RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 PPP1R3GB7ZBB8 358 aa11.21□□□□□ -0.61
CD44-231ENST00000531110 RBM33Q96EV2 1170 aaKnown RBP11.21□□□□□ -0.61
CD44-231ENST00000531110 RBM27Q9P2N5 1060 aaKnown RBP11.21□□□□□ -0.61
CD44-231ENST00000531110 POTEB3A0JP26 581 aa11.2□□□□□ -0.62
CD44-231ENST00000531110 ARHGAP33O14559 1287 aa11.2□□□□□ -0.62
CD44-231ENST00000531110 FCHSD2O94868 740 aa11.2□□□□□ -0.62
CD44-231ENST00000531110 PTGDRQ13258 359 aa11.2□□□□□ -0.62
CD44-231ENST00000531110 POTEBQ6S5H4 581 aa11.2□□□□□ -0.62
CD44-231ENST00000531110 GPR37O15354 613 aa11.19□□□□□ -0.62
CD44-231ENST00000531110 TSR1Q2NL82 804 aaKnown RBP11.19□□□□□ -0.62
CD44-231ENST00000531110 NUTM2FA1L443 756 aa11.18□□□□□ -0.62
CD44-231ENST00000531110 HIC1Q14526 733 aa11.18□□□□□ -0.62
CD44-231ENST00000531110 SLC4A5Q9BY07 1137 aa11.18□□□□□ -0.62
CD44-231ENST00000531110 POTEGQ6S5H5 508 aa11.17□□□□□ -0.62
CD44-231ENST00000531110 NPDC1Q9NQX5 325 aaPredicted RBP11.17□□□□□ -0.62
CD44-231ENST00000531110 POTEMA6NI47 508 aa11.16□□□□□ -0.62
CD44-231ENST00000531110 ONECUT3O60422 494 aaPredicted RBP11.16□□□□□ -0.62
CD44-231ENST00000531110 POTEEQ6S8J3 1075 aa11.15□□□□□ -0.62
CD44-231ENST00000531110 ZC3H15Q8WU90 426 aaKnown RBP11.15□□□□□ -0.62
CD44-231ENST00000531110 KCNK17Q96T54 332 aa11.15□□□□□ -0.62
CD44-231ENST00000531110 CDHR5Q9HBB8 845 aa11.15□□□□□ -0.62
CD44-231ENST00000531110 GNPATO15228 680 aa11.13□□□□□ -0.63
CD44-231ENST00000531110 ZMYND10O75800 440 aa11.13□□□□□ -0.63
CD44-231ENST00000531110 TK2O00142 265 aa11.12□□□□□ -0.63
CD44-231ENST00000531110 COL9A1P20849 921 aa11.12□□□□□ -0.63
CD44-231ENST00000531110 PCDH10Q9P2E7 1040 aa11.12□□□□□ -0.63
CD44-231ENST00000531110 PRSS12P56730 875 aa11.11□□□□□ -0.63
CD44-231ENST00000531110 TTC13Q8NBP0 860 aa11.11□□□□□ -0.63
CD44-231ENST00000531110 ZBED2Q9BTP6 218 aa11.11□□□□□ -0.63
CD44-231ENST00000531110 PSEN2P49810 448 aa11.09□□□□□ -0.63
CD44-231ENST00000531110 LSM11P83369 360 aaKnown RBP eCLIP11.09□□□□□ -0.63
CD44-231ENST00000531110 BARGINQ6ZT62 677 aa11.09□□□□□ -0.63
CD44-231ENST00000531110 CDCA7LQ96GN5 454 aa11.08□□□□□ -0.64
CD44-231ENST00000531110 TRIM6-TRIM34B2RNG4 842 aa11.07□□□□□ -0.64
CD44-231ENST00000531110 AXIN2Q9Y2T1 843 aa11.07□□□□□ -0.64
CD44-231ENST00000531110 MAP2K5Q13163 448 aa11.06□□□□□ -0.64
CD44-231ENST00000531110 DMRTA1Q5VZB9 504 aa11.06□□□□□ -0.64
CD44-231ENST00000531110 MINK1Q8N4C8 1332 aaPredicted RBP11.06□□□□□ -0.64
CD44-231ENST00000531110 CDAN1Q8IWY9 1227 aa11.05□□□□□ -0.64
CD44-231ENST00000531110 KRTAP3-3Q9BYR6 98 aa11.05□□□□□ -0.64
CD44-231ENST00000531110 KRTAP3-2Q9BYR7 98 aa11.05□□□□□ -0.64
CD44-231ENST00000531110 PADI6Q6TGC4 694 aa11.04□□□□□ -0.64
CD44-231ENST00000531110 RABGEF1Q9UJ41 708 aa11.04□□□□□ -0.64
CD44-231ENST00000531110 VPS9D1Q9Y2B5 631 aa11.04□□□□□ -0.64
CD44-231ENST00000531110 TPRNQ4KMQ1 711 aa11.03□□□□□ -0.64
CD44-231ENST00000531110 PACS2Q86VP3 889 aa11.03□□□□□ -0.64
CD44-231ENST00000531110 TSKSQ9UJT2 592 aa11.02□□□□□ -0.65
CD44-231ENST00000531110 NBPF26B4DH59 902 aa11.01□□□□□ -0.65
CD44-231ENST00000531110 ADGRD1Q6QNK2 874 aa11.01□□□□□ -0.65
CD44-231ENST00000531110 IRF6O14896 467 aa11□□□□□ -0.65
CD44-231ENST00000531110 OATP04181 439 aa11□□□□□ -0.65
CD44-231ENST00000531110 PROX2Q3B8N5 592 aa11□□□□□ -0.65
CD44-231ENST00000531110 BHMG1C9JSJ3 638 aaPredicted RBP10.99□□□□□ -0.65
CD44-231ENST00000531110 FECHP22830 423 aa10.99□□□□□ -0.65
CD44-231ENST00000531110 NBPF3Q9H094 633 aa10.99□□□□□ -0.65
CD44-231ENST00000531110 FAM198AQ9UFP1 575 aa10.99□□□□□ -0.65
CD44-231ENST00000531110 ADGRG1Q9Y653 693 aa10.99□□□□□ -0.65
CD44-231ENST00000531110 HRO43593 1189 aa10.98□□□□□ -0.65
CD44-231ENST00000531110 LAPTM4BQ86VI4 370 aa10.98□□□□□ -0.65
CD44-231ENST00000531110 KIAA1468Q9P260 1216 aa10.97□□□□□ -0.65
CD44-231ENST00000531110 KRI1Q8N9T8 703 aaKnown RBP10.96□□□□□ -0.65
CD44-231ENST00000531110 RBM46Q8TBY0 533 aaKnown RBP10.96□□□□□ -0.65
CD44-231ENST00000531110 TATDN2Q93075 761 aa10.96□□□□□ -0.65
CD44-231ENST00000531110 AK7Q96M32 723 aa10.96□□□□□ -0.65
CD44-231ENST00000531110 EYA1Q99502 592 aa10.95□□□□□ -0.66
CD44-231ENST00000531110 ANKRD13DQ6ZTN6 518 aa10.94□□□□□ -0.66
CD44-231ENST00000531110 METTL3Q86U44 580 aaKnown RBP10.94□□□□□ -0.66
CD44-231ENST00000531110 PXYLP1Q8TE99 480 aa10.94□□□□□ -0.66
CD44-231ENST00000531110 CCDC102AQ96A19 550 aa10.94□□□□□ -0.66
CD44-231ENST00000531110 FAM98CQ17RN3 349 aaKnown RBP10.92□□□□□ -0.66
CD44-231ENST00000531110 NUDT18Q6ZVK8 323 aa10.92□□□□□ -0.66
CD44-231ENST00000531110 PNMA3Q9UL41 463 aa10.92□□□□□ -0.66
CD44-231ENST00000531110 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.91□□□□□ -0.66
CD44-231ENST00000531110 SLC24A3Q9HC58 644 aa10.91□□□□□ -0.66
CD44-231ENST00000531110 AMHR2Q16671 573 aa10.9□□□□□ -0.66
CD44-231ENST00000531110 MRPL50Q8N5N7 158 aaKnown RBP10.9□□□□□ -0.66
CD44-231ENST00000531110 DNAJB2P25686 324 aa10.88□□□□□ -0.67
CD44-231ENST00000531110 STAC3Q96MF2 364 aa10.88□□□□□ -0.67
CD44-231ENST00000531110 C3orf80F5H4A9 247 aa10.87□□□□□ -0.67
CD44-231ENST00000531110 TRIM66O15016 1216 aa10.87□□□□□ -0.67
CD44-231ENST00000531110 PRKCSHP14314 528 aaPredicted RBP10.87□□□□□ -0.67
CD44-231ENST00000531110 RCCD1A6NED2 376 aa10.85□□□□□ -0.67
CD44-231ENST00000531110 FAM161AQ3B820 660 aa10.85□□□□□ -0.67
CD44-231ENST00000531110 TMEM134Q9H6X4 195 aa10.85□□□□□ -0.67
CD44-231ENST00000531110 SEPT9Q9UHD8 586 aaPredicted RBP10.85□□□□□ -0.67
CD44-231ENST00000531110 ZFRQ96KR1 1074 aaKnown RBP10.84□□□□□ -0.67
CD44-231ENST00000531110 SMAPO00193 183 aa10.83□□□□□ -0.68
CD44-231ENST00000531110 CLCN1P35523 988 aa10.83□□□□□ -0.68
CD44-231ENST00000531110 PHOX2BQ99453 314 aa10.83□□□□□ -0.68
CD44-231ENST00000531110 HDGFP51858 240 aaKnown RBP10.82□□□□□ -0.68
CD44-231ENST00000531110 TMUB1Q9BVT8 246 aa10.82□□□□□ -0.68
CD44-231ENST00000531110 DAXXQ9UER7 740 aaPredicted RBP10.81□□□□□ -0.68
CD44-231ENST00000531110 GOLGA8CPA6NN73 597 aa10.8□□□□□ -0.68
CD44-231ENST00000531110 SLC4A3P48751 1232 aa10.8□□□□□ -0.68
CD44-231ENST00000531110 PDE4DQ08499 809 aa10.8□□□□□ -0.68
CD44-231ENST00000531110 ANKK1Q8NFD2 765 aa10.8□□□□□ -0.68
CD44-231ENST00000531110 NECTIN2Q92692 538 aa10.8□□□□□ -0.68
CD44-231ENST00000531110 GPCPD1Q9NPB8 672 aa10.8□□□□□ -0.68
CD44-231ENST00000531110 SPNS2Q8IVW8 549 aa10.78□□□□□ -0.68
CD44-231ENST00000531110 MYT1LQ9UL68 1186 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms