RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 USP35Q9P2H5 1018 aa15.72■□□□□ 0.11
COL4A6-209ENST00000545689 E9PSI1 815 aa15.71■□□□□ 0.11
COL4A6-209ENST00000545689 PANK3Q9H999 370 aa15.71■□□□□ 0.11
COL4A6-209ENST00000545689 MIA2Q96PC5 1412 aa15.7■□□□□ 0.1
COL4A6-209ENST00000545689 NAP1L2Q9ULW6 460 aaPredicted RBP15.7■□□□□ 0.1
COL4A6-209ENST00000545689 GPATCH3Q96I76 525 aa15.7■□□□□ 0.1
COL4A6-209ENST00000545689 RTN4Q9NQC3 1192 aaKnown RBP15.69■□□□□ 0.1
COL4A6-209ENST00000545689 RRP1P56182 461 aaKnown RBP15.69■□□□□ 0.1
COL4A6-209ENST00000545689 SOX12O15370 315 aa15.69■□□□□ 0.1
COL4A6-209ENST00000545689 SPRYD3Q8NCJ5 442 aa15.69■□□□□ 0.1
COL4A6-209ENST00000545689 CGNL1Q0VF96 1302 aa15.68■□□□□ 0.1
COL4A6-209ENST00000545689 RRBP1Q9P2E9 1410 aaKnown RBP15.68■□□□□ 0.1
COL4A6-209ENST00000545689 CCDC146Q8IYE0 955 aa15.68■□□□□ 0.1
COL4A6-209ENST00000545689 EFCAB5A4FU69 1503 aa15.68■□□□□ 0.1
COL4A6-209ENST00000545689 CNTLNQ9NXG0 1405 aa15.67■□□□□ 0.1
COL4A6-209ENST00000545689 EVC2Q86UK5 1308 aa15.67■□□□□ 0.1
COL4A6-209ENST00000545689 CSPP1Q1MSJ5 1256 aa15.67■□□□□ 0.1
COL4A6-209ENST00000545689 MFAP1P55081 439 aaKnown RBP15.66■□□□□ 0.1
COL4A6-209ENST00000545689 VGFO15240 615 aaPredicted RBP15.66■□□□□ 0.1
COL4A6-209ENST00000545689 EID1Q9Y6B2 187 aa15.66■□□□□ 0.1
COL4A6-209ENST00000545689 GOLGA6L3A6NEY3 463 aa15.66■□□□□ 0.1
COL4A6-209ENST00000545689 NPHP1O15259 732 aa15.66■□□□□ 0.1
COL4A6-209ENST00000545689 FAM161AQ3B820 660 aa15.66■□□□□ 0.1
COL4A6-209ENST00000545689 CCDC7Q96M83 1385 aa15.65■□□□□ 0.1
COL4A6-209ENST00000545689 SLKQ9H2G2 1235 aaPredicted RBP15.64■□□□□ 0.09
COL4A6-209ENST00000545689 NCOA2Q15596 1464 aa15.64■□□□□ 0.09
COL4A6-209ENST00000545689 FANCIQ9NVI1 1328 aa15.64■□□□□ 0.09
COL4A6-209ENST00000545689 KIAA2012Q0VF49 1180 aa15.63■□□□□ 0.09
COL4A6-209ENST00000545689 DRC7Q8IY82 874 aa15.63■□□□□ 0.09
COL4A6-209ENST00000545689 RAD54L2Q9Y4B4 1467 aa15.63■□□□□ 0.09
COL4A6-209ENST00000545689 APBB1O00213 710 aa15.63■□□□□ 0.09
COL4A6-209ENST00000545689 DDX11L8A8MPP1 907 aa15.62■□□□□ 0.09
COL4A6-209ENST00000545689 ZKSCAN2Q63HK3 967 aa15.62■□□□□ 0.09
COL4A6-209ENST00000545689 PAK3O75914 559 aaPredicted RBP15.61■□□□□ 0.09
COL4A6-209ENST00000545689 AAMPQ13685 434 aa15.61■□□□□ 0.09
COL4A6-209ENST00000545689 TRAK1Q9UPV9 953 aa15.61■□□□□ 0.09
COL4A6-209ENST00000545689 ST18O60284 1047 aa15.61■□□□□ 0.09
COL4A6-209ENST00000545689 PDE4AP27815 886 aa15.61■□□□□ 0.09
COL4A6-209ENST00000545689 GNL2Q13823 731 aaKnown RBP15.61■□□□□ 0.09
COL4A6-209ENST00000545689 EHBP1L1Q8N3D4 1523 aa15.6■□□□□ 0.09
COL4A6-209ENST00000545689 SYNJ1O43426 1573 aa15.59■□□□□ 0.09
COL4A6-209ENST00000545689 TOP2BQ02880 1626 aa15.59■□□□□ 0.09
COL4A6-209ENST00000545689 CLUAP1Q96AJ1 413 aa15.59■□□□□ 0.09
COL4A6-209ENST00000545689 PHF14O94880 888 aa15.58■□□□□ 0.09
COL4A6-209ENST00000545689 CFTRP13569 1480 aa15.58■□□□□ 0.09
COL4A6-209ENST00000545689 TPM4P67936 248 aa15.57■□□□□ 0.08
COL4A6-209ENST00000545689 ANKRD50Q9ULJ7 1429 aa15.57■□□□□ 0.08
COL4A6-209ENST00000545689 BRD4O60885 1362 aaPredicted RBP15.57■□□□□ 0.08
COL4A6-209ENST00000545689 KIF7Q2M1P5 1343 aa15.57■□□□□ 0.08
COL4A6-209ENST00000545689 CSB-PGBD3P0DP91 1061 aa15.57■□□□□ 0.08
COL4A6-209ENST00000545689 NGDNQ8NEJ9 315 aaKnown RBP15.57■□□□□ 0.08
COL4A6-209ENST00000545689 AMPHP49418 695 aa15.57■□□□□ 0.08
COL4A6-209ENST00000545689 EXOC6Q8TAG9 804 aa15.57■□□□□ 0.08
COL4A6-209ENST00000545689 TRIM6-TRIM34B2RNG4 842 aa15.56■□□□□ 0.08
COL4A6-209ENST00000545689 CRBNQ96SW2 442 aa15.56■□□□□ 0.08
COL4A6-209ENST00000545689 GRIN2BQ13224 1484 aa15.56■□□□□ 0.08
COL4A6-209ENST00000545689 SKOR2Q2VWA4 1001 aaPredicted RBP15.56■□□□□ 0.08
COL4A6-209ENST00000545689 ARAP1Q96P48 1450 aa15.56■□□□□ 0.08
COL4A6-209ENST00000545689 PRDM2Q13029 1718 aa15.55■□□□□ 0.08
COL4A6-209ENST00000545689 COG3Q96JB2 828 aa15.55■□□□□ 0.08
COL4A6-209ENST00000545689 CHMP4CQ96CF2 233 aa15.55■□□□□ 0.08
COL4A6-209ENST00000545689 CCDC34Q96HJ3 373 aa15.55■□□□□ 0.08
COL4A6-209ENST00000545689 DDX19BQ9UMR2 479 aa15.55■□□□□ 0.08
COL4A6-209ENST00000545689 HMGXB3Q12766 1538 aa15.54■□□□□ 0.08
COL4A6-209ENST00000545689 TRHP20396 242 aaPredicted RBP15.54■□□□□ 0.08
COL4A6-209ENST00000545689 PRXQ9BXM0 1461 aa15.54■□□□□ 0.08
COL4A6-209ENST00000545689 ROCK1Q13464 1354 aa15.54■□□□□ 0.08
COL4A6-209ENST00000545689 GZF1Q9H116 711 aaPredicted RBP15.54■□□□□ 0.08
COL4A6-209ENST00000545689 KIF3AQ9Y496 699 aa15.54■□□□□ 0.08
COL4A6-209ENST00000545689 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.53■□□□□ 0.08
COL4A6-209ENST00000545689 TAOK2Q9UL54 1235 aa15.53■□□□□ 0.08
COL4A6-209ENST00000545689 SLC4A10Q6U841 1118 aa15.53■□□□□ 0.08
COL4A6-209ENST00000545689 RUNDC1Q96C34 613 aa15.51■□□□□ 0.07
COL4A6-209ENST00000545689 RRP7AQ9Y3A4 280 aaKnown RBP15.51■□□□□ 0.07
COL4A6-209ENST00000545689 GORABQ5T7V8 394 aa15.51■□□□□ 0.07
COL4A6-209ENST00000545689 HECW1Q76N89 1606 aa15.5■□□□□ 0.07
COL4A6-209ENST00000545689 KIF16BQ96L93 1317 aa15.5■□□□□ 0.07
COL4A6-209ENST00000545689 NUTM2DQ5VT03 806 aaPredicted RBP15.5■□□□□ 0.07
COL4A6-209ENST00000545689 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.5■□□□□ 0.07
COL4A6-209ENST00000545689 API5Q9BZZ5 524 aaKnown RBP15.5■□□□□ 0.07
COL4A6-209ENST00000545689 WASHC2AQ641Q2 1341 aa15.5■□□□□ 0.07
COL4A6-209ENST00000545689 TIAM1Q13009 1591 aa15.5■□□□□ 0.07
COL4A6-209ENST00000545689 HFM1A2PYH4 1435 aa15.5■□□□□ 0.07
COL4A6-209ENST00000545689 APAF1O14727 1248 aa15.5■□□□□ 0.07
COL4A6-209ENST00000545689 DIAPH1O60610 1272 aaKnown RBP15.5■□□□□ 0.07
COL4A6-209ENST00000545689 HSP90B1P14625 803 aaKnown RBP15.49■□□□□ 0.07
COL4A6-209ENST00000545689 ATP6V1DQ9Y5K8 247 aa15.48■□□□□ 0.07
COL4A6-209ENST00000545689 SCAPERQ9BY12 1400 aa15.48■□□□□ 0.07
COL4A6-209ENST00000545689 PLIN1O60240 522 aa15.48■□□□□ 0.07
COL4A6-209ENST00000545689 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.48■□□□□ 0.07
COL4A6-209ENST00000545689 PLEKHH2Q8IVE3 1493 aa15.48■□□□□ 0.07
COL4A6-209ENST00000545689 SYNJ2O15056 1496 aa15.48■□□□□ 0.07
COL4A6-209ENST00000545689 DZIP1LQ8IYY4 767 aaKnown RBP15.47■□□□□ 0.07
COL4A6-209ENST00000545689 TAF7LQ5H9L4 462 aa15.47■□□□□ 0.07
COL4A6-209ENST00000545689 ANKRD45Q5TZF3 282 aa15.47■□□□□ 0.07
COL4A6-209ENST00000545689 COG6Q9Y2V7 657 aa15.46■□□□□ 0.07
COL4A6-209ENST00000545689 GSE1Q14687 1217 aa15.46■□□□□ 0.07
COL4A6-209ENST00000545689 REC8O95072 547 aa15.46■□□□□ 0.06
COL4A6-209ENST00000545689 ARHGAP5Q13017 1502 aa15.45■□□□□ 0.06
COL4A6-209ENST00000545689 AQRO60306 1485 aaKnown RBP eCLIP15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms