RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 MYT1LQ9UL68 1186 aa7.62□□□□□ -1.19
USP28-213ENST00000544967 KDM5AP29375 1690 aaKnown RBP7.62□□□□□ -1.19
USP28-213ENST00000544967 LMTK2Q8IWU2 1503 aa7.61□□□□□ -1.19
USP28-213ENST00000544967 PLCB2Q00722 1185 aa7.61□□□□□ -1.19
USP28-213ENST00000544967 C9orf84Q5VXU9 1444 aa7.61□□□□□ -1.19
USP28-213ENST00000544967 CCNB3Q8WWL7 1395 aa7.61□□□□□ -1.19
USP28-213ENST00000544967 TRAPPC8Q9Y2L5 1435 aa7.61□□□□□ -1.19
USP28-213ENST00000544967 FER1L4A9Z1Z3 1794 aa7.61□□□□□ -1.19
USP28-213ENST00000544967 ZNF142P52746 1687 aaPredicted RBP7.6□□□□□ -1.19
USP28-213ENST00000544967 DUOX2Q9NRD8 1548 aa7.6□□□□□ -1.19
USP28-213ENST00000544967 ROCK1Q13464 1354 aa7.6□□□□□ -1.19
USP28-213ENST00000544967 DAPK1P53355 1430 aa7.6□□□□□ -1.19
USP28-213ENST00000544967 ATP10AO60312 1499 aa7.6□□□□□ -1.19
USP28-213ENST00000544967 IQGAP3Q86VI3 1631 aa7.59□□□□□ -1.19
USP28-213ENST00000544967 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.59□□□□□ -1.19
USP28-213ENST00000544967 SLC4A1APQ9BWU0 796 aaKnown RBP7.59□□□□□ -1.19
USP28-213ENST00000544967 ABCC5O15440 1437 aa7.59□□□□□ -1.19
USP28-213ENST00000544967 ERBINQ96RT1 1412 aa7.59□□□□□ -1.19
USP28-213ENST00000544967 SCAPERQ9BY12 1400 aa7.59□□□□□ -1.19
USP28-213ENST00000544967 KANK4Q5T7N3 995 aaPredicted RBP7.59□□□□□ -1.19
USP28-213ENST00000544967 TSHZ2Q9NRE2 1034 aa7.58□□□□□ -1.2
USP28-213ENST00000544967 SUPT16HQ9Y5B9 1047 aaKnown RBP7.58□□□□□ -1.2
USP28-213ENST00000544967 C14orf37Q86TY3 774 aa7.58□□□□□ -1.2
USP28-213ENST00000544967 RSPH4AQ5TD94 716 aa7.58□□□□□ -1.2
USP28-213ENST00000544967 EFCAB2Q5VUJ9 269 aa7.57□□□□□ -1.2
USP28-213ENST00000544967 C3P01024 1663 aa7.56□□□□□ -1.2
USP28-213ENST00000544967 CAMSAP1Q5T5Y3 1602 aa7.56□□□□□ -1.2
USP28-213ENST00000544967 TET3O43151 1660 aa7.55□□□□□ -1.2
USP28-213ENST00000544967 YEATS2Q9ULM3 1422 aa7.55□□□□□ -1.2
USP28-213ENST00000544967 NEURL4Q96JN8 1562 aa7.55□□□□□ -1.2
USP28-213ENST00000544967 MADDQ8WXG6 1647 aa7.55□□□□□ -1.2
USP28-213ENST00000544967 PIK3C2BO00750 1634 aa7.55□□□□□ -1.2
USP28-213ENST00000544967 A2MP01023 1474 aa7.54□□□□□ -1.2
USP28-213ENST00000544967 MIER1Q8N108 512 aa7.54□□□□□ -1.2
USP28-213ENST00000544967 PTPRKQ15262 1439 aa7.53□□□□□ -1.2
USP28-213ENST00000544967 PREX1Q8TCU6 1659 aa7.53□□□□□ -1.2
USP28-213ENST00000544967 NCOA1Q15788 1441 aa7.53□□□□□ -1.2
USP28-213ENST00000544967 HAP1P54257 671 aaPredicted RBP7.53□□□□□ -1.2
USP28-213ENST00000544967 CEP152O94986 1710 aa7.53□□□□□ -1.2
USP28-213ENST00000544967 CLTCQ00610 1675 aaKnown RBP7.53□□□□□ -1.2
USP28-213ENST00000544967 SPATA31D1Q6ZQQ2 1576 aa7.53□□□□□ -1.2
USP28-213ENST00000544967 TMEM132AQ24JP5 1023 aa7.52□□□□□ -1.21
USP28-213ENST00000544967 ABCC3O15438 1527 aa7.52□□□□□ -1.21
USP28-213ENST00000544967 EFCAB6Q5THR3 1501 aa7.52□□□□□ -1.21
USP28-213ENST00000544967 ARHGAP31Q2M1Z3 1444 aa7.52□□□□□ -1.21
USP28-213ENST00000544967 RIMS1Q86UR5 1692 aaKnown RBP7.52□□□□□ -1.21
USP28-213ENST00000544967 HFM1A2PYH4 1435 aa7.51□□□□□ -1.21
USP28-213ENST00000544967 DHX29Q7Z478 1369 aaKnown RBP7.51□□□□□ -1.21
USP28-213ENST00000544967 CNTLNQ9NXG0 1405 aa7.5□□□□□ -1.21
USP28-213ENST00000544967 MYO3AQ8NEV4 1616 aa7.5□□□□□ -1.21
USP28-213ENST00000544967 RPRD2Q5VT52 1461 aaKnown RBP7.5□□□□□ -1.21
USP28-213ENST00000544967 E9PCH4 1651 aa7.5□□□□□ -1.21
USP28-213ENST00000544967 KCNH8Q96L42 1107 aa7.5□□□□□ -1.21
USP28-213ENST00000544967 NPATQ14207 1427 aa7.49□□□□□ -1.21
USP28-213ENST00000544967 CFDP1Q9UEE9 299 aaPredicted RBP7.49□□□□□ -1.21
USP28-213ENST00000544967 PPP6R1Q9UPN7 881 aa7.49□□□□□ -1.21
USP28-213ENST00000544967 SPHKAPQ2M3C7 1700 aa7.48□□□□□ -1.21
USP28-213ENST00000544967 TRHP20396 242 aaPredicted RBP7.48□□□□□ -1.21
USP28-213ENST00000544967 PZPP20742 1482 aa7.48□□□□□ -1.21
USP28-213ENST00000544967 NAIPQ13075 1403 aa7.47□□□□□ -1.21
USP28-213ENST00000544967 IFT172Q9UG01 1749 aa7.47□□□□□ -1.21
USP28-213ENST00000544967 ZNF644Q9H582 1327 aaPredicted RBP7.47□□□□□ -1.21
USP28-213ENST00000544967 FANCIQ9NVI1 1328 aa7.46□□□□□ -1.21
USP28-213ENST00000544967 ARID3CA6NKF2 412 aa7.46□□□□□ -1.22
USP28-213ENST00000544967 SYNMO15061 1565 aa7.46□□□□□ -1.22
USP28-213ENST00000544967 UBR1Q8IWV7 1749 aa7.46□□□□□ -1.22
USP28-213ENST00000544967 ANKRD30AQ9BXX3 1397 aa7.45□□□□□ -1.22
USP28-213ENST00000544967 PTPRMP28827 1452 aa7.45□□□□□ -1.22
USP28-213ENST00000544967 POLR1AO95602 1720 aaPredicted RBP7.45□□□□□ -1.22
USP28-213ENST00000544967 HNRNPUL2Q1KMD3 747 aaKnown RBP7.45□□□□□ -1.22
USP28-213ENST00000544967 YTHDC1Q96MU7 727 aaKnown RBP7.44□□□□□ -1.22
USP28-213ENST00000544967 SPAG9O60271 1321 aaKnown RBP7.44□□□□□ -1.22
USP28-213ENST00000544967 RAPGEF3O95398 923 aa7.44□□□□□ -1.22
USP28-213ENST00000544967 PDIA4P13667 645 aaKnown RBP7.44□□□□□ -1.22
USP28-213ENST00000544967 ERICH6BQ5W0A0 696 aa7.44□□□□□ -1.22
USP28-213ENST00000544967 FBXO3Q9UK99 471 aa7.44□□□□□ -1.22
USP28-213ENST00000544967 KIF15Q9NS87 1388 aa7.44□□□□□ -1.22
USP28-213ENST00000544967 TRPM2O94759 1503 aa7.44□□□□□ -1.22
USP28-213ENST00000544967 NOS1P29475 1434 aa7.43□□□□□ -1.22
USP28-213ENST00000544967 UGGT1Q9NYU2 1555 aa7.43□□□□□ -1.22
USP28-213ENST00000544967 PTPRTO14522 1441 aa7.43□□□□□ -1.22
USP28-213ENST00000544967 AFAP1Q8N556 730 aa7.43□□□□□ -1.22
USP28-213ENST00000544967 ANKRD50Q9ULJ7 1429 aa7.42□□□□□ -1.22
USP28-213ENST00000544967 SETD1BQ9UPS6 1966 aaKnown RBP7.42□□□□□ -1.22
USP28-213ENST00000544967 TMEM131LA2VDJ0 1609 aa7.42□□□□□ -1.22
USP28-213ENST00000544967 HNRNPMP52272 730 aaKnown RBP eCLIP7.42□□□□□ -1.22
USP28-213ENST00000544967 ERVK-7P63135 1459 aa7.42□□□□□ -1.22
USP28-213ENST00000544967 STRCQ7RTU9 1775 aa7.41□□□□□ -1.22
USP28-213ENST00000544967 CEP170BQ9Y4F5 1589 aaPredicted RBP7.41□□□□□ -1.22
USP28-213ENST00000544967 SLIT1O75093 1534 aa7.41□□□□□ -1.22
USP28-213ENST00000544967 SETD1AO15047 1707 aaKnown RBP7.41□□□□□ -1.22
USP28-213ENST00000544967 NLRP1Q9C000 1473 aa7.41□□□□□ -1.22
USP28-213ENST00000544967 PLA2R1Q13018 1463 aa7.4□□□□□ -1.22
USP28-213ENST00000544967 LMTK3Q96Q04 1460 aa7.4□□□□□ -1.22
USP28-213ENST00000544967 ADGRB3O60242 1522 aa7.4□□□□□ -1.22
USP28-213ENST00000544967 ATP1B4Q9UN42 357 aaPredicted RBP7.4□□□□□ -1.23
USP28-213ENST00000544967 ARHGAP23Q9P227 1491 aa7.39□□□□□ -1.23
USP28-213ENST00000544967 KDM4FA0A1W2PPD8 638 aa7.39□□□□□ -1.23
USP28-213ENST00000544967 MYO5BQ9ULV0 1848 aa7.39□□□□□ -1.23
USP28-213ENST00000544967 PPLO60437 1756 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms