□□□ 1.58
LTBR-215ENST00000546296 CHGAP10645 457 aaKnown RBP24.89■■□□□ 1.58
LTBR-215ENST00000546296 DMRT2Q9Y5R5 561 aa24.89■■□□□ 1.58
LTBR-215ENST00000546296 FOXD1Q16676 465 aa24.88■■□□□ 1.57
LTBR-215ENST00000546296 ANKLE2Q86XL3 938 aa24.87■■□□□ 1.57
LTBR-215ENST00000546296 PLA2R1Q13018 1463 aa24.85■■□□□ 1.57
LTBR-215ENST00000546296 PTPRTO14522 1441 aa24.85■■□□□ 1.57
LTBR-215ENST00000546296 PIK3C2BO00750 1634 aa24.83■■□□□ 1.57
LTBR-215ENST00000546296 EID1Q9Y6B2 187 aa24.81■■□□□ 1.56
LTBR-215ENST00000546296 TXNDC2Q86VQ3 553 aa24.8■■□□□ 1.56
LTBR-215ENST00000546296 UBR1Q8IWV7 1749 aa24.8■■□□□ 1.56
LTBR-215ENST00000546296 STRCQ7RTU9 1775 aa24.79■■□□□ 1.56
LTBR-215ENST00000546296 SPHKAPQ2M3C7 1700 aa24.78■■□□□ 1.56
LTBR-215ENST00000546296 TMEM2Q9UHN6 1383 aa24.78■■□□□ 1.56
LTBR-215ENST00000546296 ADGRB3O60242 1522 aa24.77■■□□□ 1.56
LTBR-215ENST00000546296 TRPM2O94759 1503 aa24.76■■□□□ 1.55
LTBR-215ENST00000546296 HDGFP51858 240 aaKnown RBP24.75■■□□□ 1.55
LTBR-215ENST00000546296 LTKP29376 864 aa24.74■■□□□ 1.55
LTBR-215ENST00000546296 ZNF326Q5BKZ1 582 aaKnown RBP24.74■■□□□ 1.55
LTBR-215ENST00000546296 KDM5AP29375 1690 aaKnown RBP24.73■■□□□ 1.55
LTBR-215ENST00000546296 SLIT1O75093 1534 aa24.72■■□□□ 1.55
LTBR-215ENST00000546296 ARHGAP23Q9P227 1491 aa24.72■■□□□ 1.55
LTBR-215ENST00000546296 PPP1R15AO75807 674 aaPredicted RBP24.71■■□□□ 1.55
LTBR-215ENST00000546296 TMEM131LA2VDJ0 1609 aa24.71■■□□□ 1.55
LTBR-215ENST00000546296 SCAF11Q99590 1463 aaKnown RBP24.7■■□□□ 1.55
LTBR-215ENST00000546296 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.7■■□□□ 1.54
LTBR-215ENST00000546296 BCANQ96GW7 911 aa24.7■■□□□ 1.54
LTBR-215ENST00000546296 CCDC144AA2RUR9 1427 aa24.69■■□□□ 1.54
LTBR-215ENST00000546296 NPHP4O75161 1426 aaPredicted RBP24.69■■□□□ 1.54
LTBR-215ENST00000546296 CLTCL1P53675 1640 aa24.69■■□□□ 1.54
LTBR-215ENST00000546296 RIMS2Q9UQ26 1411 aa24.69■■□□□ 1.54
LTBR-215ENST00000546296 NUTM2DQ5VT03 806 aaPredicted RBP24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms