RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 MROH1Q8NDA8 1641 aa18.47■□□□□ 0.55
SMAD3-204ENST00000540846 ATP10AO60312 1499 aa18.46■□□□□ 0.55
SMAD3-204ENST00000540846 RNF17Q9BXT8 1623 aaKnown RBP18.46■□□□□ 0.55
SMAD3-204ENST00000540846 KDM5DQ9BY66 1539 aa18.44■□□□□ 0.54
SMAD3-204ENST00000540846 AGLP35573 1532 aa18.43■□□□□ 0.54
SMAD3-204ENST00000540846 PRDM15P57071 1507 aaPredicted RBP18.42■□□□□ 0.54
SMAD3-204ENST00000540846 MYT1LQ9UL68 1186 aa18.42■□□□□ 0.54
SMAD3-204ENST00000540846 VWDEQ8N2E2 1590 aa18.41■□□□□ 0.54
SMAD3-204ENST00000540846 IQGAP3Q86VI3 1631 aa18.4■□□□□ 0.54
SMAD3-204ENST00000540846 PZPP20742 1482 aa18.39■□□□□ 0.53
SMAD3-204ENST00000540846 FAM135AQ9P2D6 1515 aa18.35■□□□□ 0.53
SMAD3-204ENST00000540846 KIF3BO15066 747 aa18.34■□□□□ 0.53
SMAD3-204ENST00000540846 CEP152O94986 1710 aa18.33■□□□□ 0.53
SMAD3-204ENST00000540846 ACIN1Q9UKV3 1341 aaKnown RBP18.33■□□□□ 0.52
SMAD3-204ENST00000540846 NUP155O75694 1391 aa18.31■□□□□ 0.52
SMAD3-204ENST00000540846 LMTK2Q8IWU2 1503 aa18.31■□□□□ 0.52
SMAD3-204ENST00000540846 TET3O43151 1660 aa18.31■□□□□ 0.52
SMAD3-204ENST00000540846 ZC3H13Q5T200 1668 aaKnown RBP18.31■□□□□ 0.52
SMAD3-204ENST00000540846 ABCC3O15438 1527 aa18.29■□□□□ 0.52
SMAD3-204ENST00000540846 TRIM52Q96A61 297 aa18.28■□□□□ 0.52
SMAD3-204ENST00000540846 E9PCH4 1651 aa18.28■□□□□ 0.52
SMAD3-204ENST00000540846 CAMSAP1Q5T5Y3 1602 aa18.27■□□□□ 0.51
SMAD3-204ENST00000540846 EFCAB6Q5THR3 1501 aa18.27■□□□□ 0.51
SMAD3-204ENST00000540846 MPHOSPH9Q99550 1183 aa18.25■□□□□ 0.51
SMAD3-204ENST00000540846 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.25■□□□□ 0.512e-7■■□□□ 12.5
SMAD3-204ENST00000540846 CLTCQ00610 1675 aaKnown RBP18.23■□□□□ 0.51
SMAD3-204ENST00000540846 GGT6Q6P531 493 aa18.23■□□□□ 0.51
SMAD3-204ENST00000540846 KANK1Q14678 1352 aa18.23■□□□□ 0.51
SMAD3-204ENST00000540846 SLC4A1APQ9BWU0 796 aaKnown RBP18.22■□□□□ 0.51
SMAD3-204ENST00000540846 FER1L4A9Z1Z3 1794 aa18.2■□□□□ 0.5
SMAD3-204ENST00000540846 MROH2AA6NES4 1674 aa18.2■□□□□ 0.5
SMAD3-204ENST00000540846 ADAMTSL3P82987 1691 aa18.2■□□□□ 0.5
SMAD3-204ENST00000540846 SPHKAPQ2M3C7 1700 aa18.19■□□□□ 0.5
SMAD3-204ENST00000540846 PKD2Q13563 968 aa18.18■□□□□ 0.5
SMAD3-204ENST00000540846 PPP6R1Q9UPN7 881 aa18.18■□□□□ 0.5
SMAD3-204ENST00000540846 NPATQ14207 1427 aa18.18■□□□□ 0.5
SMAD3-204ENST00000540846 ANKRD30BQ9BXX2 1392 aa18.17■□□□□ 0.5
SMAD3-204ENST00000540846 ARHGAP31Q2M1Z3 1444 aa18.17■□□□□ 0.5
SMAD3-204ENST00000540846 PLA2R1Q13018 1463 aa18.17■□□□□ 0.5
SMAD3-204ENST00000540846 RPRD2Q5VT52 1461 aaKnown RBP18.17■□□□□ 0.5
SMAD3-204ENST00000540846 FOXD1Q16676 465 aa18.17■□□□□ 0.5
SMAD3-204ENST00000540846 MADDQ8WXG6 1647 aa18.16■□□□□ 0.5
SMAD3-204ENST00000540846 ARID4BQ4LE39 1312 aaPredicted RBP18.16■□□□□ 0.5
SMAD3-204ENST00000540846 WASHC2CQ9Y4E1 1318 aa18.16■□□□□ 0.5
SMAD3-204ENST00000540846 MLECQ14165 292 aa18.15■□□□□ 0.5
SMAD3-204ENST00000540846 PREX1Q8TCU6 1659 aa18.15■□□□□ 0.5
SMAD3-204ENST00000540846 PTPRTO14522 1441 aa18.14■□□□□ 0.5
SMAD3-204ENST00000540846 TRPM2O94759 1503 aa18.14■□□□□ 0.49
SMAD3-204ENST00000540846 CFAP65Q6ZU64 1925 aaKnown RBP18.13■□□□□ 0.49
SMAD3-204ENST00000540846 C3P01024 1663 aa18.12■□□□□ 0.49
SMAD3-204ENST00000540846 CNTLNQ9NXG0 1405 aa18.12■□□□□ 0.49
SMAD3-204ENST00000540846 SYNMO15061 1565 aa18.11■□□□□ 0.49
SMAD3-204ENST00000540846 NOS1P29475 1434 aa18.11■□□□□ 0.49
SMAD3-204ENST00000540846 RIMS1Q86UR5 1692 aaKnown RBP18.1■□□□□ 0.49
SMAD3-204ENST00000540846 PIK3C2BO00750 1634 aa18.1■□□□□ 0.49
SMAD3-204ENST00000540846 CLTCL1P53675 1640 aa18.1■□□□□ 0.49
SMAD3-204ENST00000540846 SPATA31D1Q6ZQQ2 1576 aa18.09■□□□□ 0.49
SMAD3-204ENST00000540846 ERVK-7P63135 1459 aa18.08■□□□□ 0.49
SMAD3-204ENST00000540846 UGGT1Q9NYU2 1555 aa18.07■□□□□ 0.48
SMAD3-204ENST00000540846 ZMYM3Q14202 1370 aa18.07■□□□□ 0.48
SMAD3-204ENST00000540846 TIMELESSQ9UNS1 1208 aa18.06■□□□□ 0.48
SMAD3-204ENST00000540846 SIN3AQ96ST3 1273 aa18.05■□□□□ 0.48
SMAD3-204ENST00000540846 ZNF316A6NFI3 1004 aaPredicted RBP18.04■□□□□ 0.48
SMAD3-204ENST00000540846 CCDC144AA2RUR9 1427 aa18.02■□□□□ 0.48
SMAD3-204ENST00000540846 FBXO31Q5XUX0 539 aaPredicted RBP18.01■□□□□ 0.47
SMAD3-204ENST00000540846 NEURL4Q96JN8 1562 aa18.01■□□□□ 0.47
SMAD3-204ENST00000540846 KIF1BO60333 1816 aa18■□□□□ 0.47
SMAD3-204ENST00000540846 ESF1Q9H501 851 aaKnown RBP18■□□□□ 0.47
SMAD3-204ENST00000540846 SPATA31E1Q6ZUB1 1445 aa17.98■□□□□ 0.47
SMAD3-204ENST00000540846 ADGRB3O60242 1522 aa17.98■□□□□ 0.47
SMAD3-204ENST00000540846 MYO5BQ9ULV0 1848 aa17.97■□□□□ 0.47
SMAD3-204ENST00000540846 NEUROD1Q13562 356 aa17.97■□□□□ 0.47
SMAD3-204ENST00000540846 PTPRMP28827 1452 aa17.96■□□□□ 0.47
SMAD3-204ENST00000540846 TMEM131LA2VDJ0 1609 aa17.96■□□□□ 0.47
SMAD3-204ENST00000540846 CEBPAP49715 358 aaPredicted RBP17.96■□□□□ 0.46
SMAD3-204ENST00000540846 IFT172Q9UG01 1749 aa17.95■□□□□ 0.46
SMAD3-204ENST00000540846 TONSLQ96HA7 1378 aa17.95■□□□□ 0.46
SMAD3-204ENST00000540846 KDM5AP29375 1690 aaKnown RBP17.94■□□□□ 0.46
SMAD3-204ENST00000540846 MYO3AQ8NEV4 1616 aa17.94■□□□□ 0.46
SMAD3-204ENST00000540846 TNRQ92752 1358 aa17.93■□□□□ 0.46
SMAD3-204ENST00000540846 KDM4FA0A1W2PPD8 638 aa17.91■□□□□ 0.46
SMAD3-204ENST00000540846 UBR1Q8IWV7 1749 aa17.91■□□□□ 0.46
SMAD3-204ENST00000540846 ZNF142P52746 1687 aaPredicted RBP17.91■□□□□ 0.46
SMAD3-204ENST00000540846 IDI1Q13907 227 aa17.91■□□□□ 0.46
SMAD3-204ENST00000540846 SLC52A1Q9NWF4 448 aa17.91■□□□□ 0.46
SMAD3-204ENST00000540846 NLRP1Q9C000 1473 aa17.9■□□□□ 0.46
SMAD3-204ENST00000540846 PPLO60437 1756 aa17.9■□□□□ 0.46
SMAD3-204ENST00000540846 PPP1R15AO75807 674 aaPredicted RBP17.89■□□□□ 0.45
SMAD3-204ENST00000540846 DIEXFQ68CQ4 756 aaKnown RBP17.89■□□□□ 0.45
SMAD3-204ENST00000540846 SETD1BQ9UPS6 1966 aaKnown RBP17.89■□□□□ 0.45
SMAD3-204ENST00000540846 L3MBTL2Q969R5 705 aa17.87■□□□□ 0.45
SMAD3-204ENST00000540846 A2ML1A8K2U0 1454 aa17.87■□□□□ 0.45
SMAD3-204ENST00000540846 NEXMIFQ5QGS0 1516 aa17.86■□□□□ 0.45
SMAD3-204ENST00000540846 CEP170BQ9Y4F5 1589 aaPredicted RBP17.86■□□□□ 0.45
SMAD3-204ENST00000540846 MYOM2P54296 1465 aa17.82■□□□□ 0.44
SMAD3-204ENST00000540846 RGL3Q3MIN7 710 aa17.82■□□□□ 0.44
SMAD3-204ENST00000540846 UHRF1BP1Q6BDS2 1440 aa17.81■□□□□ 0.44
SMAD3-204ENST00000540846 PLPPR3Q6T4P5 718 aa17.81■□□□□ 0.44
SMAD3-204ENST00000540846 ZFYVE9O95405 1425 aa17.8■□□□□ 0.44
SMAD3-204ENST00000540846 NRXN1Q9ULB1 1477 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms