RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 KTN1Q86UP2 1357 aaKnown RBP13.31□□□□□ -0.28
CLIP1-209ENST00000537178 CASKIN1Q8WXD9 1431 aa13.31□□□□□ -0.28
CLIP1-209ENST00000537178 HECW1Q76N89 1606 aa13.31□□□□□ -0.28
CLIP1-209ENST00000537178 CUL7Q14999 1698 aa13.31□□□□□ -0.28
CLIP1-209ENST00000537178 GOLGA6L3A6NEY3 463 aa13.3□□□□□ -0.28
CLIP1-209ENST00000537178 ABCA10Q8WWZ4 1543 aa13.3□□□□□ -0.28
CLIP1-209ENST00000537178 GORABQ5T7V8 394 aa13.3□□□□□ -0.28
CLIP1-209ENST00000537178 ITPRIPQ8IWB1 547 aa13.3□□□□□ -0.28
CLIP1-209ENST00000537178 RCAN3Q9UKA8 241 aa13.3□□□□□ -0.28
CLIP1-209ENST00000537178 HFM1A2PYH4 1435 aa13.3□□□□□ -0.28
CLIP1-209ENST00000537178 KDM6BO15054 1643 aa13.3□□□□□ -0.28
CLIP1-209ENST00000537178 HMMRO75330 724 aa13.29□□□□□ -0.28
CLIP1-209ENST00000537178 PMFBP1Q8TBY8 1022 aa13.29□□□□□ -0.28
CLIP1-209ENST00000537178 GPATCH3Q96I76 525 aa13.29□□□□□ -0.28
CLIP1-209ENST00000537178 U2AF1L5P0DN76 240 aaPredicted RBP13.29□□□□□ -0.28
CLIP1-209ENST00000537178 U2AF1Q01081 240 aaKnown RBP eCLIP13.29□□□□□ -0.28
CLIP1-209ENST00000537178 STK31Q9BXU1 1019 aa13.29□□□□□ -0.28
CLIP1-209ENST00000537178 MAGI3Q5TCQ9 1506 aa13.29□□□□□ -0.28
CLIP1-209ENST00000537178 TMX4Q9H1E5 349 aaPredicted RBP13.28□□□□□ -0.28
CLIP1-209ENST00000537178 CEP89Q96ST8 783 aa13.28□□□□□ -0.28
CLIP1-209ENST00000537178 TPM3P06753 285 aa13.28□□□□□ -0.28
CLIP1-209ENST00000537178 PRM3Q9NNZ6 103 aa13.28□□□□□ -0.28
CLIP1-209ENST00000537178 RASSF8Q8NHQ8 419 aa13.27□□□□□ -0.28
CLIP1-209ENST00000537178 KIF3AQ9Y496 699 aa13.27□□□□□ -0.28
CLIP1-209ENST00000537178 THOC2Q8NI27 1593 aaKnown RBP13.27□□□□□ -0.29
CLIP1-209ENST00000537178 SAFB2Q14151 953 aaKnown RBP eCLIP13.27□□□□□ -0.29
CLIP1-209ENST00000537178 ARID3AQ99856 593 aa13.26□□□□□ -0.29
CLIP1-209ENST00000537178 GRIN2BQ13224 1484 aa13.26□□□□□ -0.29
CLIP1-209ENST00000537178 KIF21AQ7Z4S6 1674 aa13.26□□□□□ -0.29
CLIP1-209ENST00000537178 HSP90B1P14625 803 aaKnown RBP13.26□□□□□ -0.29
CLIP1-209ENST00000537178 RALBP1Q15311 655 aa13.26□□□□□ -0.29
CLIP1-209ENST00000537178 ZNF330Q9Y3S2 320 aaPredicted RBP13.26□□□□□ -0.29
CLIP1-209ENST00000537178 NAIPQ13075 1403 aa13.26□□□□□ -0.29
CLIP1-209ENST00000537178 SPAG9O60271 1321 aaKnown RBP13.25□□□□□ -0.29
CLIP1-209ENST00000537178 CARMIL1Q5VZK9 1371 aa13.25□□□□□ -0.29
CLIP1-209ENST00000537178 FHAD1B1AJZ9 1412 aa13.25□□□□□ -0.29
CLIP1-209ENST00000537178 PHF14O94880 888 aa13.25□□□□□ -0.29
CLIP1-209ENST00000537178 CSB-PGBD3P0DP91 1061 aa13.25□□□□□ -0.29
CLIP1-209ENST00000537178 DNMBPQ6XZF7 1577 aa13.25□□□□□ -0.29
CLIP1-209ENST00000537178 HSPA5P11021 654 aaKnown RBP13.24□□□□□ -0.29
CLIP1-209ENST00000537178 MFAP1P55081 439 aaKnown RBP13.24□□□□□ -0.29
CLIP1-209ENST00000537178 FGD6Q6ZV73 1430 aa13.24□□□□□ -0.29
CLIP1-209ENST00000537178 TAF7LQ5H9L4 462 aa13.24□□□□□ -0.29
CLIP1-209ENST00000537178 UACAQ9BZF9 1416 aa13.24□□□□□ -0.29
CLIP1-209ENST00000537178 TCOF1Q13428 1488 aaKnown RBP13.23□□□□□ -0.29
CLIP1-209ENST00000537178 TRIM6-TRIM34B2RNG4 842 aa13.23□□□□□ -0.29
CLIP1-209ENST00000537178 UGGT2Q9NYU1 1516 aa13.23□□□□□ -0.29
CLIP1-209ENST00000537178 ANO8Q9HCE9 1232 aaPredicted RBP13.23□□□□□ -0.29
CLIP1-209ENST00000537178 MLECQ14165 292 aa13.22□□□□□ -0.29
CLIP1-209ENST00000537178 STK26Q9P289 416 aa13.22□□□□□ -0.29
CLIP1-209ENST00000537178 SMC4Q9NTJ3 1288 aa13.21□□□□□ -0.29
CLIP1-209ENST00000537178 ST18O60284 1047 aa13.21□□□□□ -0.3
CLIP1-209ENST00000537178 SF3A1Q15459 793 aaKnown RBP13.21□□□□□ -0.3
CLIP1-209ENST00000537178 CHMP3Q9Y3E7 222 aa13.21□□□□□ -0.3
CLIP1-209ENST00000537178 CADPSQ9ULU8 1353 aa13.21□□□□□ -0.3
CLIP1-209ENST00000537178 PAK3O75914 559 aaPredicted RBP13.2□□□□□ -0.3
CLIP1-209ENST00000537178 PDE4CQ08493 712 aa13.2□□□□□ -0.3
CLIP1-209ENST00000537178 IPO9Q96P70 1041 aaKnown RBP13.2□□□□□ -0.3
CLIP1-209ENST00000537178 CCDC18Q5T9S5 1454 aa13.2□□□□□ -0.3
CLIP1-209ENST00000537178 CHMP4CQ96CF2 233 aa13.2□□□□□ -0.3
CLIP1-209ENST00000537178 KIF16BQ96L93 1317 aa13.2□□□□□ -0.3
CLIP1-209ENST00000537178 PKD2Q13563 968 aa13.19□□□□□ -0.3
CLIP1-209ENST00000537178 CREBRFQ8IUR6 639 aa13.19□□□□□ -0.3
CLIP1-209ENST00000537178 POLA1P09884 1462 aaPredicted RBP13.19□□□□□ -0.3
CLIP1-209ENST00000537178 GGT6Q6P531 493 aa13.18□□□□□ -0.3
CLIP1-209ENST00000537178 SPATA31E1Q6ZUB1 1445 aa13.18□□□□□ -0.3
CLIP1-209ENST00000537178 MARCH6O60337 910 aa13.18□□□□□ -0.3
CLIP1-209ENST00000537178 LMOD3Q0VAK6 560 aa13.18□□□□□ -0.3
CLIP1-209ENST00000537178 AKNAQ7Z591 1439 aa13.18□□□□□ -0.3
CLIP1-209ENST00000537178 TSR1Q2NL82 804 aaKnown RBP13.17□□□□□ -0.3
CLIP1-209ENST00000537178 FHOD3Q2V2M9 1422 aa13.17□□□□□ -0.3
CLIP1-209ENST00000537178 PDE3BQ13370 1112 aa13.17□□□□□ -0.3
CLIP1-209ENST00000537178 SETQ01105 290 aaPredicted RBP13.16□□□□□ -0.3
CLIP1-209ENST00000537178 TOMM22Q9NS69 142 aa13.16□□□□□ -0.3
CLIP1-209ENST00000537178 DDX11L8A8MPP1 907 aa13.16□□□□□ -0.3
CLIP1-209ENST00000537178 TERF2IPQ9NYB0 399 aa13.16□□□□□ -0.3
CLIP1-209ENST00000537178 SUPT6HQ7KZ85 1726 aaKnown RBP13.16□□□□□ -0.3
CLIP1-209ENST00000537178 TOPBP1Q92547 1522 aa13.16□□□□□ -0.3
CLIP1-209ENST00000537178 ATP6V1DQ9Y5K8 247 aa13.16□□□□□ -0.3
CLIP1-209ENST00000537178 G3V3G9 751 aa13.15□□□□□ -0.3
CLIP1-209ENST00000537178 DCAF8Q5TAQ9 597 aa13.15□□□□□ -0.3
CLIP1-209ENST00000537178 SLC4A10Q6U841 1118 aa13.15□□□□□ -0.3
CLIP1-209ENST00000537178 FANCIQ9NVI1 1328 aa13.15□□□□□ -0.3
CLIP1-209ENST00000537178 CENPJQ9HC77 1338 aaPredicted RBP13.14□□□□□ -0.31
CLIP1-209ENST00000537178 NOL8Q76FK4 1167 aaKnown RBP13.14□□□□□ -0.31
CLIP1-209ENST00000537178 GPS2Q13227 327 aa13.14□□□□□ -0.31
CLIP1-209ENST00000537178 TPM1P09493 284 aa13.14□□□□□ -0.31
CLIP1-209ENST00000537178 TPD52L1Q16890 204 aaPredicted RBP13.14□□□□□ -0.31
CLIP1-209ENST00000537178 ROCK2O75116 1388 aaKnown RBP13.14□□□□□ -0.31
CLIP1-209ENST00000537178 CLUAP1Q96AJ1 413 aa13.14□□□□□ -0.31
CLIP1-209ENST00000537178 EIF3AQ14152 1382 aaKnown RBP13.13□□□□□ -0.31
CLIP1-209ENST00000537178 PES1O00541 588 aaKnown RBP13.13□□□□□ -0.31
CLIP1-209ENST00000537178 FRAT2O75474 233 aaPredicted RBP13.13□□□□□ -0.31
CLIP1-209ENST00000537178 GOLGA6L19H0YKK7 550 aa13.13□□□□□ -0.31
CLIP1-209ENST00000537178 CCDC70Q6NSX1 233 aa13.13□□□□□ -0.31
CLIP1-209ENST00000537178 TEX14Q8IWB6 1497 aa13.13□□□□□ -0.31
CLIP1-209ENST00000537178 HSP90AA2PQ14568 343 aaPredicted RBP13.13□□□□□ -0.31
CLIP1-209ENST00000537178 RAD54L2Q9Y4B4 1467 aa13.12□□□□□ -0.31
CLIP1-209ENST00000537178 BECN2A8MW95 431 aa13.12□□□□□ -0.31
CLIP1-209ENST00000537178 NLRP13Q86W25 1043 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms