RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.41■□□□□ 0.86
PCDHA3-201ENST00000522353 PMFBP1Q8TBY8 1022 aa20.41■□□□□ 0.86
PCDHA3-201ENST00000522353 SLC4A10Q6U841 1118 aa20.4■□□□□ 0.86
PCDHA3-201ENST00000522353 C1orf141Q5JVX7 400 aa20.4■□□□□ 0.86
PCDHA3-201ENST00000522353 CGNL1Q0VF96 1302 aa20.39■□□□□ 0.85
PCDHA3-201ENST00000522353 FRAT2O75474 233 aaPredicted RBP20.38■□□□□ 0.85
PCDHA3-201ENST00000522353 PDE3BQ13370 1112 aa20.38■□□□□ 0.85
PCDHA3-201ENST00000522353 HTATSF1O43719 755 aaKnown RBP20.37■□□□□ 0.85
PCDHA3-201ENST00000522353 ST20-MTHFSA0A0A6YYL1 179 aa20.36■□□□□ 0.85
PCDHA3-201ENST00000522353 TEFQ10587 303 aa20.35■□□□□ 0.85
PCDHA3-201ENST00000522353 CENPJQ9HC77 1338 aaPredicted RBP20.35■□□□□ 0.85
PCDHA3-201ENST00000522353 MINK1Q8N4C8 1332 aaPredicted RBP20.33■□□□□ 0.85
PCDHA3-201ENST00000522353 CCDC146Q8IYE0 955 aa20.33■□□□□ 0.85
PCDHA3-201ENST00000522353 KIF15Q9NS87 1388 aa20.33■□□□□ 0.85
PCDHA3-201ENST00000522353 TRIM6-TRIM34B2RNG4 842 aa20.32■□□□□ 0.84
PCDHA3-201ENST00000522353 CCDC34Q96HJ3 373 aa20.32■□□□□ 0.84
PCDHA3-201ENST00000522353 PSME1Q06323 249 aa20.32■□□□□ 0.84
PCDHA3-201ENST00000522353 L1TD1Q5T7N2 865 aaKnown RBP20.31■□□□□ 0.84
PCDHA3-201ENST00000522353 STAC3Q96MF2 364 aa20.31■□□□□ 0.84
PCDHA3-201ENST00000522353 FGD5Q6ZNL6 1462 aa20.31■□□□□ 0.84
PCDHA3-201ENST00000522353 PANK3Q9H999 370 aa20.31■□□□□ 0.84
PCDHA3-201ENST00000522353 TTC5Q8N0Z6 440 aa20.31■□□□□ 0.84
PCDHA3-201ENST00000522353 NAP1L5Q96NT1 182 aaPredicted RBP20.31■□□□□ 0.84
PCDHA3-201ENST00000522353 MYOM3Q5VTT5 1437 aa20.3■□□□□ 0.84
PCDHA3-201ENST00000522353 CLUAP1Q96AJ1 413 aa20.29■□□□□ 0.84
PCDHA3-201ENST00000522353 PTMSP20962 102 aa20.28■□□□□ 0.84
PCDHA3-201ENST00000522353 MEX3CQ5U5Q3 659 aaKnown RBP20.28■□□□□ 0.84
PCDHA3-201ENST00000522353 TCERG1O14776 1098 aaKnown RBP20.28■□□□□ 0.84
PCDHA3-201ENST00000522353 CHAF1AQ13111 956 aaPredicted RBP20.28■□□□□ 0.84
PCDHA3-201ENST00000522353 MYBBP1AQ9BQG0 1328 aaKnown RBP20.27■□□□□ 0.84
PCDHA3-201ENST00000522353 ATF3P18847 181 aa20.27■□□□□ 0.84
PCDHA3-201ENST00000522353 IGF1RP08069 1367 aa20.27■□□□□ 0.84
PCDHA3-201ENST00000522353 MSH5O43196 834 aa20.26■□□□□ 0.83
PCDHA3-201ENST00000522353 NEXNQ0ZGT2 675 aa20.26■□□□□ 0.83
PCDHA3-201ENST00000522353 GBP4Q96PP9 640 aa20.26■□□□□ 0.83
PCDHA3-201ENST00000522353 SPRYD3Q8NCJ5 442 aa20.24■□□□□ 0.83
PCDHA3-201ENST00000522353 TOMM22Q9NS69 142 aa20.24■□□□□ 0.83
PCDHA3-201ENST00000522353 HSP90B1P14625 803 aaKnown RBP20.24■□□□□ 0.83
PCDHA3-201ENST00000522353 DRC7Q8IY82 874 aa20.24■□□□□ 0.83
PCDHA3-201ENST00000522353 RAD54L2Q9Y4B4 1467 aa20.22■□□□□ 0.83
PCDHA3-201ENST00000522353 NCAPD3P42695 1498 aa20.22■□□□□ 0.83
PCDHA3-201ENST00000522353 MSNP26038 577 aaKnown RBP20.21■□□□□ 0.83
PCDHA3-201ENST00000522353 KIF3AQ9Y496 699 aa20.21■□□□□ 0.83
PCDHA3-201ENST00000522353 RRP7AQ9Y3A4 280 aaKnown RBP20.21■□□□□ 0.83
PCDHA3-201ENST00000522353 DHX57Q6P158 1386 aaKnown RBP20.21■□□□□ 0.83
PCDHA3-201ENST00000522353 KIAA2012Q0VF49 1180 aa20.2■□□□□ 0.82
PCDHA3-201ENST00000522353 DIAPH1O60610 1272 aaKnown RBP20.19■□□□□ 0.82
PCDHA3-201ENST00000522353 LRRFIP1Q32MZ4 808 aaKnown RBP20.19■□□□□ 0.82
PCDHA3-201ENST00000522353 AQRO60306 1485 aaKnown RBP eCLIP20.19■□□□□ 0.82
PCDHA3-201ENST00000522353 USP47Q96K76 1375 aa20.18■□□□□ 0.82
PCDHA3-201ENST00000522353 ELL2O00472 640 aaPredicted RBP20.18■□□□□ 0.82
PCDHA3-201ENST00000522353 RBM19Q9Y4C8 960 aaKnown RBP20.18■□□□□ 0.82
PCDHA3-201ENST00000522353 SYAP1Q96A49 352 aaPredicted RBP20.18■□□□□ 0.82
PCDHA3-201ENST00000522353 RASSF8Q8NHQ8 419 aa20.17■□□□□ 0.82
PCDHA3-201ENST00000522353 SYTL4Q96C24 671 aaPredicted RBP20.17■□□□□ 0.82
PCDHA3-201ENST00000522353 NCBP3Q53F19 620 aaKnown RBP20.17■□□□□ 0.82
PCDHA3-201ENST00000522353 E9PSI1 815 aa20.17■□□□□ 0.82
PCDHA3-201ENST00000522353 MFAP1P55081 439 aaKnown RBP20.17■□□□□ 0.82
PCDHA3-201ENST00000522353 NGEFQ8N5V2 710 aa20.17■□□□□ 0.82
PCDHA3-201ENST00000522353 RAPGEF4Q8WZA2 1011 aa20.17■□□□□ 0.82
PCDHA3-201ENST00000522353 CHMP4CQ96CF2 233 aa20.17■□□□□ 0.82
PCDHA3-201ENST00000522353 DDX58O95786 925 aaKnown RBP20.16■□□□□ 0.82
PCDHA3-201ENST00000522353 GRIN2BQ13224 1484 aa20.15■□□□□ 0.82
PCDHA3-201ENST00000522353 RUSC2Q8N2Y8 1516 aa20.15■□□□□ 0.82
PCDHA3-201ENST00000522353 CSPP1Q1MSJ5 1256 aa20.14■□□□□ 0.81
PCDHA3-201ENST00000522353 TPM4P67936 248 aa20.14■□□□□ 0.81
PCDHA3-201ENST00000522353 NOL10Q9BSC4 688 aaKnown RBP20.14■□□□□ 0.81
PCDHA3-201ENST00000522353 ZKSCAN2Q63HK3 967 aa20.14■□□□□ 0.81
PCDHA3-201ENST00000522353 C9orf78Q9NZ63 289 aaPredicted RBP20.14■□□□□ 0.81
PCDHA3-201ENST00000522353 EIF2S2P20042 333 aaKnown RBP20.13■□□□□ 0.81
PCDHA3-201ENST00000522353 MARCH6O60337 910 aa20.12■□□□□ 0.81
PCDHA3-201ENST00000522353 AMOTL1Q8IY63 956 aa20.11■□□□□ 0.81
PCDHA3-201ENST00000522353 KIF16BQ96L93 1317 aa20.11■□□□□ 0.81
PCDHA3-201ENST00000522353 MIA2Q96PC5 1412 aa20.11■□□□□ 0.81
PCDHA3-201ENST00000522353 ST18O60284 1047 aa20.11■□□□□ 0.81
PCDHA3-201ENST00000522353 RTN4Q9NQC3 1192 aaKnown RBP20.1■□□□□ 0.81
PCDHA3-201ENST00000522353 TSHZ2Q9NRE2 1034 aa20.09■□□□□ 0.81
PCDHA3-201ENST00000522353 CUX1P39880 1505 aa20.09■□□□□ 0.81
PCDHA3-201ENST00000522353 SLKQ9H2G2 1235 aaPredicted RBP20.08■□□□□ 0.81
PCDHA3-201ENST00000522353 API5Q9BZZ5 524 aaKnown RBP20.08■□□□□ 0.8
PCDHA3-201ENST00000522353 ANKRD50Q9ULJ7 1429 aa20.08■□□□□ 0.8
PCDHA3-201ENST00000522353 SYNJ2O15056 1496 aa20.07■□□□□ 0.8
PCDHA3-201ENST00000522353 VPS53Q5VIR6 699 aa20.07■□□□□ 0.8
PCDHA3-201ENST00000522353 NLRP2Q9NX02 1062 aa20.07■□□□□ 0.8
PCDHA3-201ENST00000522353 ZNF644Q9H582 1327 aaPredicted RBP20.07■□□□□ 0.8
PCDHA3-201ENST00000522353 TRIM34Q9BYJ4 488 aa20.07■□□□□ 0.8
PCDHA3-201ENST00000522353 FGD6Q6ZV73 1430 aa20.07■□□□□ 0.8
PCDHA3-201ENST00000522353 GPRASP1Q5JY77 1395 aa20.06■□□□□ 0.8
PCDHA3-201ENST00000522353 AFAP1Q8N556 730 aa20.06■□□□□ 0.8
PCDHA3-201ENST00000522353 PRKRIP1Q9H875 184 aaPredicted RBP20.06■□□□□ 0.8
PCDHA3-201ENST00000522353 AKAP17AQ02040 695 aaKnown RBP20.06■□□□□ 0.8
PCDHA3-201ENST00000522353 TXNDC2Q86VQ3 553 aa20.06■□□□□ 0.8
PCDHA3-201ENST00000522353 RIPK4P57078 832 aa20.05■□□□□ 0.8
PCDHA3-201ENST00000522353 BCL2L13Q9BXK5 485 aa20.05■□□□□ 0.8
PCDHA3-201ENST00000522353 APAF1O14727 1248 aa20.05■□□□□ 0.8
PCDHA3-201ENST00000522353 SYNE3Q6ZMZ3 975 aa20.05■□□□□ 0.8
PCDHA3-201ENST00000522353 VPS37DQ86XT2 251 aa20.05■□□□□ 0.8
PCDHA3-201ENST00000522353 RILPL2Q969X0 211 aa20.05■□□□□ 0.8
PCDHA3-201ENST00000522353 PRG4Q92954 1404 aaPredicted RBP20.05■□□□□ 0.8
PCDHA3-201ENST00000522353 NLRP6P59044 892 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms