RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 SMC4Q9NTJ3 1288 aa17.9■□□□□ 0.46
USP3-204ENST00000540797 EVA1CP58658 441 aa17.9■□□□□ 0.46
USP3-204ENST00000540797 ARHGAP5Q13017 1502 aa17.9■□□□□ 0.46
USP3-204ENST00000540797 TULP1O00294 542 aaPredicted RBP17.89■□□□□ 0.45
USP3-204ENST00000540797 MCCP23508 829 aa17.89■□□□□ 0.45
USP3-204ENST00000540797 CHMP3Q9Y3E7 222 aa17.88■□□□□ 0.45
USP3-204ENST00000540797 KIF21BO75037 1637 aa17.88■□□□□ 0.45
USP3-204ENST00000540797 PHLDB1Q86UU1 1377 aa17.87■□□□□ 0.45
USP3-204ENST00000540797 USP47Q96K76 1375 aa17.87■□□□□ 0.45
USP3-204ENST00000540797 CFAP44Q96MT7 982 aa17.87■□□□□ 0.45
USP3-204ENST00000540797 HDAC5Q9UQL6 1122 aa17.87■□□□□ 0.45
USP3-204ENST00000540797 LRRC9Q6ZRR7 1453 aa17.86■□□□□ 0.45
USP3-204ENST00000540797 RWDD1Q9H446 243 aaPredicted RBP17.86■□□□□ 0.45
USP3-204ENST00000540797 ANKRD50Q9ULJ7 1429 aa17.86■□□□□ 0.45
USP3-204ENST00000540797 FYCO1Q9BQS8 1478 aa17.86■□□□□ 0.45
USP3-204ENST00000540797 PSME1Q06323 249 aa17.86■□□□□ 0.45
USP3-204ENST00000540797 NCOA2Q15596 1464 aa17.86■□□□□ 0.45
USP3-204ENST00000540797 SNAPC4Q5SXM2 1469 aa17.86■□□□□ 0.45
USP3-204ENST00000540797 POLA1P09884 1462 aaPredicted RBP17.86■□□□□ 0.45
USP3-204ENST00000540797 TAF7LQ5H9L4 462 aa17.85■□□□□ 0.45
USP3-204ENST00000540797 SLC4A10Q6U841 1118 aa17.85■□□□□ 0.45
USP3-204ENST00000540797 MYBBP1AQ9BQG0 1328 aaKnown RBP17.85■□□□□ 0.45
USP3-204ENST00000540797 ISY1Q9ULR0 285 aaKnown RBP17.85■□□□□ 0.45
USP3-204ENST00000540797 SYNJ1O43426 1573 aa17.85■□□□□ 0.45
USP3-204ENST00000540797 C1orf141Q5JVX7 400 aa17.84■□□□□ 0.45
USP3-204ENST00000540797 GORABQ5T7V8 394 aa17.84■□□□□ 0.45
USP3-204ENST00000540797 KIAA1211Q6ZU35 1233 aa17.83■□□□□ 0.44
USP3-204ENST00000540797 RRP7AQ9Y3A4 280 aaKnown RBP17.83■□□□□ 0.44
USP3-204ENST00000540797 STAC3Q96MF2 364 aa17.82■□□□□ 0.44
USP3-204ENST00000540797 ERICH3Q5RHP9 1530 aa17.81■□□□□ 0.44
USP3-204ENST00000540797 HSCBQ8IWL3 235 aa17.81■□□□□ 0.44
USP3-204ENST00000540797 ATF3P18847 181 aa17.81■□□□□ 0.44
USP3-204ENST00000540797 CENPJQ9HC77 1338 aaPredicted RBP17.81■□□□□ 0.44
USP3-204ENST00000540797 GTF2E1P29083 439 aaPredicted RBP17.81■□□□□ 0.44
USP3-204ENST00000540797 CLUAP1Q96AJ1 413 aa17.8■□□□□ 0.44
USP3-204ENST00000540797 HMMRO75330 724 aa17.8■□□□□ 0.44
USP3-204ENST00000540797 TRIM44Q96DX7 344 aaPredicted RBP17.8■□□□□ 0.44
USP3-204ENST00000540797 PDE3BQ13370 1112 aa17.79■□□□□ 0.44
USP3-204ENST00000540797 TEFQ10587 303 aa17.78■□□□□ 0.44
USP3-204ENST00000540797 PTMAP06454 111 aaKnown RBP17.77■□□□□ 0.44
USP3-204ENST00000540797 PMFBP1Q8TBY8 1022 aa17.77■□□□□ 0.43
USP3-204ENST00000540797 MEX3CQ5U5Q3 659 aaKnown RBP17.77■□□□□ 0.43
USP3-204ENST00000540797 DNMBPQ6XZF7 1577 aa17.76■□□□□ 0.43
USP3-204ENST00000540797 GPATCH3Q96I76 525 aa17.76■□□□□ 0.43
USP3-204ENST00000540797 DNAJC5BQ9UF47 199 aa17.76■□□□□ 0.43
USP3-204ENST00000540797 GOLGA6L4A6NEF3 574 aa17.75■□□□□ 0.43
USP3-204ENST00000540797 G3V3G9 751 aa17.75■□□□□ 0.43
USP3-204ENST00000540797 DCAF8Q5TAQ9 597 aa17.75■□□□□ 0.43
USP3-204ENST00000540797 TOP2BQ02880 1626 aa17.75■□□□□ 0.43
USP3-204ENST00000540797 ELL2O00472 640 aaPredicted RBP17.74■□□□□ 0.43
USP3-204ENST00000540797 ARAP1Q96P48 1450 aa17.74■□□□□ 0.43
USP3-204ENST00000540797 DIAPH1O60610 1272 aaKnown RBP17.74■□□□□ 0.43
USP3-204ENST00000540797 TMEM132EQ6IEE7 984 aa17.74■□□□□ 0.43
USP3-204ENST00000540797 TXNDC2Q86VQ3 553 aa17.74■□□□□ 0.43
USP3-204ENST00000540797 EFCAB5A4FU69 1503 aa17.74■□□□□ 0.43
USP3-204ENST00000540797 TTC5Q8N0Z6 440 aa17.73■□□□□ 0.43
USP3-204ENST00000540797 ERICH6BQ5W0A0 696 aa17.72■□□□□ 0.43
USP3-204ENST00000540797 SCAPERQ9BY12 1400 aa17.72■□□□□ 0.43
USP3-204ENST00000540797 PRKRIP1Q9H875 184 aaPredicted RBP17.71■□□□□ 0.43
USP3-204ENST00000540797 PLEKHH2Q8IVE3 1493 aa17.71■□□□□ 0.43
USP3-204ENST00000540797 PLCB2Q00722 1185 aa17.7■□□□□ 0.42
USP3-204ENST00000540797 TRIM6-TRIM34B2RNG4 842 aa17.7■□□□□ 0.42
USP3-204ENST00000540797 GNL2Q13823 731 aaKnown RBP17.7■□□□□ 0.42
USP3-204ENST00000540797 TROQ12816 1431 aaPredicted RBP17.69■□□□□ 0.42
USP3-204ENST00000540797 PRXQ9BXM0 1461 aa17.69■□□□□ 0.42
USP3-204ENST00000540797 CABP2Q9NPB3 220 aa17.69■□□□□ 0.42
USP3-204ENST00000540797 RAPGEF3O95398 923 aa17.69■□□□□ 0.42
USP3-204ENST00000540797 SPRYD3Q8NCJ5 442 aa17.68■□□□□ 0.42
USP3-204ENST00000540797 MSH5O43196 834 aa17.68■□□□□ 0.42
USP3-204ENST00000540797 FRAT2O75474 233 aaPredicted RBP17.68■□□□□ 0.42
USP3-204ENST00000540797 SYTL4Q96C24 671 aaPredicted RBP17.68■□□□□ 0.42
USP3-204ENST00000540797 NOP58Q9Y2X3 529 aaKnown RBP17.67■□□□□ 0.42
USP3-204ENST00000540797 THEMISQ8N1K5 641 aaPredicted RBP17.67■□□□□ 0.42
USP3-204ENST00000540797 C9orf84Q5VXU9 1444 aa17.67■□□□□ 0.42
USP3-204ENST00000540797 MIA2Q96PC5 1412 aa17.67■□□□□ 0.42
USP3-204ENST00000540797 RRBP1Q9P2E9 1410 aaKnown RBP17.67■□□□□ 0.42
USP3-204ENST00000540797 LAMC3Q9Y6N6 1575 aa17.66■□□□□ 0.42
USP3-204ENST00000540797 E9PSI1 815 aa17.66■□□□□ 0.42
USP3-204ENST00000540797 PROSER2Q86WR7 435 aaPredicted RBP17.66■□□□□ 0.42
USP3-204ENST00000540797 CFAP70Q5T0N1 1121 aa17.66■□□□□ 0.42
USP3-204ENST00000540797 EIF2S2P20042 333 aaKnown RBP17.66■□□□□ 0.42
USP3-204ENST00000540797 NUTM2GQ5VZR2 741 aa17.66■□□□□ 0.42
USP3-204ENST00000540797 APAF1O14727 1248 aa17.65■□□□□ 0.42
USP3-204ENST00000540797 NGEFQ8N5V2 710 aa17.65■□□□□ 0.42
USP3-204ENST00000540797 KIAA0586Q9BVV6 1533 aa17.65■□□□□ 0.42
USP3-204ENST00000540797 BCL2L13Q9BXK5 485 aa17.65■□□□□ 0.42
USP3-204ENST00000540797 EHBP1L1Q8N3D4 1523 aa17.65■□□□□ 0.42
USP3-204ENST00000540797 RAPGEF4Q8WZA2 1011 aa17.65■□□□□ 0.42
USP3-204ENST00000540797 GGNBP2Q9H3C7 697 aa17.64■□□□□ 0.41
USP3-204ENST00000540797 BICRAQ9NZM4 1560 aa17.64■□□□□ 0.41
USP3-204ENST00000540797 NLRP6P59044 892 aa17.64■□□□□ 0.41
USP3-204ENST00000540797 RIPK4P57078 832 aa17.63■□□□□ 0.41
USP3-204ENST00000540797 NEXNQ0ZGT2 675 aa17.63■□□□□ 0.41
USP3-204ENST00000540797 HECW1Q76N89 1606 aa17.63■□□□□ 0.41
USP3-204ENST00000540797 NLRP2Q9NX02 1062 aa17.62■□□□□ 0.41
USP3-204ENST00000540797 TCERG1O14776 1098 aaKnown RBP17.62■□□□□ 0.41
USP3-204ENST00000540797 ESCO1Q5FWF5 840 aa17.61■□□□□ 0.41
USP3-204ENST00000540797 GPRASP1Q5JY77 1395 aa17.61■□□□□ 0.41
USP3-204ENST00000540797 GOLGA6L6A8MZA4 724 aa17.61■□□□□ 0.41
USP3-204ENST00000540797 ZKSCAN2Q63HK3 967 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms