RNA–Protein interactions for RNA: ENST00000528787.1

SSBP3-211, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 4

Gene SSBP3, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-211ENST00000528787 PTPRKQ15262 1439 aa11.77□□□□□ -0.53
SSBP3-211ENST00000528787 CNTLNQ9NXG0 1405 aa11.77□□□□□ -0.53
SSBP3-211ENST00000528787 RNF17Q9BXT8 1623 aaKnown RBP11.76□□□□□ -0.53
SSBP3-211ENST00000528787 KIF3BO15066 747 aa11.76□□□□□ -0.53
SSBP3-211ENST00000528787 DEPDC5O75140 1603 aa11.75□□□□□ -0.53
SSBP3-211ENST00000528787 UNC13BO14795 1591 aa11.73□□□□□ -0.53
SSBP3-211ENST00000528787 PRDM15P57071 1507 aaPredicted RBP11.73□□□□□ -0.53
SSBP3-211ENST00000528787 KDM5DQ9BY66 1539 aa11.73□□□□□ -0.53
SSBP3-211ENST00000528787 WASHC2CQ9Y4E1 1318 aa11.71□□□□□ -0.53
SSBP3-211ENST00000528787 GGT6Q6P531 493 aa11.71□□□□□ -0.53
SSBP3-211ENST00000528787 MROH2AA6NES4 1674 aa11.71□□□□□ -0.54
SSBP3-211ENST00000528787 FER1L4A9Z1Z3 1794 aa11.7□□□□□ -0.54
SSBP3-211ENST00000528787 TRIM52Q96A61 297 aa11.7□□□□□ -0.54
SSBP3-211ENST00000528787 PCGF6Q9BYE7 350 aa11.7□□□□□ -0.54
SSBP3-211ENST00000528787 IQGAP3Q86VI3 1631 aa11.7□□□□□ -0.54
SSBP3-211ENST00000528787 NUP155O75694 1391 aa11.69□□□□□ -0.54
SSBP3-211ENST00000528787 RAB3GAP2Q9H2M9 1393 aa11.69□□□□□ -0.54
SSBP3-211ENST00000528787 RPRD2Q5VT52 1461 aaKnown RBP11.69□□□□□ -0.54
SSBP3-211ENST00000528787 LMTK2Q8IWU2 1503 aa11.68□□□□□ -0.54
SSBP3-211ENST00000528787 TET3O43151 1660 aa11.68□□□□□ -0.54
SSBP3-211ENST00000528787 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.67□□□□□ -0.54
SSBP3-211ENST00000528787 VWDEQ8N2E2 1590 aa11.67□□□□□ -0.54
SSBP3-211ENST00000528787 ADAMTSL3P82987 1691 aa11.66□□□□□ -0.54
SSBP3-211ENST00000528787 ARHGAP31Q2M1Z3 1444 aa11.66□□□□□ -0.54
SSBP3-211ENST00000528787 MLECQ14165 292 aa11.65□□□□□ -0.54
SSBP3-211ENST00000528787 SLC4A1APQ9BWU0 796 aaKnown RBP11.65□□□□□ -0.54
SSBP3-211ENST00000528787 ABCC3O15438 1527 aa11.65□□□□□ -0.55
SSBP3-211ENST00000528787 CLTCQ00610 1675 aaKnown RBP11.65□□□□□ -0.55
SSBP3-211ENST00000528787 CAMSAP1Q5T5Y3 1602 aa11.64□□□□□ -0.55
SSBP3-211ENST00000528787 MROH1Q8NDA8 1641 aa11.64□□□□□ -0.55
SSBP3-211ENST00000528787 SETD1BQ9UPS6 1966 aaKnown RBP11.64□□□□□ -0.55
SSBP3-211ENST00000528787 CEP152O94986 1710 aa11.63□□□□□ -0.55
SSBP3-211ENST00000528787 EFCAB6Q5THR3 1501 aa11.63□□□□□ -0.55
SSBP3-211ENST00000528787 MADDQ8WXG6 1647 aa11.62□□□□□ -0.55
SSBP3-211ENST00000528787 SIGLEC1Q9BZZ2 1709 aa11.62□□□□□ -0.55
SSBP3-211ENST00000528787 PZPP20742 1482 aa11.62□□□□□ -0.55
SSBP3-211ENST00000528787 RIMS1Q86UR5 1692 aaKnown RBP11.62□□□□□ -0.55
SSBP3-211ENST00000528787 NPATQ14207 1427 aa11.61□□□□□ -0.55
SSBP3-211ENST00000528787 MPHOSPH9Q99550 1183 aa11.61□□□□□ -0.55
SSBP3-211ENST00000528787 ZMYM3Q14202 1370 aa11.61□□□□□ -0.55
SSBP3-211ENST00000528787 CLSPNQ9HAW4 1339 aa11.6□□□□□ -0.55
SSBP3-211ENST00000528787 C3P01024 1663 aa11.59□□□□□ -0.55
SSBP3-211ENST00000528787 SLC52A1Q9NWF4 448 aa11.58□□□□□ -0.56
SSBP3-211ENST00000528787 SPHKAPQ2M3C7 1700 aa11.57□□□□□ -0.56
SSBP3-211ENST00000528787 E9PCH4 1651 aa11.57□□□□□ -0.56
SSBP3-211ENST00000528787 PREX1Q8TCU6 1659 aa11.57□□□□□ -0.56
SSBP3-211ENST00000528787 PKD2Q13563 968 aa11.57□□□□□ -0.56
SSBP3-211ENST00000528787 PTPRMP28827 1452 aa11.57□□□□□ -0.56
SSBP3-211ENST00000528787 NLRP1Q9C000 1473 aa11.56□□□□□ -0.56
SSBP3-211ENST00000528787 SPATA31D1Q6ZQQ2 1576 aa11.55□□□□□ -0.56
SSBP3-211ENST00000528787 CFAP65Q6ZU64 1925 aaKnown RBP11.55□□□□□ -0.56
SSBP3-211ENST00000528787 KDM5AP29375 1690 aaKnown RBP11.55□□□□□ -0.56
SSBP3-211ENST00000528787 CCDC144AA2RUR9 1427 aa11.54□□□□□ -0.56
SSBP3-211ENST00000528787 HDGFP51858 240 aaKnown RBP11.54□□□□□ -0.56
SSBP3-211ENST00000528787 ERVK-7P63135 1459 aa11.54□□□□□ -0.56
SSBP3-211ENST00000528787 TRPM2O94759 1503 aa11.54□□□□□ -0.56
SSBP3-211ENST00000528787 TNRQ92752 1358 aa11.54□□□□□ -0.56
SSBP3-211ENST00000528787 KIF1BO60333 1816 aa11.53□□□□□ -0.56
SSBP3-211ENST00000528787 PTPRTO14522 1441 aa11.53□□□□□ -0.56
SSBP3-211ENST00000528787 STAC3Q96MF2 364 aa11.53□□□□□ -0.56
SSBP3-211ENST00000528787 NOS1P29475 1434 aa11.52□□□□□ -0.56
SSBP3-211ENST00000528787 STAG3Q9UJ98 1225 aa11.52□□□□□ -0.57
SSBP3-211ENST00000528787 UHRF1BP1Q6BDS2 1440 aa11.52□□□□□ -0.57
SSBP3-211ENST00000528787 CCER1Q8TC90 406 aaPredicted RBP11.51□□□□□ -0.57
SSBP3-211ENST00000528787 DHX57Q6P158 1386 aaKnown RBP11.51□□□□□ -0.57
SSBP3-211ENST00000528787 NEURL4Q96JN8 1562 aa11.5□□□□□ -0.57
SSBP3-211ENST00000528787 KDM4FA0A1W2PPD8 638 aa11.5□□□□□ -0.57
SSBP3-211ENST00000528787 TIMELESSQ9UNS1 1208 aa11.49□□□□□ -0.57
SSBP3-211ENST00000528787 PIK3C2BO00750 1634 aa11.49□□□□□ -0.57
SSBP3-211ENST00000528787 MYO3AQ8NEV4 1616 aa11.49□□□□□ -0.57
SSBP3-211ENST00000528787 ZNF142P52746 1687 aaPredicted RBP11.49□□□□□ -0.57
SSBP3-211ENST00000528787 AEBP2Q6ZN18 517 aaPredicted RBP11.48□□□□□ -0.57
SSBP3-211ENST00000528787 THEMISQ8N1K5 641 aaPredicted RBP11.48□□□□□ -0.57
SSBP3-211ENST00000528787 ANKRD30BQ9BXX2 1392 aa11.48□□□□□ -0.57
SSBP3-211ENST00000528787 A2ML1A8K2U0 1454 aa11.48□□□□□ -0.57
SSBP3-211ENST00000528787 RPGRIP1LQ68CZ1 1315 aa11.47□□□□□ -0.57
SSBP3-211ENST00000528787 UGGT1Q9NYU2 1555 aa11.46□□□□□ -0.57
SSBP3-211ENST00000528787 CEP170BQ9Y4F5 1589 aaPredicted RBP11.46□□□□□ -0.57
SSBP3-211ENST00000528787 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.46□□□□□ -0.57
SSBP3-211ENST00000528787 SYNMO15061 1565 aa11.45□□□□□ -0.58
SSBP3-211ENST00000528787 ADGRB3O60242 1522 aa11.45□□□□□ -0.58
SSBP3-211ENST00000528787 CEBPAP49715 358 aaPredicted RBP11.45□□□□□ -0.58
SSBP3-211ENST00000528787 FBXO31Q5XUX0 539 aaPredicted RBP11.45□□□□□ -0.58
SSBP3-211ENST00000528787 PLPPR3Q6T4P5 718 aa11.45□□□□□ -0.58
SSBP3-211ENST00000528787 EID1Q9Y6B2 187 aa11.45□□□□□ -0.58
SSBP3-211ENST00000528787 IDI1Q13907 227 aa11.44□□□□□ -0.58
SSBP3-211ENST00000528787 CLTCL1P53675 1640 aa11.44□□□□□ -0.58
SSBP3-211ENST00000528787 UBR1Q8IWV7 1749 aa11.43□□□□□ -0.58
SSBP3-211ENST00000528787 CHGAP10645 457 aaKnown RBP11.43□□□□□ -0.58
SSBP3-211ENST00000528787 TONSLQ96HA7 1378 aa11.42□□□□□ -0.58
SSBP3-211ENST00000528787 VGFO15240 615 aaPredicted RBP11.42□□□□□ -0.58
SSBP3-211ENST00000528787 ZNF326Q5BKZ1 582 aaKnown RBP11.42□□□□□ -0.58
SSBP3-211ENST00000528787 PLA2R1Q13018 1463 aa11.42□□□□□ -0.58
SSBP3-211ENST00000528787 TMEM131LA2VDJ0 1609 aa11.42□□□□□ -0.58
SSBP3-211ENST00000528787 ZEB1P37275 1124 aaPredicted RBP11.41□□□□□ -0.58
SSBP3-211ENST00000528787 FOXD1Q16676 465 aa11.41□□□□□ -0.58
SSBP3-211ENST00000528787 PPP1R15AO75807 674 aaPredicted RBP11.4□□□□□ -0.58
SSBP3-211ENST00000528787 ANKLE2Q86XL3 938 aa11.4□□□□□ -0.58
SSBP3-211ENST00000528787 DMRT2Q9Y5R5 561 aa11.4□□□□□ -0.58
SSBP3-211ENST00000528787 SLIT1O75093 1534 aa11.4□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms